HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 11-NOV-15 5EPL TITLE CRYSTAL STRUCTURE OF CHROMODOMAIN OF CBX4 IN COMPLEX WITH INHIBITOR TITLE 2 UNC3866 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 SUMO-PROTEIN LIGASE CBX4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHROMOBOX PROTEIN HOMOLOG 4,POLYCOMB 2 HOMOLOG,HPC2; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UNC3866; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBX4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: SYNTHETIC KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,W.TEMPEL,J.R.WALKER,J.I.STUCKEY,B.M.DICKSON,L.I.JAMES,S.V.FRYE, AUTHOR 2 C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 27-NOV-19 5EPL 1 REMARK HETNAM HETSYN ATOM REVDAT 4 24-FEB-16 5EPL 1 JRNL REVDAT 3 17-FEB-16 5EPL 1 JRNL REVDAT 2 13-JAN-16 5EPL 1 AUTHOR REVDAT 1 23-DEC-15 5EPL 0 JRNL AUTH J.I.STUCKEY,B.M.DICKSON,N.CHENG,Y.LIU,J.L.NORRIS, JRNL AUTH 2 S.H.CHOLENSKY,W.TEMPEL,S.QIN,K.G.HUBER,C.SAGUM,K.BLACK,F.LI, JRNL AUTH 3 X.P.HUANG,B.L.ROTH,B.M.BAUGHMAN,G.SENISTERRA,S.G.PATTENDEN, JRNL AUTH 4 M.VEDADI,P.J.BROWN,M.T.BEDFORD,J.MIN,C.H.ARROWSMITH, JRNL AUTH 5 L.I.JAMES,S.V.FRYE JRNL TITL A CELLULAR CHEMICAL PROBE TARGETING THE CHROMODOMAINS OF JRNL TITL 2 POLYCOMB REPRESSIVE COMPLEX 1. JRNL REF NAT.CHEM.BIOL. V. 12 180 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 26807715 JRNL DOI 10.1038/NCHEMBIO.2007 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1142 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.790 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1102 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1071 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1499 ; 1.753 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2449 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 119 ; 6.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;26.329 ;22.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;11.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1209 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 268 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 500 ; 1.692 ; 1.777 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 493 ; 1.671 ; 1.757 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 2.428 ; 2.645 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6140 44.3827 5.4479 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0091 REMARK 3 T33: 0.0259 T12: -0.0039 REMARK 3 T13: 0.0022 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.2446 L22: 1.1528 REMARK 3 L33: 3.5625 L12: 0.3394 REMARK 3 L13: -0.2863 L23: 0.8125 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: 0.0351 S13: -0.0757 REMARK 3 S21: -0.1153 S22: 0.0238 S23: -0.1379 REMARK 3 S31: -0.0956 S32: 0.1602 S33: -0.0422 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): -38.7264 33.6792 8.9303 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0546 REMARK 3 T33: 0.0251 T12: -0.0081 REMARK 3 T13: 0.0090 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.9104 L22: 5.0650 REMARK 3 L33: 2.4453 L12: 2.4020 REMARK 3 L13: -0.6834 L23: -0.4104 