data_5EQ0 # _entry.id 5EQ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5EQ0 WWPDB D_1000215291 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5ebj _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EQ0 _pdbx_database_status.recvd_initial_deposition_date 2015-11-12 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Tempel, W.' 2 'Walker, J.R.' 3 'Stuckey, J.I.' 4 'Dickson, B.M.' 5 'James, L.I.' 6 'Frye, S.V.' 7 'Bountra, C.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Min, J.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 180 _citation.page_last 187 _citation.title 'A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nchembio.2007 _citation.pdbx_database_id_PubMed 26807715 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stuckey, J.I.' 1 ? primary 'Dickson, B.M.' 2 ? primary 'Cheng, N.' 3 ? primary 'Liu, Y.' 4 ? primary 'Norris, J.L.' 5 ? primary 'Cholensky, S.H.' 6 ? primary 'Tempel, W.' 7 ? primary 'Qin, S.' 8 ? primary 'Huber, K.G.' 9 ? primary 'Sagum, C.' 10 ? primary 'Black, K.' 11 ? primary 'Li, F.' 12 ? primary 'Huang, X.P.' 13 ? primary 'Roth, B.L.' 14 ? primary 'Baughman, B.M.' 15 ? primary 'Senisterra, G.' 16 ? primary 'Pattenden, S.G.' 17 ? primary 'Vedadi, M.' 18 ? primary 'Brown, P.J.' 19 ? primary 'Bedford, M.T.' 20 ? primary 'Min, J.' 21 ? primary 'Arrowsmith, C.H.' 22 ? primary 'James, L.I.' 23 ? primary 'Frye, S.V.' 24 ? # _cell.entry_id 5EQ0 _cell.length_a 30.575 _cell.length_b 30.007 _cell.length_c 36.104 _cell.angle_alpha 90.00 _cell.angle_beta 100.17 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EQ0 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromobox protein homolog 8' 6667.653 1 ? ? ? ? 2 polymer syn unc3866 795.020 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 12 ? ? ? ? 4 water nat water 18.015 49 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polycomb 3 homolog,hPc3,Rectachrome 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE GERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE A ? 2 'polypeptide(L)' no yes '(5R0)FAL(ELY)(5R5)' XFALXX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ARG n 1 4 VAL n 1 5 PHE n 1 6 ALA n 1 7 ALA n 1 8 GLU n 1 9 ALA n 1 10 LEU n 1 11 LEU n 1 12 LYS n 1 13 ARG n 1 14 ARG n 1 15 ILE n 1 16 ARG n 1 17 LYS n 1 18 GLY n 1 19 ARG n 1 20 MET n 1 21 GLU n 1 22 TYR n 1 23 LEU n 1 24 VAL n 1 25 LYS n 1 26 TRP n 1 27 LYS n 1 28 GLY n 1 29 TRP n 1 30 SER n 1 31 GLN n 1 32 LYS n 1 33 TYR n 1 34 SER n 1 35 THR n 1 36 TRP n 1 37 GLU n 1 38 PRO n 1 39 GLU n 1 40 GLU n 1 41 ASN n 1 42 ILE n 1 43 LEU n 1 44 ASP n 1 45 ALA n 1 46 ARG n 1 47 LEU n 1 48 LEU n 1 49 ALA n 1 50 ALA n 1 51 PHE n 1 52 GLU n 1 53 GLU n 1 54 ARG n 1 55 GLU n 2 1 5R0 n 2 2 PHE n 2 3 ALA n 2 4 LEU n 2 5 ELY n 2 6 5R5 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 55 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CBX8, PC3, RC1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details synthetic # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CBX8_HUMAN Q9HC52 ? 1 GERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE 7 2 PDB 5EQ0 5EQ0 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EQ0 A 1 ? 55 ? Q9HC52 7 ? 61 ? 7 61 2 2 5EQ0 B 1 ? 6 ? 5EQ0 0 ? 5 ? 0 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5R0 non-polymer . '4-~{tert}-butylbenzoic acid' ? 