HEADER TRANSFERASE 13-NOV-15 5EQJ TITLE CRYSTAL STRUCTURE OF THE TWO-SUBUNIT TRNA M1A58 METHYLTRANSFERASE FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE NON-CATALYTIC COMPND 3 SUBUNIT TRM6; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GENERAL CONTROL NON-DEREPRESSIBLE PROTEIN 10,PROTEIN GCD10, COMPND 6 TRNA(M1A58)-METHYLTRANSFERASE SUBUNIT TRM6,TRNA(M1A58)MTASE SUBUNIT COMPND 7 TRM6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE CATALYTIC SUBUNIT COMPND 11 TRM61; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: GENERAL CONTROL NON-DEREPRESSIBLE PROTEIN 14,PROTEIN GCD14, COMPND 14 TRNA(M1A58)-METHYLTRANSFERASE SUBUNIT TRM61,TRNA(M1A58)MTASE SUBUNIT COMPND 15 TRM61; COMPND 16 EC: 2.1.1.220; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: GCD10, TIF33, TRM6, YNL062C, N2422; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: GCD14, TRM61, YJL125C, J0710; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA, COMPLEX, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHU,M.WANG,C.WANG,X.FAN,X.JIANG,M.TENG,X.LI REVDAT 2 20-MAR-24 5EQJ 1 REMARK REVDAT 1 14-SEP-16 5EQJ 0 JRNL AUTH M.WANG,Y.ZHU,C.WANG,X.FAN,X.JIANG,M.EBRAHIMI,Z.QIAO,L.NIU, JRNL AUTH 2 M.TENG,X.LI JRNL TITL CRYSTAL STRUCTURE OF THE TWO-SUBUNIT TRNA M(1)A58 JRNL TITL 2 METHYLTRANSFERASE TRM6-TRM61 FROM SACCHAROMYCES CEREVISIAE. JRNL REF SCI REP V. 6 32562 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27582183 JRNL DOI 10.1038/SREP32562 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0347 - 6.0632 0.98 2681 180 0.1723 0.1768 REMARK 3 2 6.0632 - 4.8154 1.00 2670 149 0.1629 0.2111 REMARK 3 3 4.8154 - 4.2075 0.99 2632 134 0.1408 0.1654 REMARK 3 4 4.2075 - 3.8232 1.00 2625 170 0.1559 0.1732 REMARK 3 5 3.8232 - 3.5493 1.00 2610 163 0.1761 0.2212 REMARK 3 6 3.5493 - 3.3402 1.00 2646 118 0.1847 0.2090 REMARK 3 7 3.3402 - 3.1730 1.00 2668 108 0.2150 0.2149 REMARK 3 8 3.1730 - 3.0349 1.00 2618 129 0.2014 0.2452 REMARK 3 9 3.0349 - 2.9181 1.00 2621 135 0.2108 0.2391 REMARK 3 10 2.9181 - 2.8175 1.00 2598 149 0.2050 0.2497 REMARK 3 11 2.8175 - 2.7294 1.00 2602 145 0.2114 0.2471 REMARK 3 12 2.7294 - 2.6514 1.00 2635 131 0.2136 0.2804 REMARK 3 13 2.6514 - 2.5816 1.00 2618 117 0.2113 0.2727 REMARK 3 14 2.5816 - 2.5186 1.00 2573 153 0.2136 0.2273 REMARK 3 15 2.5186 - 2.4614 1.00 2604 142 0.2144 0.3037 REMARK 3 16 2.4614 - 2.4090 1.00 2624 113 0.2206 0.2782 REMARK 3 17 2.4090 - 2.3608 1.00 2596 117 0.2167 0.2739 REMARK 3 18 2.3608 - 2.3163 1.00 2581 169 0.2187 0.2722 REMARK 3 19 2.3163 - 2.2749 1.00 2591 113 0.2246 0.2912 REMARK 3 20 2.2749 - 2.2364 1.00 2621 118 0.2254 0.2772 REMARK 3 21 2.2364 - 2.2003 1.00 2608 120 0.2266 0.2658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5423 REMARK 3 ANGLE : 1.129 7338 REMARK 3 CHIRALITY : 0.050 808 REMARK 3 PLANARITY : 0.005 937 REMARK 3 DIHEDRAL : 15.315 1987 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M KCL, 0.1 M TRIS HCL PH 8.5, 15% REMARK 280 PEG 2000 MME, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.48467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.24233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.24233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.48467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.24233 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 ASP A 67 REMARK 465 GLU A 68 REMARK 465 ASN A 69 REMARK 465 ARG A 70 REMARK 465 ASP A 71 REMARK 465 SER A 72 REMARK 465 LYS A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 75 REMARK 465 ASN A 76 REMARK 465 LYS A 77 REMARK 465 ILE A 78 REMARK 465 PRO A 79 REMARK 465 SER A 87 REMARK 465 GLN A 88 REMARK 465 GLU A 89 REMARK 465 ILE A 90 REMARK 465 LYS A 91 REMARK 465 ASP A 92 REMARK 465 VAL A 93 REMARK 465 ASN A 94 REMARK 465 ASN A 95 REMARK 465 ASP A 96 REMARK 465 LYS A 97 REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 GLN A 101 REMARK 465 SER A 102 REMARK 465 GLU A 103 REMARK 465 PRO A 104 REMARK 465 PRO A 105 REMARK 465 LEU A 106 REMARK 465 SER A 107 REMARK 465 ILE A 108 REMARK 465 LYS A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 SER A 112 REMARK 465 VAL A 113 REMARK 465 SER A 114 REMARK 465 LEU A 115 REMARK 465 GLU A 116 REMARK 465 LEU A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 ILE A 120 REMARK 465 ASP A 121 REMARK 465 SER A 122 REMARK 465 SER A 123 REMARK 465 ALA A 124 REMARK 465 THR A 125 REMARK 465 ASN A 126 REMARK 465 GLN A 127 REMARK 465 ASN A 128 REMARK 465 LEU A 129 REMARK 465 VAL A 130 REMARK 465 ASN A 131 REMARK 465 MET A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 LYS A 135 REMARK 465 ALA A 136 REMARK 465 GLN A 137 REMARK 465 GLU A 138 REMARK 465 LEU A 139 REMARK 465 THR A 140 REMARK 465 VAL A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 ILE A 144 REMARK 465 GLU A 145 REMARK 465 LYS A 146 REMARK 465 MET A 147 REMARK 465 LYS A 148 REMARK 465 GLN A 149 REMARK 465 GLU A 150 REMARK 465 SER A 151 REMARK 465 LEU A 152 REMARK 465 SER A 153 REMARK 465 SER A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 ILE A 157 REMARK 465 ILE A 158 REMARK 465 ASP A 159 REMARK 465 LYS A 160 REMARK 465 ILE A 161 REMARK 465 ILE A 162 REMARK 465 LYS A 163 REMARK 465 SER A 164 REMARK 465 HIS A 165 REMARK 465 LYS A 166 REMARK 465 SER A 167 REMARK 465 PHE A 168 REMARK 465 HIS A 169 REMARK 465 ASN A 170 REMARK 465 LYS A 171 REMARK 465 THR A 172 REMARK 465 VAL A 173 REMARK 465 TYR A 174 REMARK 465 SER A 175 REMARK 465 GLN A 176 REMARK 465 GLU A 177 REMARK 465 LYS A 178 REMARK 465 TYR A 179 REMARK 465 VAL A 180 REMARK 465 ASN A 181 REMARK 465 ARG A 182 REMARK 465 LYS A 183 REMARK 465 LYS A 184 REMARK 465 GLN A 185 REMARK 465 LYS A 186 REMARK 465 PHE A 187 REMARK 465 ALA A 188 REMARK 465 LYS A 322 REMARK 465 GLU A 323 REMARK 465 GLU A 324 REMARK 465 ALA A 325 REMARK 465 PRO A 452 REMARK 465 GLU A 453 REMARK 465 PRO A 454 REMARK 465 VAL A 455 REMARK 465 SER A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 ALA A 459 REMARK 465 THR A 460 REMARK 465 ALA A 461 REMARK 465 ALA A 462 REMARK 465 ASP A 463 REMARK 465 SER A 464 REMARK 465 SER A 465 REMARK 465 GLU A 466 REMARK 465 LYS A 467 REMARK 465 LEU A 468 REMARK 465 ALA A 469 REMARK 465 GLU A 470 REMARK 465 HIS A 471 REMARK 465 GLY A 472 REMARK 465 ALA A 473 REMARK 465 LYS A 474 REMARK 465 LYS A 475 REMARK 465 GLN A 476 REMARK 465 LYS A 477 REMARK 465 ILE A 478 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 LYS B 65 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 ASN B 68 REMARK 465 LYS B 69 REMARK 465 HIS B 89 REMARK 465 ARG B 90 REMARK 465 LYS B 285 REMARK 465 LEU B 286 REMARK 465 GLN B 287 REMARK 465 GLY B 288 REMARK 465 VAL B 289 REMARK 465 GLU B 290 REMARK 465 ARG B 291 REMARK 465 ARG B 292 REMARK 465 LYS B 293 REMARK 465 ARG B 294 REMARK 465 MET B 295 REMARK 465 PHE B 296 REMARK 465 ASN B 297 REMARK 465 ASN B 298 REMARK 465 THR B 299 REMARK 465 ILE B 300 REMARK 465 ASP B 301 REMARK 465 SER B 302 REMARK 465 ASN B 303 REMARK 465 ASP B 304 REMARK 465 GLU B 305 REMARK 465 LYS B 306 REMARK 465 VAL B 307 REMARK 465 GLY B 308 REMARK 465 LYS B 309 REMARK 465 ARG B 310 REMARK 465 ASN B 311 REMARK 465 GLU B 312 REMARK 465 ASP B 313 REMARK 465 GLY B 314 REMARK 465 VAL B 315 REMARK 465 PRO B 316 REMARK 465 LEU B 317 REMARK 465 THR B 318 REMARK 465 GLU B 319 REMARK 465 LYS B 320 REMARK 465 ALA B 321 REMARK 465 LYS B 322 REMARK 465 PHE B 323 REMARK 465 ASN B 324 REMARK 465 PRO B 325 REMARK 465 PHE B 326 REMARK 465 GLY B 327 REMARK 465 LYS B 328 REMARK 465 GLY B 329 REMARK 465 SER B 330 REMARK 465 ARG B 331 REMARK 465 ILE B 377 REMARK 465 LEU B 378 REMARK 465 ARG B 379 REMARK 465 SER B 380 REMARK 465 THR B 381 REMARK 465 GLU B 382 REMARK 465 LYS B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -2 CG CD OE1 NE2 REMARK 470 GLU A 42 OE1 OE2 REMARK 470 ILE A 80 CD1 REMARK 470 ILE A 271 CD1 REMARK 470 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 470 THR A 318 OG1 CG2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 328 CD1 CD2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 TYR A 337 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 425 CD1 REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 LYS A 436 CE NZ REMARK 470 ILE B 52 CD1 REMARK 470 ILE B 60 CD1 REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 THR B 64 OG1 CG2 REMARK 470 PHE B 70 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 ILE B 93 CD1 REMARK 470 VAL B 132 CG1 CG2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 ASN B 188 CG OD1 ND2 REMARK 470 ILE B 233 CD1 REMARK 470 VAL B 242 CG1 CG2 REMARK 470 GLU B 276 CD OE1 OE2 REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 -3.15 77.98 REMARK 500 ASP A 210 30.64 -91.38 REMARK 500 ASN A 274 -168.55 -103.33 REMARK 500 PHE A 317 133.59 -170.20 REMARK 500 ASP B 160 -89.87 -112.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ERG RELATED DB: PDB DBREF 5EQJ A 1 478 UNP P41814 TRM6_YEAST 1 478 DBREF 5EQJ B 1 383 UNP P46959 TRM61_YEAST 1 383 SEQADV 5EQJ HIS A -9 UNP P41814 EXPRESSION TAG SEQADV 5EQJ HIS A -8 UNP P41814 EXPRESSION TAG SEQADV 5EQJ HIS A -7 UNP P41814 EXPRESSION TAG SEQADV 5EQJ HIS A -6 UNP P41814 EXPRESSION TAG SEQADV 5EQJ HIS A -5 UNP P41814 EXPRESSION TAG SEQADV 5EQJ HIS A -4 UNP P41814 EXPRESSION TAG SEQADV 5EQJ SER A -3 UNP P41814 EXPRESSION TAG SEQADV 5EQJ GLN A -2 UNP P41814 EXPRESSION TAG SEQADV 5EQJ ASP A -1 UNP P41814 EXPRESSION TAG SEQADV 5EQJ PRO A 0 UNP P41814 EXPRESSION TAG SEQRES 1 A 488 HIS HIS HIS HIS HIS HIS SER GLN ASP PRO MET ASN ALA SEQRES 2 A 488 LEU THR THR ILE ASP PHE ASN GLN HIS VAL ILE VAL ARG SEQRES 3 A 488 LEU PRO SER LYS ASN TYR LYS ILE VAL GLU LEU LYS PRO SEQRES 4 A 488 ASN THR SER VAL SER LEU GLY LYS PHE GLY ALA PHE GLU SEQRES 5 A 488 VAL ASN ASP ILE ILE GLY TYR PRO PHE GLY LEU THR PHE SEQRES 6 A 488 GLU ILE TYR TYR ASP GLY GLU GLU VAL SER SER ASP GLU SEQRES 7 A 488 ASN ARG ASP SER LYS PRO LYS ASN LYS ILE PRO ILE GLY SEQRES 8 A 488 LYS VAL ARG LEU LEU SER GLN GLU ILE LYS ASP VAL ASN SEQRES 9 A 488 ASN ASP LYS ASP ASP GLY GLN SER GLU PRO PRO LEU SER SEQRES 10 A 488 ILE LYS GLU LYS SER VAL SER LEU GLU LEU SER SER ILE SEQRES 11 A 488 ASP SER SER ALA THR ASN GLN ASN LEU VAL ASN MET GLY SEQRES 12 A 488 SER LYS ALA GLN GLU LEU THR VAL GLU GLU ILE GLU LYS SEQRES 13 A 488 MET LYS GLN GLU SER LEU SER SER LYS GLU ILE ILE ASP SEQRES 14 A 488 LYS ILE ILE LYS SER HIS LYS SER PHE HIS ASN LYS THR SEQRES 15 A 488 VAL TYR SER GLN GLU LYS TYR VAL ASN ARG LYS LYS GLN SEQRES 16 A 488 LYS PHE ALA LYS TYR PHE THR VAL GLU TYR LEU SER SER SEQRES 17 A 488 SER ASN LEU LEU GLN PHE LEU ILE ASP LYS GLY ASP ILE SEQRES 18 A 488 GLN ARG VAL LEU ASP MET SER GLN GLU SER MET GLY MET SEQRES 19 A 488 LEU LEU ASN LEU ALA ASN ILE GLN SER GLU GLY ASN TYR SEQRES 20 A 488 LEU CYS MET ASP GLU THR GLY GLY LEU LEU VAL TYR PHE SEQRES 21 A 488 LEU LEU GLU ARG MET PHE GLY GLY ASP ASN GLU SER LYS SEQRES 22 A 488 SER LYS GLY LYS VAL ILE VAL ILE HIS GLU ASN GLU HIS SEQRES 23 A 488 ALA ASN LEU ASP LEU LEU LYS PHE ALA ASN TYR SER GLU SEQRES 24 A 488 LYS PHE ILE LYS GLU HIS VAL HIS THR ILE SER LEU LEU SEQRES 25 A 488 ASP PHE PHE GLU PRO PRO THR LEU GLN GLU ILE GLN SER SEQRES 26 A 488 ARG PHE THR PRO LEU PRO LYS GLU GLU ALA ARG ALA LEU SEQRES 27 A 488 LYS GLY GLY LYS LYS ASN SER TYR TYR ARG LYS LEU ARG SEQRES 28 A 488 TRP TYR ASN THR GLN TRP GLN ILE LEU GLU LEU THR GLY SEQRES 29 A 488 GLU PHE LEU TYR ASP GLY LEU VAL MET ALA THR THR LEU SEQRES 30 A 488 HIS LEU PRO THR LEU VAL PRO LYS LEU ALA GLU LYS ILE SEQRES 31 A 488 HIS GLY SER ARG PRO ILE VAL CYS TYR GLY GLN PHE LYS SEQRES 32 A 488 GLU THR LEU LEU GLU LEU ALA HIS THR LEU TYR SER ASP SEQRES 33 A 488 LEU ARG PHE LEU ALA PRO SER ILE LEU GLU THR ARG CYS SEQRES 34 A 488 ARG PRO TYR GLN SER ILE ARG GLY LYS LEU HIS PRO LEU SEQRES 35 A 488 MET THR MET LYS GLY GLY GLY GLY TYR LEU MET TRP CYS SEQRES 36 A 488 HIS ARG VAL ILE PRO ALA PRO GLU PRO VAL SER GLU ASN SEQRES 37 A 488 ALA THR ALA ALA ASP SER SER GLU LYS LEU ALA GLU HIS SEQRES 38 A 488 GLY ALA LYS LYS GLN LYS ILE SEQRES 1 B 383 MET SER THR ASN CYS PHE SER GLY TYR LYS ASP LEU ILE SEQRES 2 B 383 LYS GLU GLY ASP LEU THR LEU ILE TRP VAL SER ARG ASP SEQRES 3 B 383 ASN ILE LYS PRO VAL ARG MET HIS SER GLU GLU VAL PHE SEQRES 4 B 383 ASN THR ARG TYR GLY SER PHE PRO HIS LYS ASP ILE ILE SEQRES 5 B 383 GLY LYS PRO TYR GLY SER GLN ILE ALA ILE ARG THR LYS SEQRES 6 B 383 GLY SER ASN LYS PHE ALA PHE VAL HIS VAL LEU GLN PRO SEQRES 7 B 383 THR PRO GLU LEU TRP THR LEU SER LEU PRO HIS ARG THR SEQRES 8 B 383 GLN ILE VAL TYR THR PRO ASP SER SER TYR ILE MET GLN SEQRES 9 B 383 ARG LEU ASN CYS SER PRO HIS SER ARG VAL ILE GLU ALA SEQRES 10 B 383 GLY THR GLY SER GLY SER PHE SER HIS ALA PHE ALA ARG SEQRES 11 B 383 SER VAL GLY HIS LEU PHE SER PHE GLU PHE HIS HIS ILE SEQRES 12 B 383 ARG TYR GLU GLN ALA LEU GLU GLU PHE LYS GLU HIS GLY SEQRES 13 B 383 LEU ILE ASP ASP ASN VAL THR ILE THR HIS ARG ASP VAL SEQRES 14 B 383 CYS GLN GLY GLY PHE LEU ILE LYS LYS GLY ASP THR THR SEQRES 15 B 383 SER TYR GLU PHE GLY ASN ASN GLU THR ALA ALA SER LEU SEQRES 16 B 383 ASN ALA ASN VAL VAL PHE LEU ASP LEU PRO ALA PRO TRP SEQRES 17 B 383 ASP ALA ILE PRO HIS LEU ASP SER VAL ILE SER VAL ASP SEQRES 18 B 383 GLU LYS VAL GLY LEU CYS CYS PHE SER PRO CYS ILE GLU SEQRES 19 B 383 GLN VAL ASP LYS THR LEU ASP VAL LEU GLU LYS TYR GLY SEQRES 20 B 383 TRP THR ASP VAL GLU MET VAL GLU ILE GLN GLY ARG GLN SEQRES 21 B 383 TYR GLU SER ARG ARG GLN MET VAL ARG SER LEU ASN ASP SEQRES 22 B 383 ALA LEU GLU ARG LEU ARG ASP ILE LYS ARG HIS LYS LEU SEQRES 23 B 383 GLN GLY VAL GLU ARG ARG LYS ARG MET PHE ASN ASN THR SEQRES 24 B 383 ILE ASP SER ASN ASP GLU LYS VAL GLY LYS ARG ASN GLU SEQRES 25 B 383 ASP GLY VAL PRO LEU THR GLU LYS ALA LYS PHE ASN PRO SEQRES 26 B 383 PHE GLY LYS GLY SER ARG ILE LYS GLU GLY ASP SER ASN SEQRES 27 B 383 TYR LYS TRP LYS GLU VAL THR LYS MET GLU ALA GLU ILE SEQRES 28 B 383 LYS SER HIS THR SER TYR LEU THR PHE ALA PHE LYS VAL SEQRES 29 B 383 VAL ASN ARG SER ARG ASP ASP GLU LYS VAL ASN GLU ILE SEQRES 30 B 383 LEU ARG SER THR GLU LYS FORMUL 3 HOH *199(H2 O) HELIX 1 AA1 GLY A 36 PHE A 38 5 3 HELIX 2 AA2 ASN A 44 ILE A 47 5 4 HELIX 3 AA3 SER A 197 GLY A 209 1 13 HELIX 4 AA4 SER A 218 ALA A 229 1 12 HELIX 5 AA5 GLY A 245 GLY A 257 1 13 HELIX 6 AA6 LEU A 279 ALA A 285 5 7 HELIX 7 AA7 SER A 288 HIS A 295 1 8 HELIX 8 AA8 LEU A 301 GLU A 306 1 6 HELIX 9 AA9 THR A 309 SER A 315 1 7 HELIX 10 AB1 LYS A 329 GLY A 354 1 26 HELIX 11 AB2 HIS A 368 THR A 371 5 4 HELIX 12 AB3 LEU A 372 ALA A 377 1 6 HELIX 13 AB4 GLU A 378 ILE A 380 5 3 HELIX 14 AB5 PHE A 392 SER A 405 1 14 HELIX 15 AB6 LYS B 49 ILE B 51 5 3 HELIX 16 AB7 THR B 79 LEU B 87 1 9 HELIX 17 AB8 TYR B 95 LEU B 106 1 12 HELIX 18 AB9 GLY B 122 VAL B 132 1 11 HELIX 19 AC1 HIS B 141 HIS B 155 1 15 HELIX 20 AC2 ASP B 168 GLY B 173 1 6 HELIX 21 AC3 ALA B 206 VAL B 217 5 12 HELIX 22 AC4 CYS B 232 TYR B 246 1 15 HELIX 23 AC5 SER B 270 HIS B 284 1 15 HELIX 24 AC6 ASP B 370 GLU B 376 1 7 SHEET 1 AA1 5 TYR A 22 GLU A 26 0 SHEET 2 AA1 5 HIS A 12 ARG A 16 -1 N VAL A 13 O VAL A 25 SHEET 3 AA1 5 TYR A 190 GLU A 194 -1 O THR A 192 N ARG A 16 SHEET 4 AA1 5 LEU A 53 TYR A 58 -1 N PHE A 55 O PHE A 191 SHEET 5 AA1 5 LYS A 82 LEU A 86 -1 O ARG A 84 N GLU A 56 SHEET 1 AA2 2 SER A 32 SER A 34 0 SHEET 2 AA2 2 ALA A 40 GLU A 42 -1 O PHE A 41 N VAL A 33 SHEET 1 AA314 VAL A 296 SER A 300 0 SHEET 2 AA314 LYS A 267 HIS A 272 1 N VAL A 270 O HIS A 297 SHEET 3 AA314 ASN A 236 ASP A 241 1 N TYR A 237 O ILE A 269 SHEET 4 AA314 LEU A 361 ALA A 364 1 O ALA A 364 N MET A 240 SHEET 5 AA314 PRO A 385 GLY A 390 1 O TYR A 389 N MET A 363 SHEET 6 AA314 TYR A 441 ARG A 447 -1 O CYS A 445 N ILE A 386 SHEET 7 AA314 PHE A 409 GLN A 423 -1 N LEU A 415 O LEU A 442 SHEET 8 AA314 THR B 249 MET B 267 -1 O GLN B 257 N ARG A 418 SHEET 9 AA314 TYR B 357 LYS B 363 -1 O LEU B 358 N VAL B 254 SHEET 10 AA314 VAL B 224 SER B 230 -1 N LEU B 226 O ALA B 361 SHEET 11 AA314 VAL B 199 LEU B 202 1 N LEU B 202 O PHE B 229 SHEET 12 AA314 ARG B 113 ALA B 117 1 N ILE B 115 O PHE B 201 SHEET 13 AA314 HIS B 134 GLU B 139 1 O PHE B 136 N VAL B 114 SHEET 14 AA314 VAL B 162 HIS B 166 1 O THR B 163 N SER B 137 SHEET 1 AA4 4 HIS A 430 PRO A 431 0 SHEET 2 AA4 4 PHE A 409 GLN A 423 -1 N GLN A 423 O HIS A 430 SHEET 3 AA4 4 THR B 249 MET B 267 -1 O GLN B 257 N ARG A 418 SHEET 4 AA4 4 TRP B 341 MET B 347 -1 O LYS B 346 N GLU B 262 SHEET 1 AA5 4 ASN B 27 ARG B 32 0 SHEET 2 AA5 4 LEU B 18 SER B 24 -1 N ILE B 21 O LYS B 29 SHEET 3 AA5 4 ALA B 71 LEU B 76 -1 O LEU B 76 N LEU B 20 SHEET 4 AA5 4 GLN B 59 ILE B 62 -1 N ILE B 60 O VAL B 73 SHEET 1 AA6 2 VAL B 38 THR B 41 0 SHEET 2 AA6 2 GLY B 44 PRO B 47 -1 O PHE B 46 N PHE B 39 CISPEP 1 ALA B 117 GLY B 118 0 0.94 CRYST1 138.645 138.645 102.727 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007213 0.004164 0.000000 0.00000 SCALE2 0.000000 0.008328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009735 0.00000