data_5EPK # _entry.id 5EPK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5EPK WWPDB D_1000215314 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5EPL PDB . unspecified 5EPJ PDB . unspecified 5EQ0 BMCD . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EPK _pdbx_database_status.recvd_initial_deposition_date 2015-11-11 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Tempel, W.' 2 'Walker, J.R.' 3 'Stuckey, J.I.' 4 'Dickson, B.M.' 5 'James, L.I.' 6 'Frye, S.V.' 7 'Bountra, C.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Min, J.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 180 _citation.page_last 187 _citation.title 'A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nchembio.2007 _citation.pdbx_database_id_PubMed 26807715 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stuckey, J.I.' 1 ? primary 'Dickson, B.M.' 2 ? primary 'Cheng, N.' 3 ? primary 'Liu, Y.' 4 ? primary 'Norris, J.L.' 5 ? primary 'Cholensky, S.H.' 6 ? primary 'Tempel, W.' 7 ? primary 'Qin, S.' 8 ? primary 'Huber, K.G.' 9 ? primary 'Sagum, C.' 10 ? primary 'Black, K.' 11 ? primary 'Li, F.' 12 ? primary 'Huang, X.P.' 13 ? primary 'Roth, B.L.' 14 ? primary 'Baughman, B.M.' 15 ? primary 'Senisterra, G.' 16 ? primary 'Pattenden, S.G.' 17 ? primary 'Vedadi, M.' 18 ? primary 'Brown, P.J.' 19 ? primary 'Bedford, M.T.' 20 ? primary 'Min, J.' 21 ? primary 'Arrowsmith, C.H.' 22 ? primary 'James, L.I.' 23 ? primary 'Frye, S.V.' 24 ? # _cell.entry_id 5EPK _cell.length_a 78.894 _cell.length_b 78.894 _cell.length_c 30.609 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EPK _symmetry.space_group_name_H-M 'P 6' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromobox protein homolog 2' 6568.604 1 ? ? ? ? 2 polymer syn unc3866 795.020 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 8 ? ? ? ? 4 water nat water 18.015 40 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE GEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE A ? 2 'polypeptide(L)' no yes '(5R0)FAL(ELY)(5R5)' XFALXX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 GLN n 1 4 VAL n 1 5 PHE n 1 6 ALA n 1 7 ALA n 1 8 GLU n 1 9 CYS n 1 10 ILE n 1 11 LEU n 1 12 SER n 1 13 LYS n 1 14 ARG n 1 15 LEU n 1 16 ARG n 1 17 LYS n 1 18 GLY n 1 19 LYS n 1 20 LEU n 1 21 GLU n 1 22 TYR n 1 23 LEU n 1 24 VAL n 1 25 LYS n 1 26 TRP n 1 27 ARG n 1 28 GLY n 1 29 TRP n 1 30 SER n 1 31 SER n 1 32 LYS n 1 33 HIS n 1 34 ASN n 1 35 SER n 1 36 TRP n 1 37 GLU n 1 38 PRO n 1 39 GLU n 1 40 GLU n 1 41 ASN n 1 42 ILE n 1 43 LEU n 1 44 ASP n 1 45 PRO n 1 46 ARG n 1 47 LEU n 1 48 LEU n 1 49 LEU n 1 50 ALA n 1 51 PHE n 1 52 GLN n 1 53 LYS n 1 54 LYS n 1 55 GLU n 2 1 5R0 n 2 2 PHE n 2 3 ALA n 2 4 LEU n 2 5 ELY n 2 6 5R5 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 55 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CBX2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CBX2_HUMAN Q14781 ? 1 GEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 8 2 PDB 5EPK 5EPK ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EPK A 1 ? 55 ? Q14781 8 ? 62 ? 8 62 2 2 5EPK B 1 ? 6 ? 5EPK 0 ? 5 ? 