'C11 H14 O2' 178.228 5R5 'L-peptide linking' n 'methyl L-serinate' 'methyl (2~{S})-2-azanyl-3-oxidanyl-propanoate' 'C4 H9 N O3' 119.119 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ELY 'L-peptide linking' n N~6~,N~6~-diethyl-L-lysine '(2S)-2-azanyl-6-(diethylamino)hexanoic acid' 'C10 H22 N2 O2' 202.294 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EQ0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.4 M sodium citrate, 0.1 M HEPES, 5% glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786036 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9786036 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5EQ0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.540 _reflns.d_resolution_high 1.180 _reflns.number_obs 21328 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.03800 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.500 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.18 _reflns_shell.d_res_low 1.20 _reflns_shell.percent_possible_all 94.5 _reflns_shell.Rmerge_I_obs 0.34300 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.700 _reflns_shell.pdbx_redundancy 3.30 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5EQ0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20239 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.54 _refine.ls_d_res_high 1.18 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.158 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.156 _refine.ls_R_factor_R_free 0.186 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1069 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.B_iso_mean 11.56 _refine.aniso_B[1][1] -0.02000 _refine.aniso_B[2][2] -0.26000 _refine.aniso_B[3][3] 0.20000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.18000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE STRUCTURE WAS SOLVED BY MOLECULAR REPLACEMENT WITH COORDINATES DERIVED FROM A SIMILAR COMPLEX OF CBX7 AND DATA FROM AN ISOMORPHOUS CRYSTAL. PHASE IMPROVEMENT AND AUTOMATED MODEL BUILDING WERE PERFORMED BY ARP/WARP. PHENIX.ELBOW/MOGUL WAS USED TO GENERATE GEOMETRY RESTRAINTS FOR INHIBITOR BUILDING BLOCKS. JLIGAND WAS USED FOR PREPARATION OF LINK RESTRAINTS. LINK RESTRAINTS WERE MANUALLY MODIFIED, FOR EXAMPLE TO RESTRAIN PLANAR GEOMETRY OF METHYL ESTER TERMINUS OF INHIBITOR. ELECTRON DENSITY PEAKS NEAR CBX8 RESIDUES K23 AND R52, RESPECTIVELY, SUGGEST PRESENCE OF PHOSPHATE OR SULFATE IONS, BUT WE COULD NOT EXPLAIN THE ORIGIN OF SUCH IONS. COOT WAS USED FOR INTERACTIVE MODEL BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. ADP WERE ANALYZED ON THE PARVATI SERVER. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.039 _refine.pdbx_overall_ESU_R_Free 0.040 _refine.overall_SU_ML 0.025 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.190 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 525 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 586 _refine_hist.d_res_high 1.18 _refine_hist.d_res_low 35.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.019 ? 586 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 592 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.960 1.964 ? 791 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.098 3.000 ? 1357 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.317 5.000 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 24.544 21.333 ? 30 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 9.976 15.000 ? 114 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.716 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.125 0.200 ? 76 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 647 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 151 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.257 0.887 ? 257 'X-RAY DIFFRACTION' ? r_mcbond_other 1.255 0.883 ? 254 'X-RAY DIFFRACTION' ? r_mcangle_it 1.777 1.335 ? 321 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.877 3.000 ? 1178 'X-RAY DIFFRACTION' ? r_sphericity_free 21.278 5.000 ? 20 'X-RAY DIFFRACTION' ? r_sphericity_bonded 8.892 5.000 ? 1202 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.18 _refine_ls_shell.d_res_low 1.21 _refine_ls_shell.number_reflns_R_work 1481 _refine_ls_shell.R_factor_R_work 0.1760 _refine_ls_shell.percent_reflns_obs 97.89 _refine_ls_shell.R_factor_R_free 0.2420 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5EQ0 _struct.title 'Crystal Structure of chromodomain of CBX8 in complex with inhibitor UNC3866' _struct.pdbx_descriptor 'Chromobox protein homolog 8, unc3866' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EQ0 _struct_keywords.text 'structural genomics, Structural Genomics Consortium, SGC, transcription-transcription inhibitor complex' _struct_keywords.pdbx_keywords 'transcription/transcription inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? # _struct_biol.id 1 _struct_biol.details 'authors have not specified the biological unit' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 30 ? SER A 34 ? SER A 36 SER A 40 5 ? 5 HELX_P HELX_P2 AA2 GLU A 40 ? ILE A 42 ? GLU A 46 ILE A 48 5 ? 3 HELX_P HELX_P3 AA3 ASP A 44 ? ARG A 54 ? ASP A 50 ARG A 60 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? B 5R0 1 C1 ? ? ? 1_555 B PHE 2 N ? ? B 5R0 0 B PHE 1 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale both ? B LEU 4 C ? ? ? 1_555 B ELY 5 N ? ? B LEU 3 B ELY 4 1_555 ? ? ? ? ? ? ? 1.356 ? covale3 covale one ? B ELY 5 C ? ? ? 1_555 B 5R5 6 N ? ? B ELY 4 B 5R5 5 1_555 ? ? ? ? ? ? ? 1.340 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 3 ? PHE A 5 ? ARG A 9 PHE A 11 AA1 2 ALA B 3 ? ELY B 5 ? ALA B 2 ELY B 4 AA2 1 ALA A 7 ? LEU A 10 ? ALA A 13 LEU A 16 AA2 2 ARG A 19 ? TRP A 26 ? ARG A 25 TRP A 32 AA2 3 ARG A 14 ? ARG A 16 ? ARG A 20 ARG A 22 AA3 1 ALA A 7 ? LEU A 10 ? ALA A 13 LEU A 16 AA3 2 ARG A 19 ? TRP A 26 ? ARG A 25 TRP A 32 AA3 3 THR A 35 ? PRO A 38 ? THR A 41 PRO A 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 3 ? N ARG A 9 O ELY B 5 ? O ELY B 4 AA2 1 2 N GLU A 8 ? N GLU A 14 O LYS A 25 ? O LYS A 31 AA2 2 3 O GLU A 21 ? O GLU A 27 N ARG A 14 ? N ARG A 20 AA3 1 2 N GLU A 8 ? N GLU A 14 O LYS A 25 ? O LYS A 31 AA3 2 3 N TYR A 22 ? N TYR A 28 O GLU A 37 ? O GLU A 43 # _atom_sites.entry_id 5EQ0 _atom_sites.fract_transf_matrix[1][1] 0.032706 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005867 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033326 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028140 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 7 7 GLY GLY A . n A 1 2 GLU 2 8 8 GLU GLU A . n A 1 3 ARG 3 9 9 ARG ARG A . n A 1 4 VAL 4 10 10 VAL VAL A . n A 1 5 PHE 5 11 11 PHE PHE A . n A 1 6 ALA 6 12 12 ALA ALA A . n A 1 7 ALA 7 13 13 ALA ALA A . n A 1 8 GLU 8 14 14 GLU GLU A . n A 1 9 ALA 9 15 15 ALA ALA A . n A 1 10 LEU 10 16 16 LEU LEU A . n A 1 11 LEU 11 17 17 LEU LEU A . n A 1 12 LYS 12 18 18 LYS LYS A . n A 1 13 ARG 13 19 19 ARG ARG A . n A 1 14 ARG 14 20 20 ARG ARG A . n A 1 15 ILE 15 21 21 ILE ILE A . n A 1 16 ARG 16 22 22 ARG ARG A . n A 1 17 LYS 17 23 23 LYS LYS A . n A 1 18 GLY 18 24 24 GLY GLY A . n A 1 19 ARG 19 25 25 ARG ARG A . n A 1 20 MET 20 26 26 MET MET A . n A 1 21 GLU 21 27 27 GLU GLU A . n A 1 22 TYR 22 28 28 TYR TYR A . n A 1 23 LEU 23 29 29 LEU LEU A . n A 1 24 VAL 24 30 30 VAL VAL A . n A 1 25 LYS 25 31 31 LYS LYS A . n A 1 26 TRP 26 32 32 TRP TRP A . n A 1 27 LYS 27 33 33 LYS LYS A . n A 1 28 GLY 28 34 34 GLY GLY A . n A 1 29 TRP 29 35 35 TRP TRP A . n A 1 30 SER 30 36 36 SER SER A . n A 1 31 GLN 31 37 37 GLN GLN A . n A 1 32 LYS 32 38 38 LYS LYS A . n A 1 33 TYR 33 39 39 TYR TYR A . n A 1 34 SER 34 40 40 SER SER A . n A 1 35 THR 35 41 41 THR THR A . n A 1 36 TRP 36 42 42 TRP TRP A . n A 1 37 GLU 37 43 43 GLU GLU A . n A 1 38 PRO 38 44 44 PRO PRO A . n A 1 39 GLU 39 45 45 GLU GLU A . n A 1 40 GLU 40 46 46 GLU GLU A . n A 1 41 ASN 41 