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.2141 S13: -0.2270 REMARK 3 S21: 0.2322 S22: -0.1629 S23: -0.0305 REMARK 3 S31: 0.1298 S32: -0.1698 S33: 0.1451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS SOLVED BY MOLECULAR REMARK 3 REPLACEMENT WITH AN ISOMORPHOUS CRYSTAL, FOLLOWED BY PHASE REMARK 3 IMPROVEMENT AND AUTOMATED MODEL BUILDING WITH ARP/WARP. REMARK 3 PHENIX.ELBOW/MOGUL WAS USED TO GENERATE GEOMETRY RESTRAINTS FOR REMARK 3 INHIBITOR BUILDING BLOCKS. LIGAND WAS USED FOR PREPARATION OF REMARK 3 LINK RESTRAINTS. LINK RESTRAINTS WERE MANUALLY MODIFIED, FOR REMARK 3 EXAMPLE TO ESTABLISH PLANAR GEOMETRY OF METHYL ESTER TERMINUS OF REMARK 3 INHIBITOR. COOT WAS USED FOR INTERACTIVE MODEL BUILDING. MODEL REMARK 3 GEOMETRY WAS EVALUATED WITH MOLPROBITY.ELECTRON DENSITY DID NOT REMARK 3 FULLY RESOLVE THE LIGAND'S C-TERMINAL SERINE ESTER MOIETY REMARK 4 REMARK 4 5EPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786036 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 44.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.40 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 19.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3350, 0.2M SODIUM CHLORIDE, 0.1 REMARK 280 M SODIUM CACODYLATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.35233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.70467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.52850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.88083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.17617 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.35233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.70467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 110.88083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.52850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.17617 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE NOT INDICATED THE BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE UNC3866 IS OLIGOPEPTIDE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: UNC3866 REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 60 REMARK 465 GLU A 61 REMARK 465 ARG A 62 REMARK 465 GLN A 63 REMARK 465 GLU A 64 REMARK 465 GLN A 65 REMARK 465 GLU B 64 REMARK 465 GLN B 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 ASN A 59 C O CB CG OD1 ND2 REMARK 470 LYS B 18 CE NZ REMARK 470 LYS B 23 CD CE NZ REMARK 470 LYS B 38 NZ REMARK 470 GLN B 58 CD OE1 NE2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 62 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 63 C O CB CG CD OE1 NE2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 207 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for UNC3866 chain C REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for UNC3866 chain D REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EQ0 RELATED DB: PDB REMARK 900 RELATED ID: 5EPJ RELATED DB: PDB REMARK 900 RELATED ID: 5EPK RELATED DB: PDB DBREF 5EPL A 8 65 UNP O00257 CBX4_HUMAN 8 65 DBREF 5EPL B 8 65 UNP O00257 CBX4_HUMAN 8 65 DBREF 5EPL C 0 5 PDB 5EPL 5EPL 0 5 DBREF 5EPL D 0 5 PDB 5EPL 5EPL 0 5 SEQADV 5EPL GLY A 6 UNP O00257 EXPRESSION TAG SEQADV 5EPL SER A 7 UNP O00257 EXPRESSION TAG SEQADV 5EPL GLY B 6 UNP O00257 EXPRESSION TAG SEQADV 5EPL SER B 7 UNP O00257 EXPRESSION TAG SEQRES 1 A 60 GLY SER GLU HIS VAL PHE ALA VAL GLU SER ILE GLU LYS SEQRES 2 A 60 LYS ARG ILE ARG LYS GLY ARG VAL GLU TYR LEU VAL LYS SEQRES 3 A 60 TRP ARG GLY TRP SER PRO LYS TYR ASN THR TRP GLU PRO SEQRES 4 A 60 GLU GLU ASN ILE LEU ASP PRO ARG LEU LEU ILE ALA PHE SEQRES 5 A 60 GLN ASN ARG GLU ARG GLN GLU GLN SEQRES 1 B 60 GLY SER GLU HIS VAL PHE ALA VAL GLU SER ILE GLU LYS SEQRES 2 B 60 LYS ARG ILE ARG LYS GLY ARG VAL GLU TYR LEU VAL LYS SEQRES 3 B 60 TRP ARG GLY TRP SER PRO LYS TYR ASN THR TRP GLU PRO SEQRES 4 B 60 GLU GLU ASN ILE LEU ASP PRO ARG LEU LEU ILE ALA PHE SEQRES 5 B 60 GLN ASN ARG GLU ARG GLN GLU GLN SEQRES 1 C 6 5R0 PHE ALA LEU ELY 5R5 SEQRES 1 D 6 5R0 PHE ALA LEU ELY 5R5 HET 5R0 C 0 12 HET ELY C 4 13 HET 5R5 C 5 16 HET 5R0 D 0 12 HET ELY D 4 13 HET 5R5 D 5 12 HET UNX A 101 1 HET UNX A 102 1 HET UNX A 103 1 HET UNX B 101 1 HET UNX B 102 1 HET UNX B 103 1 HET UNX B 104 1 HET UNX B 105 1 HETNAM 5R0 4-~{TERT}-BUTYLBENZOIC ACID HETNAM ELY N~6~,N~6~-DIETHYL-L-LYSINE HETNAM 5R5 METHYL L-SERINATE HETNAM UNX UNKNOWN ATOM OR ION HETSYN ELY (2S)-2-AZANYL-6-(DIETHYLAMINO)HEXANOIC ACID HETSYN 5R5 METHYL (2~{S})-2-AZANYL-3-OXIDANYL-PROPANOATE FORMUL 3 5R0 2(C11 H14 O2) FORMUL 3 ELY 2(C10 H22 N2 O2) FORMUL 3 5R5 2(C4 H9 N O3) FORMUL 5 UNX 8(X) FORMUL 13 HOH *117(H2 O) HELIX 1 AA1 SER A 36 ASN A 40 5 5 HELIX 2 AA2 GLU A 46 ILE A 48 5 3 HELIX 3 AA3 ASP A 50 GLN A 58 5 9 HELIX 4 AA4 GLY B 6 GLU B 8 5 3 HELIX 5 AA5 SER B 36 ASN B 40 5 5 HELIX 6 AA6 GLU B 46 ILE B 48 5 3 HELIX 7 AA7 PRO B 51 GLU B 61 1 11 SHEET 1 AA1 2 VAL A 10 PHE A 11 0 SHEET 2 AA1 2 ALA C 2 LEU C 3 -1 O ALA C 2 N PHE A 11 SHEET 1 AA2 3 VAL A 13 ARG A 22 0 SHEET 2 AA2 3 ARG A 25 TRP A 32 -1 O LEU A 29 N GLU A 17 SHEET 3 AA2 3 THR A 41 PRO A 44 -1 O THR A 41 N VAL A 30 SHEET 1 AA3 2 VAL B 10 PHE B 11 0 SHEET 2 AA3 2 ALA D 2 LEU D 3 -1 O ALA D 2 N PHE B 11 SHEET 1 AA4 3 VAL B 13 ARG B 22 0 SHEET 2 AA4 3 ARG B 25 TRP B 32 -1 O LEU B 29 N GLU B 17 SHEET 3 AA4 3 THR B 41 PRO B 44 -1 O GLU B 43 N TYR B 28 LINK C1 5R0 C 0 N PHE C 1 1555 1555 1.36 LINK C LEU C 3 N ELY C 4 1555 1555 1.33 LINK C ELY C 4 N A5R5 C 5 1555 1555 1.36 LINK C ELY C 4 N B5R5 C 5 1555 1555 1.36 LINK C1 5R0 D 0 N PHE D 1 1555 1555 1.34 LINK C LEU D 3 N ELY D 4 1555 1555 1.32 LINK C ELY D 4 N 5R5 D 5 1555 1555 1.33 SITE 1 AC1 19 HIS A 9 VAL A 10 PHE A 11 ALA A 12 SITE 2 AC1 19 VAL A 13 TRP A 32 TRP A 35 GLU A 43 SITE 3 AC1 19 ASN A 47 LEU A 49 ASP A 50 ARG A 52 SITE 4 AC1 19 LEU A 53 HOH A 212 HOH A 216 ALA B 12 SITE 5 AC1 19 HOH C 201 HOH C 202 HOH C 203 SITE 1 AC2 22 GLU A 8 HIS A 9 LEU A 49 PRO A 51 SITE 2 AC2 22 HIS B 9 VAL B 10 PHE B 11 ALA B 12 SITE 3 AC2 22 VAL B 13 TRP B 32 TRP B 35 TYR B 39 SITE 4 AC2 22 GLU B 43 ASN B 47 LEU B 49 ASP B 50 SITE 5 AC2 22 ARG B 52 LEU B 53 HOH B 212 HOH B 231 SITE 6 AC2 22 HOH D 201 HOH D 202 CRYST1 65.178 65.178 133.057 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015343 0.008858 0.000000 0.00000 SCALE2 0.000000 0.017716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007516 0.00000