0 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5R0 non-polymer . '4-~{tert}-butylbenzoic acid' ? 'C11 H14 O2' 178.228 5R5 'L-peptide linking' n 'methyl L-serinate' 'methyl (2~{S})-2-azanyl-3-oxidanyl-propanoate' 'C4 H9 N O3' 119.119 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 ELY 'L-peptide linking' n N~6~,N~6~-diethyl-L-lysine '(2S)-2-azanyl-6-(diethylamino)hexanoic acid' 'C10 H22 N2 O2' 202.294 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EPK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.9 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2 M potassium thiocyanate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN A200' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5EPK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.160 _reflns.d_resolution_high 1.800 _reflns.number_obs 10262 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.06700 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.60 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.88600 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.100 _reflns_shell.pdbx_redundancy 10.30 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5EPK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9752 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.212 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 506 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 31.13 _refine.aniso_B[1][1] 0.10000 _refine.aniso_B[2][2] 0.10000 _refine.aniso_B[3][3] -0.31000 _refine.aniso_B[1][2] 0.05000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;PHENIX.ELBOW/MOGUL WAS USED TO GENERATE GEOMETRY RESTRAINTS FOR INHIBITOR BUILDING BLOCKS. JLIGAND WAS USED FOR PREPARATION OF LINK RESTRAINTS. LINK RESTRAINTS WERE MANUALLY MODIFIED, FOR EXAMPLE TO ESTABLISH PLANAR GEOMETRY OF METHYL ESTER TERMINUS OF INHIBITOR. COOT WAS USED FOR INTERACTIVE MODEL BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. ELECTRON DENSITY DOES NOT FULLY RESOLVE THE LIGAND'S N-EPSILON ETHYLATION AND C-TERMINAL SERINE METHYL ESTER MOIETY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.094 _refine.overall_SU_ML 0.066 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.690 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 501 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 549 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 34.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.019 ? 535 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 528 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.892 1.969 ? 727 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.009 3.000 ? 1203 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.895 5.000 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 23.032 22.500 ? 24 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.397 15.000 ? 90 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.253 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 75 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 596 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 134 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.743 1.723 ? 246 'X-RAY DIFFRACTION' ? r_mcbond_other 1.685 1.632 ? 239 'X-RAY DIFFRACTION' ? r_mcangle_it 2.467 2.557 ? 306 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 705 _refine_ls_shell.R_factor_R_work 0.2230 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.2610 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5EPK _struct.title 'Crystal Structure of chromodomain of CBX2 in complex with inhibitor UNC3866' _struct.pdbx_descriptor 'Chromobox protein homolog 2, unc3866' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EPK _struct_keywords.text 'structural genomics, Structural Genomics Consortium, SGC, transcription-transcription inhibitor complex' _struct_keywords.pdbx_keywords 'transcription/transcription inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS HAVE NOT INDICATED THE BIOLOGICAL UNIT' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 30 ? ASN A 34 ? SER A 37 ASN A 41 5 ? 5 HELX_P HELX_P2 AA2 GLU A 40 ? ILE A 42 ? GLU A 47 ILE A 49 5 ? 3 HELX_P HELX_P3 AA3 PRO A 45 ? LYS A 54 ? PRO A 52 LYS A 61 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? B 5R0 1 C1 ? ? ? 1_555 B PHE 2 N ? ? B 5R0 0 B PHE 1 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale both ? B LEU 4 C ? ? ? 1_555 B ELY 5 N ? ? B LEU 3 B ELY 4 1_555 ? ? ? ? ? ? ? 1.303 ? covale3 covale one ? B ELY 5 C ? ? ? 1_555 B 5R5 6 N ? ? B ELY 4 B 5R5 5 1_555 ? ? ? ? ? ? ? 1.344 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? PHE A 5 ? GLN A 10 PHE A 12 AA1 2 ALA B 3 ? ELY B 5 ? ALA B 2 ELY B 4 AA2 1 ALA A 7 ? ARG A 16 ? ALA A 14 ARG A 23 AA2 2 LYS A 19 ? TRP A 26 ? LYS A 26 TRP A 33 AA2 3 SER A 35 ? PRO A 38 ? SER A 42 PRO A 45 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 5 ? N PHE A 12 O ALA B 3 ? O ALA B 2 AA2 1 2 N LEU A 11 ? N LEU A 18 O LEU A 23 ? O LEU A 30 AA2 2 3 N VAL A 24 ? N VAL A 31 O SER A 35 ? O SER A 42 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id 5R0 _struct_site.pdbx_auth_seq_id 0 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'binding site for UNC3866 chain B' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLU A 2 ? GLU A 9 . ? 1_555 ? 2 AC1 18 GLN A 3 ? GLN A 10 . ? 1_555 ? 3 AC1 18 VAL A 4 ? VAL A 11 . ? 1_555 ? 4 AC1 18 PHE A 5 ? PHE A 12 . ? 1_555 ? 5 AC1 18 ALA A 6 ? ALA A 13 . ? 1_555 ? 6 AC1 18 ALA A 7 ? ALA A 14 . ? 1_555 ? 7 AC1 18 TRP A 26 ? TRP A 33 . ? 1_555 ? 8 AC1 18 TRP A 29 ? TRP A 36 . ? 1_555 ? 9 AC1 18 GLU A 37 ? GLU A 44 . ? 1_555 ? 10 AC1 18 ASN A 41 ? ASN A 48 . ? 1_555 ? 11 AC1 18 LEU A 43 ? LEU A 50 . ? 1_555 ? 12 AC1 18 LEU A 43 ? LEU A 50 . ? 2_565 ? 13 AC1 18 ASP A 44 ? ASP A 51 . ? 1_555 ? 14 AC1 18 ARG A 46 ? ARG A 53 . ? 1_555 ? 15 AC1 18 LEU A 47 ? LEU A 54 . ? 1_555 ? 16 AC1 18 HOH K . ? HOH A 204 . ? 1_555 ? 17 AC1 18 HOH L . ? HOH B 101 . ? 1_555 ? 18 AC1 18 HOH L . ? HOH B 102 . ? 1_555 ? # _atom_sites.entry_id 5EPK _atom_sites.fract_transf_matrix[1][1] 0.012675 _atom_sites.fract_transf_matrix[1][2] 0.007318 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014636 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032670 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 8 ? ? ? A . n A 1 2 GLU 2 9 9 GLU GLU A . n A 1 3 GLN 3 10 10 GLN GLN A . n A 1 4 VAL 4 11 11 VAL VAL A . n A 1 5 PHE 5 12 12 PHE PHE A . n A 1 6 ALA 6 13 13 ALA ALA A . n A 1 7 ALA 7 14 14 ALA ALA A . n A 1 8 GLU 8 15 15 GLU GLU A . n A 1 9 CYS 9 16 16 CYS CYS A . n A 1 10 ILE 10 17 17 ILE ILE A . n A 1 11 LEU 11 18 18 LEU LEU A . n A 1 12 SER 12 19 19 SER SER A . n A 1 13 LYS 13 20 20 LYS LYS A . n A 1 14 ARG 14 21 21 ARG ARG A . n A 1 15 LEU 15 22 22 LEU LEU A . n A 1 16 ARG 16 23 23 ARG ARG A . n A 1 17 LYS 17 24 24 LYS LYS A . n A 1 18 GLY 18 25 25 GLY GLY A . n A 1 19 LYS 19 26 26 LYS LYS A . n A 1 20 LEU 20 27 27 LEU LEU A . n A 1 21 GLU 21 28 28 GLU GLU A . n A 1 22 TYR 22 29 29 TYR TYR A . n A 1 23 LEU 23 30 30 LEU LEU A . n A 1 24 VAL 24 31 31 VAL VAL A . n A 1 25 LYS 25 32 32 LYS LYS A . n A 1 26 TRP 26 33 33 TRP TRP A . n A 1 27 ARG 27 34 34 ARG ARG A . n A 1 28 GLY 28 35 35 GLY GLY A . n A 1 29 TRP 29 36 36 TRP TRP A . n A 1 30 SER 30 37 37 SER SER A . n A 1 31 SER 31 38 38 SER SER A . n A 1 32 LYS 32 39 39 LYS LYS A . n A 1 33 HIS 33 40 40 HIS HIS A . n A 1 34 ASN 34 41 41 ASN ASN A . n A 1 35 SER 35 42 42 SER SER A . n A 1 36 TRP 36 43 43 TRP TRP A . n A 1 37 GLU 37 44 44 GLU GLU A . n A 1 38 PRO 38 45 45 PRO PRO A . n A 1 39 GLU 39 46 46 GLU GLU A . n A 1 40 GLU 40 47 47 GLU GLU A . n A 1 41 ASN 41 48 48 ASN ASN A . n A 1 42 ILE 42 49 49 ILE ILE A . n A 1 43 LEU 43 50 50 LEU LEU A . n A 1 44 ASP 44 51 51 ASP ASP A . n A 1 45 PRO 45 52 52 PRO PRO A . n A 1 46 ARG 46 53 53 ARG ARG A . n A 1 47 LEU 47 54 54 LEU LEU A . n A 1 48 LEU 48 55 55 LEU LEU A . n A 1 49 LEU 49 56 56 LEU LEU A . n A 1 50 ALA 50 57 57 ALA ALA A . n A 1 51 PHE 51 58 58 PHE PHE A . n A 1 52 GLN 52 59 59 GLN GLN A . n A 1 53 LYS 53 60 60 LYS LYS A . n A 1 54 LYS 54 61 61 LYS LYS A . n A 1 55 GLU 55 62 62 GLU GLU A . n B 2 1 5R0 1 0 0 5R0 5R0 B . n B 2 2 PHE 2 1 1 PHE PHE B . n B 2 3 ALA 3 2 2 ALA ALA B . n B 2 4 LEU 4 3 3 LEU LEU B . n B 2 5 ELY 5 4 4 ELY ELY B . n B 2 6 5R5 6 5 5 5R5 5R5 B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UNX 1 101 101 UNX UNX A . D 3 UNX 1 102 102 UNX UNX A . E 3 UNX 1 103 103 UNX UNX A . F 3 UNX 1 104 104 UNX UNX A . G 3 UNX 1 105 105 UNX UNX A . H 3 UNX 1 106 106 UNX UNX A . I 3 UNX 1 107 107 UNX UNX A . J 3 UNX 1 108 108 UNX UNX A . K 4 HOH 1 201 201 HOH HOH A . K 4 HOH 2 202 202 HOH HOH A . K 4 HOH 3 203 203 HOH HOH A . K 4 HOH 4 204 204 HOH HOH A . K 4 HOH 5 205 205 HOH HOH A . K 4 HOH 6 206 206 HOH HOH A . K 4 HOH 7 207 207 HOH HOH A . K 4 HOH 8 208 208 HOH HOH A . K 4 HOH 9 209 209 HOH HOH A . K 4 HOH 10 210 210 HOH HOH A . K 4 HOH 11 211 211 HOH HOH A . K 4 HOH 12 212 212 HOH HOH A . K 4 HOH 13 213 213 HOH HOH A . K 4 HOH 14 214 214 HOH HOH A . K 4 HOH 15 215 215 HOH HOH A . K 4 HOH 16 216 216 HOH HOH A . K 4 HOH 17 217 217 HOH HOH A . K 4 HOH 18 218 218 HOH HOH A . K 4 HOH 19 219 219 HOH HOH A . K 4 HOH 20 220 220 HOH HOH A . K 4 HOH 21 221 221 HOH HOH A . K 4 HOH 22 222 222 HOH HOH A . K 4 HOH 23 223 223 HOH HOH A . K 4 HOH 24 224 224 