HEADER SIGNALING PROTEIN 14-NOV-15 5ERE TITLE EXTRACELLULAR LIGAND BINDING RECEPTOR FROM DESULFOHALOBIUM RETBAENSE TITLE 2 DSM5692 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR LIGAND-BINDING RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-599; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOHALOBIUM RETBAENSE DSM 5692; SOURCE 3 ORGANISM_TAXID: 485915; SOURCE 4 STRAIN: DSM 5692; SOURCE 5 GENE: DRET_0059; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SOLUTE BINDING PROTEIN, TANDEM PAS SENSOR, KETOLEUCINE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CUFF,R.WU,M.ENDRES,P.R.POKKULURI,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 23-OCT-24 5ERE 1 REMARK REVDAT 1 10-AUG-16 5ERE 0 JRNL AUTH A.JOACHIMIAK JRNL TITL A NOVEL EXTRACELLULAR LIGAND RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1914 - 5.3298 0.99 2880 146 0.1655 0.2023 REMARK 3 2 5.3298 - 4.2332 1.00 2769 139 0.1258 0.1674 REMARK 3 3 4.2332 - 3.6989 1.00 2720 140 0.1421 0.2103 REMARK 3 4 3.6989 - 3.3611 1.00 2694 142 0.1736 0.2272 REMARK 3 5 3.3611 - 3.1203 1.00 2684 147 0.1811 0.2295 REMARK 3 6 3.1203 - 2.9365 1.00 2667 144 0.1842 0.2875 REMARK 3 7 2.9365 - 2.7895 1.00 2692 118 0.1900 0.3035 REMARK 3 8 2.7895 - 2.6681 1.00 2658 153 0.1788 0.2102 REMARK 3 9 2.6681 - 2.5655 1.00 2644 150 0.1787 0.2176 REMARK 3 10 2.5655 - 2.4770 1.00 2648 139 0.1755 0.2123 REMARK 3 11 2.4770 - 2.3995 1.00 2636 143 0.1802 0.2535 REMARK 3 12 2.3995 - 2.3310 1.00 2643 138 0.1815 0.2265 REMARK 3 13 2.3310 - 2.2696 1.00 2642 143 0.2031 0.2505 REMARK 3 14 2.2696 - 2.2143 1.00 2609 160 0.1999 0.2248 REMARK 3 15 2.2143 - 2.1639 1.00 2663 120 0.2027 0.2687 REMARK 3 16 2.1639 - 2.1179 1.00 2605 157 0.2264 0.2403 REMARK 3 17 2.1179 - 2.0755 1.00 2625 150 0.2391 0.2965 REMARK 3 18 2.0755 - 2.0364 1.00 2594 151 0.2679 0.3354 REMARK 3 19 2.0364 - 2.0000 0.99 2631 131 0.3141 0.3651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4182 REMARK 3 ANGLE : 1.286 5674 REMARK 3 CHIRALITY : 0.055 651 REMARK 3 PLANARITY : 0.006 745 REMARK 3 DIHEDRAL : 15.423 1454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8101 11.3308 15.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.2979 REMARK 3 T33: 0.3071 T12: -0.1345 REMARK 3 T13: -0.0334 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.3883 L22: 0.4904 REMARK 3 L33: 2.3452 L12: -0.1511 REMARK 3 L13: 0.1044 L23: 0.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0059 S13: -0.0642 REMARK 3 S21: -0.0242 S22: 0.0737 S23: -0.0125 REMARK 3 S31: 0.3360 S32: -0.1809 S33: 0.0050 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 593 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9763 9.9955 57.9147 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.2648 REMARK 3 T33: 0.3061 T12: 0.0309 REMARK 3 T13: 0.0122 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.4138 L22: 0.5465 REMARK 3 L33: 0.9242 L12: -0.2414 REMARK 3 L13: -0.5271 L23: 0.3803 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: -0.0288 S13: 0.0792 REMARK 3 S21: 0.2077 S22: 0.1890 S23: -0.0539 REMARK 3 S31: 0.0673 S32: -0.0320 S33: -0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ERE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 43.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG-4 #95 (H11): 0.2M CALCIUM REMARK 280 ACETATE, 0.1 M HEPES PH 7.5, 10% PEG8000, 25% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.09050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.47300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.04525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.47300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.13575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.47300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.04525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.47300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.13575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.09050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 533 REMARK 465 PRO A 534 REMARK 465 ILE A 535 REMARK 465 TYR A 536 REMARK 465 ASP A 537 REMARK 465 ALA A 538 REMARK 465 PHE A 539 REMARK 465 PRO A 540 REMARK 465 SER A 541 REMARK 465 LEU A 542 REMARK 465 LYS A 543 REMARK 465 ARG A 544 REMARK 465 PHE A 561 REMARK 465 GLN A 562 REMARK 465 ASP A 563 REMARK 465 ARG A 564 REMARK 465 HIS A 565 REMARK 465 MSE A 566 REMARK 465 GLU A 567 REMARK 465 HIS A 568 REMARK 465 ALA A 569 REMARK 465 VAL A 570 REMARK 465 ALA A 594 REMARK 465 GLY A 595 REMARK 465 GLU A 596 REMARK 465 ILE A 597 REMARK 465 GLU A 598 REMARK 465 ASP A 599 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ASN A 94 CG OD1 ND2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 GLU A 346 CG CD OE1 OE2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 GLN A 476 CG CD OE1 NE2 REMARK 470 PHE A 531 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 545 CG1 CG2 CD1 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 GLN A 552 CG CD OE1 NE2 REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 573 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 857 O HOH A 903 2.17 REMARK 500 O HOH A 841 O HOH A 877 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 62.88 64.83 REMARK 500 ASN A 94 42.92 -88.90 REMARK 500 SER A 102 140.35 101.56 REMARK 500 ALA A 127 42.74 -108.98 REMARK 500 THR A 136 114.57 73.78 REMARK 500 ALA A 187 137.18 -171.91 REMARK 500 ALA A 218 -134.36 -95.38 REMARK 500 ALA A 251 30.37 -93.31 REMARK 500 GLN A 306 -34.43 -149.04 REMARK 500 ASP A 514 11.35 -64.71 REMARK 500 TYR A 559 -164.77 -128.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 923 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 313 O REMARK 620 2 GLU A 313 OE2 84.1 REMARK 620 3 ALA A 316 O 98.3 89.4 REMARK 620 4 ASN A 318 OD1 103.5 169.7 82.6 REMARK 620 5 GLU A 400 OE1 134.2 76.4 41.6 93.3 REMARK 620 6 HOH A 782 O 86.2 104.4 165.8 83.3 138.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COI A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110497 RELATED DB: TARGETTRACK DBREF 5ERE A 32 599 UNP C8WZ86 C8WZ86_DESRD 32 599 SEQRES 1 A 568 LYS PRO VAL VAL GLY VAL ILE LEU PRO PHE SER SER ALA SEQRES 2 A 568 PHE GLU ASP ILE ALA VAL GLU GLN GLN ARG ALA VAL GLU SEQRES 3 A 568 LEU ALA LEU ALA GLU SER GLY SER ALA PHE GLU ILE VAL SEQRES 4 A 568 PHE LYS ASP GLY GLY ALA ASP VAL ASP THR ALA VAL GLN SEQRES 5 A 568 ALA PHE GLN ASP LEU VAL ARG SER GLN GLU ASN LEU ALA SEQRES 6 A 568 ALA VAL VAL SER CYS SER SER TRP ALA SER SER ALA ILE SEQRES 7 A 568 HIS PRO LEU ALA ALA GLU LYS ASP ILE PHE HIS VAL ALA SEQRES 8 A 568 ILE GLY SER ALA ALA LEU LYS ARG THR GLU PRO GLY HIS SEQRES 9 A 568 THR ILE ARG LEU THR VAL GLY VAL GLN GLN GLU GLN GLU SEQRES 10 A 568 GLN LEU ALA ALA TYR LEU THR ASP PHE GLU ARG ILE ALA SEQRES 11 A 568 VAL LEU ALA MSE ASP ASN ASN LEU GLY SER SER TRP ILE SEQRES 12 A 568 ARG MSE LEU GLU ASP ARG PHE PRO LYS GLN VAL VAL ALA SEQRES 13 A 568 ALA GLN GLU TYR ASN PRO GLN GLN MSE ASP ILE ALA ALA SEQRES 14 A 568 GLN LEU ALA THR ILE LYS ALA ARG ASP SER GLU ALA LEU SEQRES 15 A 568 VAL LEU ILE SER ALA GLY GLU ALA ALA THR ILE ALA LYS SEQRES 16 A 568 GLN ALA ARG GLN ALA GLY ILE LYS ALA GLN LEU VAL GLY SEQRES 17 A 568 THR ARG PRO ILE GLN ARG ALA GLU VAL LEU ALA ALA SER SEQRES 18 A 568 ALA PHE THR ASN GLY LEU VAL TYR THR TYR PRO SER TYR SEQRES 19 A 568 ASN GLN ASP HIS PRO PHE MSE SER ALA PHE THR ASP ARG SEQRES 20 A 568 TYR GLY LEU GLU PRO GLY PHE PHE GLY VAL GLU ALA TYR SEQRES 21 A 568 ASP LEU CYS THR THR LEU SER ARG ALA LEU GLU GLN GLY SEQRES 22 A 568 ARG GLN THR PRO LYS ALA LEU PHE GLU TRP TYR ALA GLY SEQRES 23 A 568 ASN THR PHE THR GLY ALA LEU GLY LYS VAL THR PHE ALA SEQRES 24 A 568 ASN ASP GLY ASP ALA SER TYR PRO TYR ILE PHE LYS LYS SEQRES 25 A 568 VAL THR GLU SER GLY PHE ARG VAL ALA GLU PHE GLN PHE SEQRES 26 A 568 PRO MSE LEU LEU THR GLN THR ALA GLN GLU LEU ASN ALA SEQRES 27 A 568 ILE PHE LYS ASP MSE ASP ARG SER VAL ALA ALA ALA ALA SEQRES 28 A 568 GLU GLN LEU SER THR THR GLY LEU ARG GLY ASP ARG ALA SEQRES 29 A 568 SER ALA ILE LEU GLU THR LEU PHE ASN GLU ASN GLN TYR SEQRES 30 A 568 ALA TYR ASN CYS VAL THR VAL ASP ALA THR GLY THR ILE SEQRES 31 A 568 VAL ASN VAL ALA PRO LYS GLN TYR SER SER VAL ILE GLY SEQRES 32 A 568 GLU ASP ILE SER GLY GLN GLU GLN ILE ILE ARG LEU HIS SEQRES 33 A 568 GLU THR HIS GLN PRO VAL LEU SER GLN ALA ILE LYS MSE SEQRES 34 A 568 VAL GLU GLY PHE VAL GLY ILE ASP LEU GLU HIS PRO VAL SEQRES 35 A 568 PHE ASP GLN ASP GLY GLY PHE ILE GLY SER VAL SER VAL SEQRES 36 A 568 LEU THR GLN PRO ASP PHE PHE GLY SER ILE ILE SER ARG SEQRES 37 A 568 LYS VAL HIS ASN PHE PRO VAL GLU ILE PHE VAL LEU GLN SEQRES 38 A 568 ARG ASP GLY THR THR ILE TYR ASP VAL ASN ALA GLU GLU SEQRES 39 A 568 ILE GLY LYS ASN ALA PHE ALA ASP PRO ILE TYR ASP ALA SEQRES 40 A 568 PHE PRO SER LEU LYS ARG ILE ALA ARG LYS MSE VAL SER SEQRES 41 A 568 GLN ALA GLU GLY GLU GLY THR TYR ARG PHE GLN ASP ARG SEQRES 42 A 568 HIS MSE GLU HIS ALA VAL ALA LYS GLN LEU LEU TRP THR SEQRES 43 A 568 SER ILE GLY LEU HIS GLY THR ASN TYR ARG LEU ALA LEU SEQRES 44 A 568 THR TYR GLY ALA GLY GLU ILE GLU ASP MODRES 5ERE MSE A 165 MET MODIFIED RESIDUE MODRES 5ERE MSE A 176 MET MODIFIED RESIDUE MODRES 5ERE MSE A 196 MET MODIFIED RESIDUE MODRES 5ERE MSE A 272 MET MODIFIED RESIDUE MODRES 5ERE MSE A 358 MET MODIFIED RESIDUE MODRES 5ERE MSE A 374 MET MODIFIED RESIDUE MODRES 5ERE MSE A 460 MET MODIFIED RESIDUE MODRES 5ERE MSE A 549 MET MODIFIED RESIDUE HET MSE A 165 8 HET MSE A 176 8 HET MSE A 196 8 HET MSE A 272 8 HET MSE A 358 8 HET MSE A 374 8 HET MSE A 460 8 HET MSE A 549 8 HET COI A 601 9 HET CYT A 602 8 HET ACY A 603 4 HET CA A 604 1 HET GOL A 605 6 HET EDO A 606 4 HET EDO A 607 4 HETNAM MSE SELENOMETHIONINE HETNAM COI 2-OXO-4-METHYLPENTANOIC ACID HETNAM CYT 6-AMINOPYRIMIDIN-2(1H)-ONE HETNAM ACY ACETIC ACID HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN COI ALPHA-KETOISOCAPROIC ACID HETSYN CYT CYTOSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 COI C6 H10 O3 FORMUL 3 CYT C4 H5 N3 O FORMUL 4 ACY C2 H4 O2 FORMUL 5 CA CA 2+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *223(H2 O) HELIX 1 AA1 PHE A 45 GLY A 64 1 20 HELIX 2 AA2 ASP A 77 GLN A 92 1 16 HELIX 3 AA3 SER A 102 LYS A 116 1 15 HELIX 4 AA4 GLY A 142 THR A 155 1 14 HELIX 5 AA5 ASN A 167 PHE A 181 1 15 HELIX 6 AA6 ILE A 198 ALA A 207 1 10 HELIX 7 AA7 GLU A 220 ALA A 231 1 12 HELIX 8 AA8 THR A 240 GLN A 244 5 5 HELIX 9 AA9 ARG A 245 ALA A 251 1 7 HELIX 10 AB1 ALA A 251 ASN A 256 1 6 HELIX 11 AB2 HIS A 269 GLY A 280 1 12 HELIX 12 AB3 GLY A 284 GLN A 303 1 20 HELIX 13 AB4 THR A 307 ALA A 316 1 10 HELIX 14 AB5 PHE A 354 GLY A 389 1 36 HELIX 15 AB6 GLY A 392 ASN A 406 1 15 HELIX 16 AB7 PRO A 426 ILE A 433 5 8 HELIX 17 AB8 GLN A 440 HIS A 450 1 11 HELIX 18 AB9 ASP A 491 HIS A 502 1 12 HELIX 19 AC1 ASN A 522 ILE A 526 5 5 HELIX 20 AC2 ALA A 546 GLN A 552 1 7 SHEET 1 AA1 5 GLU A 68 ASP A 73 0 SHEET 2 AA1 5 VAL A 34 LEU A 39 1 N VAL A 35 O GLU A 68 SHEET 3 AA1 5 LEU A 95 CYS A 101 1 O VAL A 99 N GLY A 36 SHEET 4 AA1 5 PHE A 119 ILE A 123 1 O PHE A 119 N VAL A 98 SHEET 5 AA1 5 ILE A 137 ARG A 138 1 O ILE A 137 N ALA A 122 SHEET 1 AA2 7 VAL A 185 TYR A 191 0 SHEET 2 AA2 7 ILE A 160 MSE A 165 1 N VAL A 162 O GLN A 189 SHEET 3 AA2 7 ALA A 212 ILE A 216 1 O VAL A 214 N ALA A 161 SHEET 4 AA2 7 GLN A 236 GLY A 239 1 O VAL A 238 N LEU A 215 SHEET 5 AA2 7 VAL A 259 PRO A 263 1 O VAL A 259 N GLY A 239 SHEET 6 AA2 7 TYR A 339 THR A 345 -1 O ILE A 340 N TYR A 262 SHEET 7 AA2 7 GLY A 348 VAL A 351 -1 O ARG A 350 N LYS A 343 SHEET 1 AA3 3 THR A 319 GLY A 322 0 SHEET 2 AA3 3 GLY A 325 PHE A 329 -1 O VAL A 327 N PHE A 320 SHEET 3 AA3 3 ALA A 335 SER A 336 -1 O SER A 336 N THR A 328 SHEET 1 AA4 5 ILE A 421 ALA A 425 0 SHEET 2 AA4 5 ALA A 409 ASP A 416 -1 N CYS A 412 O ALA A 425 SHEET 3 AA4 5 PHE A 480 THR A 488 -1 O LEU A 487 N TYR A 410 SHEET 4 AA4 5 ASP A 468 PHE A 474 -1 N VAL A 473 O GLY A 482 SHEET 5 AA4 5 VAL A 453 LEU A 454 -1 N VAL A 453 O GLU A 470 SHEET 1 AA5 2 ILE A 458 LYS A 459 0 SHEET 2 AA5 2 VAL A 465 GLY A 466 -1 O GLY A 466 N ILE A 458 SHEET 1 AA6 5 THR A 517 TYR A 519 0 SHEET 2 AA6 5 GLU A 507 LEU A 511 -1 N VAL A 510 O ILE A 518 SHEET 3 AA6 5 THR A 584 TYR A 592 -1 O ARG A 587 N LEU A 511 SHEET 4 AA6 5 LYS A 572 LEU A 581 -1 N ILE A 579 O TYR A 586 SHEET 5 AA6 5 GLY A 555 TYR A 559 -1 N GLY A 557 O LEU A 574 LINK C ALA A 164 N MSE A 165 1555 1555 1.32 LINK C MSE A 165 N ASP A 166 1555 1555 1.33 LINK C ARG A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N LEU A 177 1555 1555 1.32 LINK C GLN A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N ASP A 197 1555 1555 1.32 LINK C PHE A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N SER A 273 1555 1555 1.32 LINK C PRO A 357 N MSE A 358 1555 1555 1.32 LINK C MSE A 358 N LEU A 359 1555 1555 1.32 LINK C ASP A 373 N MSE A 374 1555 1555 1.32 LINK C MSE A 374 N ASP A 375 1555 1555 1.33 LINK C LYS A 459 N MSE A 460 1555 1555 1.32 LINK C MSE A 460 N VAL A 461 1555 1555 1.34 LINK C LYS A 548 N MSE A 549 1555 1555 1.33 LINK C MSE A 549 N VAL A 550 1555 1555 1.33 LINK O GLU A 313 CA CA A 604 1555 1555 2.25 LINK OE2 GLU A 313 CA CA A 604 1555 1555 2.35 LINK O ALA A 316 CA CA A 604 1555 1555 2.40 LINK OD1 ASN A 318 CA CA A 604 1555 1555 2.33 LINK OE1 GLU A 400 CA CA A 604 1555 3545 2.35 LINK CA CA A 604 O HOH A 782 1555 4554 2.44 CISPEP 1 ALA A 425 PRO A 426 0 -4.26 SITE 1 AC1 7 SER A 103 GLY A 124 SER A 125 ALA A 126 SITE 2 AC1 7 LEU A 169 ARG A 241 PHE A 286 SITE 1 AC2 9 ASN A 411 ILE A 437 GLN A 440 MSE A 460 SITE 2 AC2 9 VAL A 461 GLU A 462 ASP A 468 SER A 485 SITE 3 AC2 9 HOH A 802 SITE 1 AC3 9 PRO A 490 ASP A 491 PHE A 492 PHE A 493 SITE 2 AC3 9 GLY A 494 ILE A 518 TYR A 519 HOH A 730 SITE 3 AC3 9 HOH A 758 SITE 1 AC4 5 GLU A 313 ALA A 316 ASN A 318 GLU A 400 SITE 2 AC4 5 HOH A 782 SITE 1 AC5 3 ARG A 245 ALA A 246 GLU A 282 SITE 1 AC6 6 ALA A 126 LEU A 128 ARG A 138 VAL A 143 SITE 2 AC6 6 GLN A 144 MSE A 176 SITE 1 AC7 3 LYS A 343 GLU A 353 PHE A 354 CRYST1 104.946 104.946 140.181 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007134 0.00000