47 47 ASN ASN A . n A 1 42 ILE 42 48 48 ILE ILE A . n A 1 43 LEU 43 49 49 LEU LEU A . n A 1 44 ASP 44 50 50 ASP ASP A . n A 1 45 ALA 45 51 51 ALA ALA A . n A 1 46 ARG 46 52 52 ARG ARG A . n A 1 47 LEU 47 53 53 LEU LEU A . n A 1 48 LEU 48 54 54 LEU LEU A . n A 1 49 ALA 49 55 55 ALA ALA A . n A 1 50 ALA 50 56 56 ALA ALA A . n A 1 51 PHE 51 57 57 PHE PHE A . n A 1 52 GLU 52 58 58 GLU GLU A . n A 1 53 GLU 53 59 59 GLU GLU A . n A 1 54 ARG 54 60 60 ARG ARG A . n A 1 55 GLU 55 61 61 GLU GLU A . n B 2 1 5R0 1 0 0 5R0 5R0 B . n B 2 2 PHE 2 1 1 PHE PHE B . n B 2 3 ALA 3 2 2 ALA ALA B . n B 2 4 LEU 4 3 3 LEU LEU B . n B 2 5 ELY 5 4 4 ELY ELY B . n B 2 6 5R5 6 5 5 5R5 5R5 B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UNX 1 101 103 UNX UNX A . D 3 UNX 1 102 104 UNX UNX A . E 3 UNX 1 103 105 UNX UNX A . F 3 UNX 1 104 106 UNX UNX A . G 3 UNX 1 105 107 UNX UNX A . H 3 UNX 1 106 108 UNX UNX A . I 3 UNX 1 107 109 UNX UNX A . J 3 UNX 1 108 111 UNX UNX A . K 3 UNX 1 109 112 UNX UNX A . L 3 UNX 1 110 113 UNX UNX A . M 3 UNX 1 111 114 UNX UNX A . N 3 UNX 1 101 110 UNX UNX B . O 4 HOH 1 201 201 HOH HOH A . O 4 HOH 2 202 202 HOH HOH A . O 4 HOH 3 203 203 HOH HOH A . O 4 HOH 4 204 204 HOH HOH A . O 4 HOH 5 205 205 HOH HOH A . O 4 HOH 6 206 206 HOH HOH A . O 4 HOH 7 207 207 HOH HOH A . O 4 HOH 8 208 208 HOH HOH A . O 4 HOH 9 209 209 HOH HOH A . O 4 HOH 10 210 210 HOH HOH A . O 4 HOH 11 211 211 HOH HOH A . O 4 HOH 12 212 212 HOH HOH A . O 4 HOH 13 213 213 HOH HOH A . O 4 HOH 14 214 214 HOH HOH A . O 4 HOH 15 215 215 HOH HOH A . O 4 HOH 16 216 216 HOH HOH A . O 4 HOH 17 217 217 HOH HOH A . O 4 HOH 18 218 218 HOH HOH A . O 4 HOH 19 219 219 HOH HOH A . O 4 HOH 20 220 220 HOH HOH A . O 4 HOH 21 221 221 HOH HOH A . O 4 HOH 22 222 222 HOH HOH A . O 4 HOH 23 223 223 HOH HOH A . O 4 HOH 24 224 224 HOH HOH A . O 4 HOH 25 225 225 HOH HOH A . O 4 HOH 26 226 226 HOH HOH A . O 4 HOH 27 227 227 HOH HOH A . O 4 HOH 28 228 228 HOH HOH A . O 4 HOH 29 229 229 HOH HOH A . O 4 HOH 30 230 230 HOH HOH A . O 4 HOH 31 231 231 HOH HOH A . O 4 HOH 32 232 232 HOH HOH A . O 4 HOH 33 233 233 HOH HOH A . O 4 HOH 34 234 234 HOH HOH A . O 4 HOH 35 235 235 HOH HOH A . O 4 HOH 36 236 236 HOH HOH A . O 4 HOH 37 237 237 HOH HOH A . O 4 HOH 38 238 238 HOH HOH A . O 4 HOH 39 239 239 HOH HOH A . O 4 HOH 40 240 240 HOH HOH A . O 4 HOH 41 241 241 HOH HOH A . O 4 HOH 42 242 242 HOH HOH A . O 4 HOH 43 243 243 HOH HOH A . O 4 HOH 44 244 244 HOH HOH A . O 4 HOH 45 245 245 HOH HOH A . O 4 HOH 46 246 246 HOH HOH A . O 4 HOH 47 247 247 HOH HOH A . O 4 HOH 48 248 248 HOH HOH A . P 4 HOH 1 201 201 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_002208 _pdbx_molecule_features.name UNC3866 _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002208 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1300 ? 1 MORE -7 ? 1 'SSA (A^2)' 4730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-23 2 'Structure model' 1 1 2016-02-17 3 'Structure model' 1 2 2016-02-24 4 'Structure model' 2 0 2019-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp 4 4 'Structure model' diffrn_radiation_wavelength 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 4 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 5 4 'Structure model' '_chem_comp.mon_nstd_flag' 6 4 'Structure model' '_chem_comp.name' 7 4 'Structure model' '_chem_comp.pdbx_synonyms' 8 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.1 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 248 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.99 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 46 ? CD ? A GLU 40 CD 2 1 Y 1 A GLU 46 ? OE1 ? A GLU 40 OE1 3 1 Y 1 A GLU 46 ? OE2 ? A GLU 40 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #