HEADER ISOMERASE 12-NOV-15 5EQF TITLE CRYSTAL STRUCTURE OF OXIDIZED UDP-GALACTOPYRANOSE MUTASE FROM TITLE 2 CORYNEBACTERIUM DIPHTHERIAE WITH UDP BOUND IN CLOSED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 18-404; COMPND 5 EC: 5.4.99.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 257309; SOURCE 4 STRAIN: ATCC 700971 / NCTC 13129 / BIOTYPE GRAVIS; SOURCE 5 GENE: GLF, DIP2203; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL C5X KEYWDS GALACTOFURANOSE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.WANGKANONT,L.L.KIESSLING,K.T.FOREST REVDAT 6 27-SEP-23 5EQF 1 REMARK REVDAT 5 09-SEP-20 5EQF 1 TITLE REVDAT 4 11-DEC-19 5EQF 1 REMARK REVDAT 3 20-SEP-17 5EQF 1 REMARK REVDAT 2 09-AUG-17 5EQF 1 JRNL REVDAT 1 23-NOV-16 5EQF 0 JRNL AUTH K.WANGKANONT,V.J.WINTON,K.T.FOREST,L.L.KIESSLING JRNL TITL CONFORMATIONAL CONTROL OF UDP-GALACTOPYRANOSE MUTASE JRNL TITL 2 INHIBITION. JRNL REF BIOCHEMISTRY V. 56 3983 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28608671 JRNL DOI 10.1021/ACS.BIOCHEM.7B00189 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 47698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2526 - 4.6156 0.99 4971 258 0.1470 0.1747 REMARK 3 2 4.6156 - 3.6661 0.99 4891 258 0.1461 0.2102 REMARK 3 3 3.6661 - 3.2034 0.98 4827 255 0.1873 0.2562 REMARK 3 4 3.2034 - 2.9108 0.97 4791 252 0.2123 0.2708 REMARK 3 5 2.9108 - 2.7024 0.96 4732 253 0.2023 0.2328 REMARK 3 6 2.7024 - 2.5432 0.95 4618 244 0.2103 0.2754 REMARK 3 7 2.5432 - 2.4159 0.92 4501 239 0.2153 0.2718 REMARK 3 8 2.4159 - 2.3107 0.89 4330 226 0.2097 0.2684 REMARK 3 9 2.3107 - 2.2218 0.84 4109 208 0.2269 0.2661 REMARK 3 10 2.2218 - 2.1452 0.72 3546 189 0.2485 0.3009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6714 REMARK 3 ANGLE : 1.192 9137 REMARK 3 CHIRALITY : 0.051 917 REMARK 3 PLANARITY : 0.006 1184 REMARK 3 DIHEDRAL : 15.064 2434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESID 2:62) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3137 41.0458 17.2173 REMARK 3 T TENSOR REMARK 3 T11: 0.9243 T22: 0.5108 REMARK 3 T33: 0.6166 T12: 0.1716 REMARK 3 T13: -0.2789 T23: -0.1206 REMARK 3 L TENSOR REMARK 3 L11: 0.1278 L22: 0.0752 REMARK 3 L33: 0.0977 L12: 0.0831 REMARK 3 L13: -0.1045 L23: -0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.3756 S12: -0.0712 S13: 0.0225 REMARK 3 S21: 0.0234 S22: 0.0024 S23: 0.0769 REMARK 3 S31: -0.2605 S32: -0.5163 S33: -0.0531 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 63:235) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2250 25.6438 19.6515 REMARK 3 T TENSOR REMARK 3 T11: 0.4878 T22: 0.4168 REMARK 3 T33: 0.4103 T12: 0.0475 REMARK 3 T13: -0.0368 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.4136 L22: 0.8712 REMARK 3 L33: 0.8545 L12: 0.2038 REMARK 3 L13: 0.5938 L23: -0.1521 REMARK 3 S TENSOR REMARK 3 S11: -0.2001 S12: 0.1605 S13: 0.1164 REMARK 3 S21: -0.1626 S22: -0.1773 S23: -0.0385 REMARK 3 S31: -0.3458 S32: 0.0947 S33: -0.0319 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 236:316) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2208 24.5305 10.2111 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.2745 REMARK 3 T33: 0.2136 T12: 0.0450 REMARK 3 T13: -0.0216 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.7073 L22: 0.4354 REMARK 3 L33: 0.7256 L12: 0.0185 REMARK 3 L13: 0.5004 L23: -0.4807 REMARK 3 S TENSOR REMARK 3 S11: -0.2686 S12: 0.0409 S13: -0.0188 REMARK 3 S21: -0.1577 S22: 0.0772 S23: 0.0296 REMARK 3 S31: -0.2228 S32: -0.0862 S33: -0.1034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 317:386) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2691 43.5518 13.6757 REMARK 3 T TENSOR REMARK 3 T11: 0.7712 T22: 0.5701 REMARK 3 T33: 0.6204 T12: -0.1525 REMARK 3 T13: -0.2676 T23: 0.0822 REMARK 3 L TENSOR REMARK 3 L11: 0.1398 L22: 0.2379 REMARK 3 L33: 0.1766 L12: -0.0407 REMARK 3 L13: -0.0516 L23: -0.1657 REMARK 3 S TENSOR REMARK 3 S11: -0.5349 S12: 0.0981 S13: 0.2394 REMARK 3 S21: 0.1178 S22: -0.1131 S23: -0.2428 REMARK 3 S31: -0.6032 S32: 0.6356 S33: -0.0620 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 2:387) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3498 1.5180 46.9232 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.2958 REMARK 3 T33: 0.3235 T12: 0.0837 REMARK 3 T13: 0.0097 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.7249 L22: 0.5577 REMARK 3 L33: 1.1924 L12: 0.1367 REMARK 3 L13: 0.1724 L23: -0.1969 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.1332 S13: -0.0490 REMARK 3 S21: 0.0108 S22: 0.0131 S23: -0.0392 REMARK 3 S31: -0.0500 S32: -0.1784 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3654 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.145 REMARK 200 RESOLUTION RANGE LOW (A) : 30.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5EQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, 200 MM LITHIUM REMARK 280 SULFATE, 21% PEG 3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.78250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.34550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.78250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.34550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE B 14 O HOH B 501 1.88 REMARK 500 N ASN A 232 O HOH A 501 2.03 REMARK 500 O LEU A 228 O HOH A 501 2.06 REMARK 500 N VAL B 18 O HOH B 501 2.07 REMARK 500 O HOH A 647 O HOH A 653 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 223 NH2 ARG B 245 2655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 99 -161.36 -73.98 REMARK 500 ASN A 267 49.44 -86.52 REMARK 500 ASP B 3 -1.56 72.41 REMARK 500 PRO B 99 -160.94 -73.56 REMARK 500 ASN B 232 71.21 -154.30 REMARK 500 PRO B 233 2.53 -69.14 REMARK 500 ASN B 267 49.22 -85.96 REMARK 500 ALA B 385 48.15 -73.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EQD RELATED DB: PDB REMARK 900 RELATED ID: 5ER9 RELATED DB: PDB DBREF 5EQF A 1 387 UNP Q6NER4 Q6NER4_CORDI 18 404 DBREF 5EQF B 1 387 UNP Q6NER4 Q6NER4_CORDI 18 404 SEQADV 5EQF GLY A -2 UNP Q6NER4 EXPRESSION TAG SEQADV 5EQF SER A -1 UNP Q6NER4 EXPRESSION TAG SEQADV 5EQF GLY A 0 UNP Q6NER4 EXPRESSION TAG SEQADV 5EQF GLY B -2 UNP Q6NER4 EXPRESSION TAG SEQADV 5EQF SER B -1 UNP Q6NER4 EXPRESSION TAG SEQADV 5EQF GLY B 0 UNP Q6NER4 EXPRESSION TAG SEQRES 1 A 390 GLY SER GLY MET SER ASP PHE ASP LEU ILE VAL VAL GLY SEQRES 2 A 390 SER GLY LEU PHE GLY LEU THR VAL ALA GLU ARG ALA ALA SEQRES 3 A 390 SER GLN LEU GLY LYS LYS VAL LEU ILE VAL GLU LYS ARG SEQRES 4 A 390 SER HIS LEU GLY GLY ASN ALA TYR SER GLU ALA GLU PRO SEQRES 5 A 390 GLU THR GLY ILE GLU ILE HIS LYS TYR GLY ALA HIS LEU SEQRES 6 A 390 PHE HIS THR SER ASN LYS ARG VAL TRP ASP TYR VAL ASN SEQRES 7 A 390 GLN PHE THR ALA PHE THR GLY TYR GLN HIS ARG VAL PHE SEQRES 8 A 390 ALA MET HIS ASN GLY THR ALA TYR GLN PHE PRO MET GLY SEQRES 9 A 390 LEU GLY LEU ILE ASN GLN PHE PHE GLY ARG TYR TYR THR SEQRES 10 A 390 PRO ASP GLU ALA ARG GLU LEU ILE LYS GLU GLN SER ALA SEQRES 11 A 390 GLU ILE ASP SER LYS ASP ALA THR ASN LEU GLU GLU LYS SEQRES 12 A 390 ALA ILE SER LEU ILE GLY ARG PRO LEU TYR GLU ALA PHE SEQRES 13 A 390 ILE ARG ASP TYR THR ALA LYS GLN TRP GLN THR ASP PRO SEQRES 14 A 390 LYS GLU LEU PRO ALA GLY ASN ILE THR ARG LEU PRO VAL SEQRES 15 A 390 ARG TYR ASN PHE ASP ASN ARG TYR PHE ASN ASP THR TYR SEQRES 16 A 390 GLU GLY LEU PRO VAL ASP GLY TYR ALA GLN TRP LEU SER SEQRES 17 A 390 ASN MET ALA ASP HIS GLU ASN ILE GLU VAL ARG LEU ASP SEQRES 18 A 390 THR ASP TRP PHE GLU VAL ARG GLU ASP LEU ARG ALA GLN SEQRES 19 A 390 ASN PRO GLU ALA PRO VAL VAL TYR THR GLY PRO LEU ASP SEQRES 20 A 390 ARG TYR PHE ASP TYR SER GLU GLY HIS LEU GLY TRP ARG SEQRES 21 A 390 THR LEU ASP PHE GLU THR GLU VAL LEU ASN THR GLY ASP SEQRES 22 A 390 PHE GLN GLY THR PRO VAL MET ASN TYR ASN ASP ALA GLU SEQRES 23 A 390 PHE PRO TYR THR ARG ILE HIS GLU PHE ARG HIS PHE HIS SEQRES 24 A 390 PRO GLU ARG GLU ASP ARG HIS PRO LYS ASP LYS THR VAL SEQRES 25 A 390 ILE MET LYS GLU TYR SER ARG PHE ALA GLU GLU GLY ASP SEQRES 26 A 390 GLU PRO TYR TYR PRO ILE ASN THR PRO SER ASP ARG GLU SEQRES 27 A 390 MET LEU PHE LYS TYR ARG GLU LEU ALA ASP ALA GLU THR SEQRES 28 A 390 GLU SER GLY LYS VAL TYR PHE GLY GLY ARG LEU GLY THR SEQRES 29 A 390 TYR GLN TYR LEU ASP MET HIS MET ALA ILE ALA SER ALA SEQRES 30 A 390 LEU SER MET PHE ASP ASN LYS LEU VAL ASP ALA LEU LYS SEQRES 1 B 390 GLY SER GLY MET SER ASP PHE ASP LEU ILE VAL VAL GLY SEQRES 2 B 390 SER GLY LEU PHE GLY LEU THR VAL ALA GLU ARG ALA ALA SEQRES 3 B 390 SER GLN LEU GLY LYS LYS VAL LEU ILE VAL GLU LYS ARG SEQRES 4 B 390 SER HIS LEU GLY GLY ASN ALA TYR SER GLU ALA GLU PRO SEQRES 5 B 390 GLU THR GLY ILE GLU ILE HIS LYS TYR GLY ALA HIS LEU SEQRES 6 B 390 PHE HIS THR SER ASN LYS ARG VAL TRP ASP TYR VAL ASN SEQRES 7 B 390 GLN PHE THR ALA PHE THR GLY TYR GLN HIS ARG VAL PHE SEQRES 8 B 390 ALA MET HIS ASN GLY THR ALA TYR GLN PHE PRO MET GLY SEQRES 9 B 390 LEU GLY LEU ILE ASN GLN PHE PHE GLY ARG TYR TYR THR SEQRES 10 B 390 PRO ASP GLU ALA ARG GLU LEU ILE LYS GLU GLN SER ALA SEQRES 11 B 390 GLU ILE ASP SER LYS ASP ALA THR ASN LEU GLU GLU LYS SEQRES 12 B 390 ALA ILE SER LEU ILE GLY ARG PRO LEU TYR GLU ALA PHE SEQRES 13 B 390 ILE ARG ASP TYR THR ALA LYS GLN TRP GLN THR ASP PRO SEQRES 14 B 390 LYS GLU LEU PRO ALA GLY ASN ILE THR ARG LEU PRO VAL SEQRES 15 B 390 ARG TYR ASN PHE ASP ASN ARG TYR PHE ASN ASP THR TYR SEQRES 16 B 390 GLU GLY LEU PRO VAL ASP GLY TYR ALA GLN TRP LEU SER SEQRES 17 B 390 ASN MET ALA ASP HIS GLU ASN ILE GLU VAL ARG LEU ASP SEQRES 18 B 390 THR ASP TRP PHE GLU VAL ARG GLU ASP LEU ARG ALA GLN SEQRES 19 B 390 ASN PRO GLU ALA PRO VAL VAL TYR THR GLY PRO LEU ASP SEQRES 20 B 390 ARG TYR PHE ASP TYR SER GLU GLY HIS LEU GLY TRP ARG SEQRES 21 B 390 THR LEU ASP PHE GLU THR GLU VAL LEU ASN THR GLY ASP SEQRES 22 B 390 PHE GLN GLY THR PRO VAL MET ASN TYR ASN ASP ALA GLU SEQRES 23 B 390 PHE PRO TYR THR ARG ILE HIS GLU PHE ARG HIS PHE HIS SEQRES 24 B 390 PRO GLU ARG GLU ASP ARG HIS PRO LYS ASP LYS THR VAL SEQRES 25 B 390 ILE MET LYS GLU TYR SER ARG PHE ALA GLU GLU GLY ASP SEQRES 26 B 390 GLU PRO TYR TYR PRO ILE ASN THR PRO SER ASP ARG GLU SEQRES 27 B 390 MET LEU PHE LYS TYR ARG GLU LEU ALA ASP ALA GLU THR SEQRES 28 B 390 GLU SER GLY LYS VAL TYR PHE GLY GLY ARG LEU GLY THR SEQRES 29 B 390 TYR GLN TYR LEU ASP MET HIS MET ALA ILE ALA SER ALA SEQRES 30 B 390 LEU SER MET PHE ASP ASN LYS LEU VAL ASP ALA LEU LYS HET UDP A 401 25 HET FAD A 402 53 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET UDP B 401 25 HET FAD B 402 53 HET SO4 B 403 5 HET SO4 B 404 5 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 SO4 6(O4 S 2-) FORMUL 13 HOH *228(H2 O) HELIX 1 AA1 GLY A 12 LEU A 26 1 15 HELIX 2 AA2 GLY A 40 ALA A 43 5 4 HELIX 3 AA3 ASN A 67 ASN A 75 1 9 HELIX 4 AA4 GLY A 101 GLY A 110 1 10 HELIX 5 AA5 THR A 114 SER A 126 1 13 HELIX 6 AA6 ASP A 130 ALA A 134 5 5 HELIX 7 AA7 ASN A 136 GLY A 146 1 11 HELIX 8 AA8 GLY A 146 ILE A 154 1 9 HELIX 9 AA9 ILE A 154 GLN A 163 1 10 HELIX 10 AB1 ALA A 171 ARG A 176 1 6 HELIX 11 AB2 ASP A 198 ASP A 209 1 12 HELIX 12 AB3 ASP A 220 ASN A 232 1 13 HELIX 13 AB4 PRO A 242 PHE A 247 1 6 HELIX 14 AB5 ARG A 293 HIS A 303 5 11 HELIX 15 AB6 THR A 330 LYS A 352 1 23 HELIX 16 AB7 GLY A 356 THR A 361 1 6 HELIX 17 AB8 ASP A 366 LYS A 381 1 16 HELIX 18 AB9 LYS A 381 LEU A 386 1 6 HELIX 19 AC1 GLY B 12 LEU B 26 1 15 HELIX 20 AC2 GLY B 40 TYR B 44 5 5 HELIX 21 AC3 ASN B 67 ASN B 75 1 9 HELIX 22 AC4 GLY B 101 GLY B 110 1 10 HELIX 23 AC5 THR B 114 SER B 126 1 13 HELIX 24 AC6 ASP B 130 ALA B 134 5 5 HELIX 25 AC7 ASN B 136 GLY B 146 1 11 HELIX 26 AC8 GLY B 146 ILE B 154 1 9 HELIX 27 AC9 ILE B 154 GLN B 163 1 10 HELIX 28 AD1 PRO B 170 ILE B 174 5 5 HELIX 29 AD2 ASP B 198 ASP B 209 1 12 HELIX 30 AD3 ASP B 220 ARG B 229 1 10 HELIX 31 AD4 PRO B 242 PHE B 247 1 6 HELIX 32 AD5 ARG B 293 HIS B 303 5 11 HELIX 33 AD6 THR B 330 LYS B 352 1 23 HELIX 34 AD7 GLY B 356 TYR B 362 1 7 HELIX 35 AD8 ASP B 366 LYS B 381 1 16 SHEET 1 AA1 5 ILE A 213 ARG A 216 0 SHEET 2 AA1 5 VAL A 30 VAL A 33 1 N ILE A 32 O ARG A 216 SHEET 3 AA1 5 LEU A 6 VAL A 9 1 N VAL A 8 O LEU A 31 SHEET 4 AA1 5 VAL A 237 TYR A 239 1 O VAL A 238 N VAL A 9 SHEET 5 AA1 5 VAL A 353 PHE A 355 1 O TYR A 354 N VAL A 237 SHEET 1 AA2 2 SER A 45 ALA A 47 0 SHEET 2 AA2 2 GLU A 54 HIS A 56 -1 O ILE A 55 N GLU A 46 SHEET 1 AA3 2 PHE A 63 THR A 65 0 SHEET 2 AA3 2 TYR A 192 GLY A 194 -1 O TYR A 192 N THR A 65 SHEET 1 AA4 7 THR A 94 GLN A 97 0 SHEET 2 AA4 7 VAL A 87 HIS A 91 -1 N HIS A 91 O THR A 94 SHEET 3 AA4 7 VAL A 276 TYR A 279 1 O ASN A 278 N PHE A 88 SHEET 4 AA4 7 ARG A 288 GLU A 291 -1 O ILE A 289 N MET A 277 SHEET 5 AA4 7 THR A 308 PHE A 317 -1 O MET A 311 N HIS A 290 SHEET 6 AA4 7 TRP A 256 LEU A 266 -1 N THR A 258 O ARG A 316 SHEET 7 AA4 7 TYR A 326 PRO A 327 -1 O TYR A 326 N ARG A 257 SHEET 1 AA5 5 ILE B 213 ARG B 216 0 SHEET 2 AA5 5 VAL B 30 VAL B 33 1 N ILE B 32 O ARG B 216 SHEET 3 AA5 5 LEU B 6 VAL B 9 1 N VAL B 8 O VAL B 33 SHEET 4 AA5 5 VAL B 237 TYR B 239 1 O VAL B 238 N VAL B 9 SHEET 5 AA5 5 VAL B 353 PHE B 355 1 O TYR B 354 N TYR B 239 SHEET 1 AA6 2 GLU B 46 ALA B 47 0 SHEET 2 AA6 2 GLU B 54 ILE B 55 -1 O ILE B 55 N GLU B 46 SHEET 1 AA7 2 PHE B 63 THR B 65 0 SHEET 2 AA7 2 TYR B 192 GLY B 194 -1 O TYR B 192 N THR B 65 SHEET 1 AA8 7 THR B 94 PHE B 98 0 SHEET 2 AA8 7 VAL B 87 HIS B 91 -1 N HIS B 91 O THR B 94 SHEET 3 AA8 7 VAL B 276 TYR B 279 1 O ASN B 278 N MET B 90 SHEET 4 AA8 7 ARG B 288 GLU B 291 -1 O ILE B 289 N MET B 277 SHEET 5 AA8 7 THR B 308 PHE B 317 -1 O MET B 311 N HIS B 290 SHEET 6 AA8 7 TRP B 256 LEU B 266 -1 N THR B 258 O ARG B 316 SHEET 7 AA8 7 TYR B 326 PRO B 327 -1 O TYR B 326 N ARG B 257 CISPEP 1 PHE A 98 PRO A 99 0 -6.86 CISPEP 2 PHE B 98 PRO B 99 0 -5.36 SITE 1 AC1 22 PHE A 98 LEU A 137 PHE A 153 ILE A 154 SITE 2 AC1 22 TYR A 157 THR A 158 TRP A 162 ASN A 173 SITE 3 AC1 22 ARG A 176 LEU A 177 TYR A 187 ASN A 278 SITE 4 AC1 22 ASN A 280 ARG A 288 TYR A 326 TYR A 364 SITE 5 AC1 22 HOH A 529 HOH A 548 HOH A 559 HOH A 564 SITE 6 AC1 22 HOH A 614 HOH A 623 SITE 1 AC2 35 VAL A 9 GLY A 10 GLY A 12 LEU A 13 SITE 2 AC2 35 PHE A 14 VAL A 33 GLU A 34 LYS A 35 SITE 3 AC2 35 ARG A 36 GLY A 41 ASN A 42 TYR A 58 SITE 4 AC2 35 GLY A 59 ALA A 60 HIS A 61 LEU A 62 SITE 5 AC2 35 THR A 219 ASP A 220 TRP A 221 PHE A 222 SITE 6 AC2 35 LEU A 259 TYR A 325 TYR A 326 GLY A 357 SITE 7 AC2 35 ARG A 358 LEU A 359 LEU A 365 ASP A 366 SITE 8 AC2 35 MET A 367 HOH A 502 HOH A 525 HOH A 560 SITE 9 AC2 35 HOH A 583 HOH A 590 HOH A 623 SITE 1 AC3 5 ARG A 293 HIS A 294 PRO A 297 GLU A 300 SITE 2 AC3 5 HIS A 303 SITE 1 AC4 5 ARG A 36 SER A 37 HIS A 38 TYR A 58 SITE 2 AC4 5 ARG B 69 SITE 1 AC5 3 ARG A 180 ASN A 189 HOH A 503 SITE 1 AC6 3 GLN A 76 PHE A 77 THR A 78 SITE 1 AC7 20 PHE B 98 LEU B 137 PHE B 153 ILE B 154 SITE 2 AC7 20 TYR B 157 THR B 158 TRP B 162 ASN B 173 SITE 3 AC7 20 ILE B 174 ARG B 176 LEU B 177 TYR B 187 SITE 4 AC7 20 ASN B 278 ASN B 280 ARG B 288 TYR B 326 SITE 5 AC7 20 TYR B 364 HOH B 535 HOH B 540 HOH B 542 SITE 1 AC8 26 GLY B 10 GLY B 12 LEU B 13 PHE B 14 SITE 2 AC8 26 VAL B 33 GLU B 34 LYS B 35 ARG B 36 SITE 3 AC8 26 GLY B 41 ASN B 42 ALA B 60 HIS B 61 SITE 4 AC8 26 LEU B 62 HIS B 64 THR B 219 ASP B 220 SITE 5 AC8 26 TRP B 221 LEU B 259 TYR B 325 TYR B 326 SITE 6 AC8 26 GLY B 357 ARG B 358 LEU B 365 ASP B 366 SITE 7 AC8 26 MET B 367 ALA B 370 SITE 1 AC9 2 TYR B 286 LYS B 312 SITE 1 AD1 2 ARG B 293 GLU B 300 CRYST1 115.565 82.691 108.567 90.00 112.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008653 0.000000 0.003609 0.00000 SCALE2 0.000000 0.012093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009980 0.00000