HOH HOH A . K 4 HOH 25 225 225 HOH HOH A . K 4 HOH 26 226 226 HOH HOH A . K 4 HOH 27 227 227 HOH HOH A . K 4 HOH 28 228 228 HOH HOH A . K 4 HOH 29 229 229 HOH HOH A . K 4 HOH 30 230 230 HOH HOH A . K 4 HOH 31 231 231 HOH HOH A . K 4 HOH 32 232 232 HOH HOH A . K 4 HOH 33 233 233 HOH HOH A . K 4 HOH 34 234 234 HOH HOH A . K 4 HOH 35 235 235 HOH HOH A . K 4 HOH 36 236 236 HOH HOH A . K 4 HOH 37 237 237 HOH HOH A . K 4 HOH 38 238 238 HOH HOH A . L 4 HOH 1 101 101 HOH HOH B . L 4 HOH 2 102 102 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_002208 _pdbx_molecule_features.name UNC3866 _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002208 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1370 ? 1 MORE -6 ? 1 'SSA (A^2)' 4250 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 202 ? K HOH . 2 1 A HOH 224 ? K HOH . 3 1 A HOH 225 ? K HOH . 4 1 A HOH 233 ? K HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-23 2 'Structure model' 1 1 2016-01-13 3 'Structure model' 1 2 2016-02-17 4 'Structure model' 1 3 2016-02-24 5 'Structure model' 2 0 2019-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.auth_atom_id' 2 5 'Structure model' '_atom_site.label_atom_id' 3 5 'Structure model' '_chem_comp.mon_nstd_flag' 4 5 'Structure model' '_chem_comp.name' 5 5 'Structure model' '_chem_comp.pdbx_synonyms' 6 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -25.0186 _pdbx_refine_tls.origin_y 26.6098 _pdbx_refine_tls.origin_z -12.1938 _pdbx_refine_tls.T[1][1] 0.0157 _pdbx_refine_tls.T[2][2] 0.0635 _pdbx_refine_tls.T[3][3] 0.0563 _pdbx_refine_tls.T[1][2] -0.0110 _pdbx_refine_tls.T[1][3] -0.0082 _pdbx_refine_tls.T[2][3] 0.0288 _pdbx_refine_tls.L[1][1] 6.8523 _pdbx_refine_tls.L[2][2] 5.1492 _pdbx_refine_tls.L[3][3] 4.6661 _pdbx_refine_tls.L[1][2] 2.3198 _pdbx_refine_tls.L[1][3] 1.7025 _pdbx_refine_tls.L[2][3] 1.3620 _pdbx_refine_tls.S[1][1] 0.1503 _pdbx_refine_tls.S[1][2] -0.0974 _pdbx_refine_tls.S[1][3] -0.5091 _pdbx_refine_tls.S[2][1] 0.0273 _pdbx_refine_tls.S[2][2] -0.1258 _pdbx_refine_tls.S[2][3] -0.4032 _pdbx_refine_tls.S[3][1] 0.1712 _pdbx_refine_tls.S[3][2] 0.2224 _pdbx_refine_tls.S[3][3] -0.0245 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 9 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 62 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0123 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.1 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 9 ? CG ? A GLU 2 CG 2 1 Y 1 A GLU 9 ? CD ? A GLU 2 CD 3 1 Y 1 A GLU 9 ? OE1 ? A GLU 2 OE1 4 1 Y 1 A GLU 9 ? OE2 ? A GLU 2 OE2 5 1 Y 1 A LYS 24 ? CE ? A LYS 17 CE 6 1 Y 1 A LYS 24 ? NZ ? A LYS 17 NZ 7 1 Y 1 A LYS 26 ? CG ? A LYS 19 CG 8 1 Y 1 A LYS 26 ? CD ? A LYS 19 CD 9 1 Y 1 A LYS 26 ? CE ? A LYS 19 CE 10 1 Y 1 A LYS 26 ? NZ ? A LYS 19 NZ 11 1 Y 1 A LYS 60 ? CE ? A LYS 53 CE 12 1 Y 1 A LYS 60 ? NZ ? A LYS 53 NZ 13 1 Y 1 A LYS 61 ? CG ? A LYS 54 CG 14 1 Y 1 A LYS 61 ? CD ? A LYS 54 CD 15 1 Y 1 A LYS 61 ? CE ? A LYS 54 CE 16 1 Y 1 A LYS 61 ? NZ ? A LYS 54 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 8 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #