HEADER TRANSCRIPTION 13-NOV-15 5ERC TITLE X-RAY CRYSTAL STRUCTURE OF BRPF1 PZP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEREGRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PZP DOMAIN (UNP RESIDUES 274-450); COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1,PROTEIN COMPND 6 BR140; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRPF1, BR140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS READER DOMAIN, METHYLLYSINE, DNA, H3 HISTONE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.J.KLEIN,F.H.ANDREWS,T.G.KUTATELADZE REVDAT 5 06-MAR-24 5ERC 1 LINK REVDAT 4 04-DEC-19 5ERC 1 REMARK REVDAT 3 27-SEP-17 5ERC 1 JRNL REMARK REVDAT 2 20-JAN-16 5ERC 1 JRNL REVDAT 1 30-DEC-15 5ERC 0 JRNL AUTH B.J.KLEIN,U.M.MUTHURAJAN,M.E.LALONDE,M.D.GIBSON,F.H.ANDREWS, JRNL AUTH 2 M.HEPLER,S.MACHIDA,K.YAN,H.KURUMIZAKA,M.G.POIRIER,J.COTE, JRNL AUTH 3 K.LUGER,T.G.KUTATELADZE JRNL TITL BIVALENT INTERACTION OF THE PZP DOMAIN OF BRPF1 WITH THE JRNL TITL 2 NUCLEOSOME IMPACTS CHROMATIN DYNAMICS AND ACETYLATION. JRNL REF NUCLEIC ACIDS RES. V. 44 472 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26626149 JRNL DOI 10.1093/NAR/GKV1321 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.0044 - 4.4162 1.00 1580 152 0.1840 0.1966 REMARK 3 2 4.4162 - 3.5054 1.00 1452 141 0.1472 0.1744 REMARK 3 3 3.5054 - 3.0623 1.00 1435 139 0.1646 0.1835 REMARK 3 4 3.0623 - 2.7823 1.00 1409 137 0.1620 0.2302 REMARK 3 5 2.7823 - 2.5829 1.00 1413 137 0.1528 0.1713 REMARK 3 6 2.5829 - 2.4306 1.00 1406 136 0.1533 0.1810 REMARK 3 7 2.4306 - 2.3088 1.00 1372 133 0.1599 0.2021 REMARK 3 8 2.3088 - 2.2083 1.00 1404 136 0.1660 0.2180 REMARK 3 9 2.2083 - 2.1233 1.00 1376 133 0.1640 0.2073 REMARK 3 10 2.1233 - 2.0500 1.00 1372 132 0.1581 0.1984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1336 REMARK 3 ANGLE : 1.057 1818 REMARK 3 CHIRALITY : 0.045 197 REMARK 3 PLANARITY : 0.006 237 REMARK 3 DIHEDRAL : 13.753 485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 37.4117 39.5320 62.7789 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.0928 REMARK 3 T33: 0.1485 T12: -0.0172 REMARK 3 T13: -0.0435 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.0855 L22: 0.4859 REMARK 3 L33: 1.6456 L12: 0.3571 REMARK 3 L13: 1.2240 L23: 0.3705 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 0.1036 S13: 0.3372 REMARK 3 S21: -0.0070 S22: 0.0091 S23: -0.0176 REMARK 3 S31: -0.3021 S32: 0.0800 S33: 0.0588 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ERC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 63.973 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M IMIDAZOLE REMARK 280 PH 8.0, 10% PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.04333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.08667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.56500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 122.60833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.52167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.04333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.08667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 122.60833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 73.56500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.52167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 665 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 748 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 428 REMARK 465 THR A 429 REMARK 465 GLY A 430 REMARK 465 ALA A 431 REMARK 465 ASN A 432 REMARK 465 GLY A 433 REMARK 465 THR A 434 REMARK 465 SER A 435 REMARK 465 PHE A 436 REMARK 465 SER A 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 752 O HOH A 755 2.13 REMARK 500 O HOH A 702 O HOH A 751 2.17 REMARK 500 N VAL A 438 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 713 O HOH A 738 10665 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 288 69.42 -105.83 REMARK 500 SER A 323 76.78 65.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 276 SG REMARK 620 2 CYS A 279 SG 107.3 REMARK 620 3 HIS A 301 ND1 98.4 88.7 REMARK 620 4 CYS A 304 SG 122.6 113.1 120.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 293 SG REMARK 620 2 CYS A 296 SG 109.8 REMARK 620 3 CYS A 317 SG 114.4 113.9 REMARK 620 4 CYS A 320 SG 103.8 109.1 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 330 SG REMARK 620 2 CYS A 333 SG 112.9 REMARK 620 3 HIS A 350 ND1 102.4 94.9 REMARK 620 4 CYS A 353 SG 121.3 108.8 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 346 O REMARK 620 2 GLY A 346 O 0.0 REMARK 620 3 HOH A 693 O 74.9 74.9 REMARK 620 4 HOH A 693 O 150.0 150.0 135.1 REMARK 620 5 HOH A 713 O 93.4 93.4 89.6 88.1 REMARK 620 6 HOH A 713 O 91.2 91.2 88.1 89.6 174.1 REMARK 620 7 HOH A 748 O 142.4 142.4 67.5 67.6 87.0 87.1 REMARK 620 8 HOH A 748 O 142.5 142.5 67.5 67.5 87.0 87.1 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 386 SG REMARK 620 2 CYS A 389 SG 108.7 REMARK 620 3 HIS A 410 ND1 103.3 99.7 REMARK 620 4 CYS A 413 SG 113.3 116.0 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 CYS A 405 SG 110.0 REMARK 620 3 CYS A 444 SG 114.7 115.1 REMARK 620 4 HIS A 447 ND1 110.5 103.0 102.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 DBREF 5ERC A 274 450 UNP P55201 BRPF1_HUMAN 274 450 SEQRES 1 A 177 ALA VAL CYS CYS ILE CYS ASN ASP GLY GLU CYS GLN ASN SEQRES 2 A 177 SER ASN VAL ILE LEU PHE CYS ASP MET CYS ASN LEU ALA SEQRES 3 A 177 VAL HIS GLN GLU CYS TYR GLY VAL PRO TYR ILE PRO GLU SEQRES 4 A 177 GLY GLN TRP LEU CYS ARG ARG CYS LEU GLN SER PRO SER SEQRES 5 A 177 ARG ALA VAL ASP CYS ALA LEU CYS PRO ASN LYS GLY GLY SEQRES 6 A 177 ALA PHE LYS GLN THR ASP ASP GLY ARG TRP ALA HIS VAL SEQRES 7 A 177 VAL CYS ALA LEU TRP ILE PRO GLU VAL CYS PHE ALA ASN SEQRES 8 A 177 THR VAL PHE LEU GLU PRO ILE ASP SER ILE GLU HIS ILE SEQRES 9 A 177 PRO PRO ALA ARG TRP LYS LEU THR CYS TYR ILE CYS LYS SEQRES 10 A 177 GLN ARG GLY SER GLY ALA CYS ILE GLN CYS HIS LYS ALA SEQRES 11 A 177 ASN CYS TYR THR ALA PHE HIS VAL THR CYS ALA GLN GLN SEQRES 12 A 177 ALA GLY LEU TYR MET LYS MET GLU PRO VAL ARG GLU THR SEQRES 13 A 177 GLY ALA ASN GLY THR SER PHE SER VAL ARG LYS THR ALA SEQRES 14 A 177 TYR CYS ASP ILE HIS THR PRO PRO HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET CA A 506 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN 5(ZN 2+) FORMUL 7 CA CA 2+ FORMUL 8 HOH *156(H2 O) HELIX 1 AA1 GLN A 302 GLY A 306 1 5 HELIX 2 AA2 CYS A 317 GLN A 322 1 6 HELIX 3 AA3 VAL A 351 ILE A 357 1 7 HELIX 4 AA4 SER A 373 PRO A 378 5 6 HELIX 5 AA5 PRO A 379 LEU A 384 1 6 HELIX 6 AA6 HIS A 410 ALA A 417 1 8 SHEET 1 AA1 2 ILE A 290 PHE A 292 0 SHEET 2 AA1 2 ALA A 299 HIS A 301 -1 O VAL A 300 N LEU A 291 SHEET 1 AA2 2 PHE A 340 GLN A 342 0 SHEET 2 AA2 2 TRP A 348 HIS A 350 -1 O ALA A 349 N LYS A 341 SHEET 1 AA3 2 CYS A 361 ASN A 364 0 SHEET 2 AA3 2 GLU A 369 ASP A 372 -1 O ASP A 372 N CYS A 361 SHEET 1 AA4 2 ILE A 398 GLN A 399 0 SHEET 2 AA4 2 ALA A 408 PHE A 409 -1 O PHE A 409 N ILE A 398 SHEET 1 AA5 2 TYR A 420 GLU A 424 0 SHEET 2 AA5 2 ARG A 439 TYR A 443 -1 O ARG A 439 N GLU A 424 LINK SG CYS A 276 ZN ZN A 502 1555 1555 2.21 LINK SG CYS A 279 ZN ZN A 502 1555 1555 2.45 LINK SG CYS A 293 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 296 ZN ZN A 501 1555 1555 2.35 LINK ND1 HIS A 301 ZN ZN A 502 1555 1555 2.23 LINK SG CYS A 304 ZN ZN A 502 1555 1555 2.23 LINK SG CYS A 317 ZN ZN A 501 1555 1555 2.38 LINK SG CYS A 320 ZN ZN A 501 1555 1555 2.20 LINK SG CYS A 330 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 333 ZN ZN A 503 1555 1555 2.27 LINK O GLY A 346 CA CA A 506 1555 1555 2.37 LINK O GLY A 346 CA CA A 506 1555 10665 2.37 LINK ND1 HIS A 350 ZN ZN A 503 1555 1555 2.11 LINK SG CYS A 353 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 386 ZN ZN A 504 1555 1555 2.34 LINK SG CYS A 389 ZN ZN A 504 1555 1555 2.35 LINK SG CYS A 400 ZN ZN A 505 1555 1555 2.27 LINK SG CYS A 405 ZN ZN A 505 1555 1555 2.34 LINK ND1 HIS A 410 ZN ZN A 504 1555 1555 2.15 LINK SG CYS A 413 ZN ZN A 504 1555 1555 2.25 LINK SG CYS A 444 ZN ZN A 505 1555 1555 2.33 LINK ND1 HIS A 447 ZN ZN A 505 1555 1555 2.05 LINK CA CA A 506 O HOH A 693 1555 1555 2.52 LINK CA CA A 506 O HOH A 693 1555 10665 2.52 LINK CA CA A 506 O HOH A 713 1555 1555 2.36 LINK CA CA A 506 O HOH A 713 1555 10665 2.36 LINK CA CA A 506 O HOH A 748 1555 1555 2.48 LINK CA CA A 506 O HOH A 748 1555 10665 2.48 CISPEP 1 GLU A 369 PRO A 370 0 -16.59 SITE 1 AC1 4 CYS A 293 CYS A 296 CYS A 317 CYS A 320 SITE 1 AC2 4 CYS A 276 CYS A 279 HIS A 301 CYS A 304 SITE 1 AC3 4 CYS A 330 CYS A 333 HIS A 350 CYS A 353 SITE 1 AC4 4 CYS A 386 CYS A 389 HIS A 410 CYS A 413 SITE 1 AC5 4 CYS A 400 CYS A 405 CYS A 444 HIS A 447 SITE 1 AC6 4 GLY A 346 HOH A 693 HOH A 713 HOH A 748 CRYST1 73.870 73.870 147.130 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013537 0.007816 0.000000 0.00000 SCALE2 0.000000 0.015632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006797 0.00000