HEADER TRANSFERASE 15-NOV-15 5ERS TITLE GEPHE IN COMPLEX WITH MG(2+) - AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEPHYRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 318-736; COMPND 5 SYNONYM: PUTATIVE GLYCINE RECEPTOR-TUBULIN LINKER PROTEIN; COMPND 6 EC: 2.7.7.75,2.10.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GPHN, GPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MOCO AND WCO BIOSYNTHESIS, MOCO, AMP WITH MG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.B.KASARAGOD,H.SCHINDELIN REVDAT 3 10-JAN-24 5ERS 1 LINK REVDAT 2 11-MAY-16 5ERS 1 JRNL REVDAT 1 04-MAY-16 5ERS 0 JRNL AUTH V.B.KASARAGOD,H.SCHINDELIN JRNL TITL STRUCTURAL FRAMEWORK FOR METAL INCORPORATION DURING JRNL TITL 2 MOLYBDENUM COFACTOR BIOSYNTHESIS. JRNL REF STRUCTURE V. 24 782 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27112598 JRNL DOI 10.1016/J.STR.2016.02.023 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6601 - 4.4543 1.00 3019 160 0.1606 0.2020 REMARK 3 2 4.4543 - 3.5358 1.00 2894 158 0.1220 0.1524 REMARK 3 3 3.5358 - 3.0890 1.00 2878 151 0.1339 0.1456 REMARK 3 4 3.0890 - 2.8066 1.00 2859 139 0.1361 0.1503 REMARK 3 5 2.8066 - 2.6054 1.00 2880 136 0.1382 0.1584 REMARK 3 6 2.6054 - 2.4518 1.00 2857 150 0.1420 0.1765 REMARK 3 7 2.4518 - 2.3290 1.00 2822 153 0.1346 0.1721 REMARK 3 8 2.3290 - 2.2276 1.00 2842 134 0.1410 0.1768 REMARK 3 9 2.2276 - 2.1419 1.00 2841 146 0.1506 0.1795 REMARK 3 10 2.1419 - 2.0680 1.00 2817 134 0.1509 0.1641 REMARK 3 11 2.0680 - 2.0033 1.00 2856 141 0.1640 0.1657 REMARK 3 12 2.0033 - 1.9460 1.00 2826 147 0.1751 0.2168 REMARK 3 13 1.9460 - 1.8948 1.00 2825 133 0.1870 0.2070 REMARK 3 14 1.8948 - 1.8486 1.00 2836 128 0.1989 0.2139 REMARK 3 15 1.8486 - 1.8066 1.00 2810 142 0.2111 0.2208 REMARK 3 16 1.8066 - 1.7681 1.00 2824 131 0.2261 0.2452 REMARK 3 17 1.7681 - 1.7327 1.00 2819 147 0.2517 0.2905 REMARK 3 18 1.7327 - 1.7000 1.00 2808 151 0.2761 0.3017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3394 REMARK 3 ANGLE : 1.370 4643 REMARK 3 CHIRALITY : 0.054 539 REMARK 3 PLANARITY : 0.008 610 REMARK 3 DIHEDRAL : 13.931 1314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.8512 130.1645 219.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1433 REMARK 3 T33: 0.1473 T12: 0.0412 REMARK 3 T13: -0.0045 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.2451 L22: 0.4441 REMARK 3 L33: 0.3730 L12: 0.3028 REMARK 3 L13: 0.2325 L23: 0.0253 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.0720 S13: -0.0707 REMARK 3 S21: -0.0725 S22: 0.0465 S23: -0.1309 REMARK 3 S31: -0.0104 S32: 0.1952 S33: 0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.5341 130.4513 265.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.2129 REMARK 3 T33: 0.1343 T12: -0.0576 REMARK 3 T13: 0.0192 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.5639 L22: 0.1843 REMARK 3 L33: 0.2548 L12: 0.4015 REMARK 3 L13: -0.5622 L23: -0.3612 REMARK 3 S TENSOR REMARK 3 S11: 0.1738 S12: -0.1328 S13: -0.0171 REMARK 3 S21: 0.0893 S22: -0.1234 S23: 0.0208 REMARK 3 S31: -0.1350 S32: 0.1283 S33: 0.0134 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.2698 127.3012 265.2437 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1717 REMARK 3 T33: 0.1841 T12: -0.0200 REMARK 3 T13: 0.0324 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.3095 L22: 0.2667 REMARK 3 L33: 0.1742 L12: 0.4184 REMARK 3 L13: -0.1332 L23: -0.3535 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.0923 S13: -0.0197 REMARK 3 S21: 0.0493 S22: -0.0605 S23: 0.0868 REMARK 3 S31: -0.0293 S32: 0.0496 S33: -0.0107 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.6907 138.7169 217.7479 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.1037 REMARK 3 T33: 0.1063 T12: 0.0092 REMARK 3 T13: -0.0001 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1837 L22: 0.0126 REMARK 3 L33: 0.2972 L12: 0.0470 REMARK 3 L13: 0.0673 L23: 0.0447 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0290 S13: -0.0067 REMARK 3 S21: -0.0109 S22: -0.0104 S23: -0.0113 REMARK 3 S31: -0.0279 S32: 0.0542 S33: 0.0060 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 551 THROUGH 581 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.2845 140.8710 203.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.1939 REMARK 3 T33: 0.1504 T12: -0.0197 REMARK 3 T13: -0.0058 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2827 L22: 0.3032 REMARK 3 L33: 0.0748 L12: 0.0907 REMARK 3 L13: 0.0388 L23: -0.1196 REMARK 3 S TENSOR REMARK 3 S11: -0.1039 S12: 0.2018 S13: 0.1245 REMARK 3 S21: -0.1230 S22: 0.0764 S23: -0.0228 REMARK 3 S31: 0.0245 S32: 0.1316 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 582 THROUGH 679 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.5885 125.6136 211.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1085 REMARK 3 T33: 0.1333 T12: 0.0267 REMARK 3 T13: 0.0033 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.2680 L22: 0.5497 REMARK 3 L33: 0.5547 L12: 0.1816 REMARK 3 L13: -0.1224 L23: -0.2385 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.0119 S13: -0.0552 REMARK 3 S21: -0.0486 S22: 0.0328 S23: -0.0566 REMARK 3 S31: 0.1003 S32: 0.0936 S33: 0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 680 THROUGH 707 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.6852 115.3126 216.9208 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.2689 REMARK 3 T33: 0.3443 T12: -0.0324 REMARK 3 T13: -0.0250 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 0.1531 L22: 0.1611 REMARK 3 L33: 0.0191 L12: 0.1604 REMARK 3 L13: -0.0061 L23: 0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: 0.3501 S13: 0.2283 REMARK 3 S21: 0.0055 S22: 0.3509 S23: 0.6202 REMARK 3 S31: 0.0833 S32: -0.5157 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 708 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.3868 110.5020 212.1673 REMARK 3 T TENSOR REMARK 3 T11: 0.2307 T22: 0.0954 REMARK 3 T33: 0.2069 T12: 0.0106 REMARK 3 T13: 0.0262 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.2118 L22: 0.2931 REMARK 3 L33: 0.2714 L12: 0.2214 REMARK 3 L13: -0.0962 L23: -0.2804 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.0678 S13: -0.1292 REMARK 3 S21: -0.0295 S22: -0.0010 S23: 0.0223 REMARK 3 S31: 0.0991 S32: 0.0501 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ERS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 1.08100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 34% MPD, PH 4.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.50100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.63900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.39550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.50100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.63900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.39550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.50100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.63900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.39550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.50100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.63900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.39550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 174.00400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 451.16400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CM MPD A 808 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1255 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1324 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1342 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1389 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1393 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 318 REMARK 465 ASN A 694 REMARK 465 GLN A 695 REMARK 465 MET A 696 REMARK 465 SER A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 MPD A 808 O HOH A 901 2.02 REMARK 500 O HOH A 1215 O HOH A 1315 2.11 REMARK 500 O HOH A 1274 O HOH A 1341 2.17 REMARK 500 OG SER A 575 O HOH A 902 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 956 O HOH A 1038 3759 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 579 23.94 48.04 REMARK 500 HIS A 682 -109.44 40.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1393 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1394 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 801 O2P REMARK 620 2 HOH A 929 O 93.9 REMARK 620 3 HOH A1028 O 174.0 90.7 REMARK 620 4 HOH A1044 O 93.2 90.4 90.7 REMARK 620 5 HOH A1157 O 91.6 173.4 84.1 85.6 REMARK 620 6 HOH A1170 O 92.0 86.8 84.2 174.1 96.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 809 DBREF 5ERS A 318 736 UNP Q03555 GEPH_RAT 318 736 SEQRES 1 A 419 MET SER PRO PHE PRO LEU THR SER MET ASP LYS ALA PHE SEQRES 2 A 419 ILE THR VAL LEU GLU MET THR PRO VAL LEU GLY THR GLU SEQRES 3 A 419 ILE ILE ASN TYR ARG ASP GLY MET GLY ARG VAL LEU ALA SEQRES 4 A 419 GLN ASP VAL TYR ALA LYS ASP ASN LEU PRO PRO PHE PRO SEQRES 5 A 419 ALA SER VAL LYS ASP GLY TYR ALA VAL ARG ALA ALA ASP SEQRES 6 A 419 GLY PRO GLY ASP ARG PHE ILE ILE GLY GLU SER GLN ALA SEQRES 7 A 419 GLY GLU GLN PRO THR GLN THR VAL MET PRO GLY GLN VAL SEQRES 8 A 419 MET ARG VAL THR THR GLY ALA PRO ILE PRO CYS GLY ALA SEQRES 9 A 419 ASP ALA VAL VAL GLN VAL GLU ASP THR GLU LEU ILE ARG SEQRES 10 A 419 GLU SER ASP ASP GLY THR GLU GLU LEU GLU VAL ARG ILE SEQRES 11 A 419 LEU VAL GLN ALA ARG PRO GLY GLN ASP ILE ARG PRO ILE SEQRES 12 A 419 GLY HIS ASP ILE LYS ARG GLY GLU CYS VAL LEU ALA LYS SEQRES 13 A 419 GLY THR HIS MET GLY PRO SER GLU ILE GLY LEU LEU ALA SEQRES 14 A 419 THR VAL GLY VAL THR GLU VAL GLU VAL ASN LYS PHE PRO SEQRES 15 A 419 VAL VAL ALA VAL MET SER THR GLY ASN GLU LEU LEU ASN SEQRES 16 A 419 PRO GLU ASP ASP LEU LEU PRO GLY LYS ILE ARG ASP SER SEQRES 17 A 419 ASN ARG SER THR LEU LEU ALA THR ILE GLN GLU HIS GLY SEQRES 18 A 419 TYR PRO THR ILE ASN LEU GLY ILE VAL GLY ASP ASN PRO SEQRES 19 A 419 ASP ASP LEU LEU ASN ALA LEU ASN GLU GLY ILE SER ARG SEQRES 20 A 419 ALA ASP VAL ILE ILE THR SER GLY GLY VAL SER MET GLY SEQRES 21 A 419 GLU LYS ASP TYR LEU LYS GLN VAL LEU ASP ILE ASP LEU SEQRES 22 A 419 HIS ALA GLN ILE HIS PHE GLY ARG VAL PHE MET LYS PRO SEQRES 23 A 419 GLY LEU PRO THR THR PHE ALA THR LEU ASP ILE ASP GLY SEQRES 24 A 419 VAL ARG LYS ILE ILE PHE ALA LEU PRO GLY ASN PRO VAL SEQRES 25 A 419 SER ALA VAL VAL THR CYS ASN LEU PHE VAL VAL PRO ALA SEQRES 26 A 419 LEU ARG LYS MET GLN GLY ILE LEU ASP PRO ARG PRO THR SEQRES 27 A 419 ILE ILE LYS ALA ARG LEU SER CYS ASP VAL LYS LEU ASP SEQRES 28 A 419 PRO ARG PRO GLU TYR HIS ARG CYS ILE LEU THR TRP HIS SEQRES 29 A 419 HIS GLN GLU PRO LEU PRO TRP ALA GLN SER THR GLY ASN SEQRES 30 A 419 GLN MET SER SER ARG LEU MET SER MET ARG SER ALA ASN SEQRES 31 A 419 GLY LEU LEU MET LEU PRO PRO LYS THR GLU GLN TYR VAL SEQRES 32 A 419 GLU LEU HIS LYS GLY GLU VAL VAL ASP VAL MET VAL ILE SEQRES 33 A 419 GLY ARG LEU HET AMP A 801 35 HET MG A 802 1 HET ACT A 803 7 HET ACT A 804 7 HET ACT A 805 7 HET PO4 A 806 5 HET MPD A 807 22 HET MPD A 808 22 HET MPD A 809 22 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM PO4 PHOSPHATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 MG MG 2+ FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 PO4 O4 P 3- FORMUL 8 MPD 3(C6 H14 O2) FORMUL 11 HOH *494(H2 O) HELIX 1 AA1 SER A 325 THR A 337 1 13 HELIX 2 AA2 ARG A 348 GLY A 350 5 3 HELIX 3 AA3 ARG A 379 GLY A 383 5 5 HELIX 4 AA4 GLY A 478 GLY A 489 1 12 HELIX 5 AA5 SER A 525 HIS A 537 1 13 HELIX 6 AA6 ASN A 550 ALA A 565 1 16 HELIX 7 AA7 TYR A 581 ASP A 589 1 9 HELIX 8 AA8 ASN A 627 GLN A 647 1 21 HELIX 9 AA9 LEU A 700 ARG A 704 5 5 SHEET 1 AA1 2 THR A 342 ASN A 346 0 SHEET 2 AA1 2 GLU A 492 ASN A 496 -1 O VAL A 493 N ILE A 345 SHEET 1 AA2 2 VAL A 359 TYR A 360 0 SHEET 2 AA2 2 CYS A 469 LEU A 471 -1 O LEU A 471 N VAL A 359 SHEET 1 AA3 2 ALA A 370 SER A 371 0 SHEET 2 AA3 2 ILE A 457 ARG A 458 -1 O ARG A 458 N ALA A 370 SHEET 1 AA4 6 ALA A 423 GLN A 426 0 SHEET 2 AA4 6 GLY A 375 VAL A 378 -1 N TYR A 376 O VAL A 425 SHEET 3 AA4 6 GLN A 407 VAL A 411 -1 O VAL A 411 N GLY A 375 SHEET 4 AA4 6 GLY A 385 GLU A 392 1 N ILE A 390 O VAL A 408 SHEET 5 AA4 6 GLU A 442 ILE A 447 -1 O ILE A 447 N GLY A 385 SHEET 6 AA4 6 THR A 430 GLU A 435 -1 N GLU A 431 O ARG A 446 SHEET 1 AA5 6 THR A 541 VAL A 547 0 SHEET 2 AA5 6 VAL A 501 THR A 506 1 N VAL A 503 O LEU A 544 SHEET 3 AA5 6 VAL A 567 SER A 571 1 O ILE A 569 N ALA A 502 SHEET 4 AA5 6 VAL A 617 LEU A 624 1 O PHE A 622 N ILE A 568 SHEET 5 AA5 6 THR A 608 ILE A 614 -1 N LEU A 612 O LYS A 619 SHEET 6 AA5 6 GLN A 593 PHE A 596 -1 N GLN A 593 O THR A 611 SHEET 1 AA6 2 LEU A 510 LEU A 511 0 SHEET 2 AA6 2 ILE A 522 ARG A 523 1 O ILE A 522 N LEU A 511 SHEET 1 AA7 6 ILE A 656 LEU A 661 0 SHEET 2 AA7 6 TRP A 688 SER A 691 1 O ALA A 689 N ARG A 660 SHEET 3 AA7 6 GLU A 672 THR A 679 -1 N THR A 679 O TRP A 688 SHEET 4 AA7 6 GLY A 708 LEU A 712 -1 O LEU A 710 N HIS A 674 SHEET 5 AA7 6 VAL A 727 VAL A 732 -1 O MET A 731 N LEU A 709 SHEET 6 AA7 6 ILE A 656 LEU A 661 -1 N ALA A 659 O VAL A 728 SHEET 1 AA8 2 VAL A 665 LYS A 666 0 SHEET 2 AA8 2 GLU A 721 LEU A 722 -1 O LEU A 722 N VAL A 665 LINK O2P AMP A 801 MG MG A 802 1555 1555 1.92 LINK MG MG A 802 O HOH A 929 1555 1555 2.01 LINK MG MG A 802 O HOH A1028 1555 1555 2.08 LINK MG MG A 802 O HOH A1044 1555 1555 2.15 LINK MG MG A 802 O HOH A1157 1555 1555 2.10 LINK MG MG A 802 O HOH A1170 1555 1555 2.10 CISPEP 1 LEU A 365 PRO A 366 0 -7.88 CISPEP 2 LYS A 602 PRO A 603 0 -7.93 SITE 1 AC1 24 SER A 505 GLU A 509 LEU A 510 ILE A 522 SITE 2 AC1 24 ASP A 524 SER A 525 ASN A 526 GLY A 572 SITE 3 AC1 24 GLY A 573 ASP A 580 GLY A 626 ASN A 627 SITE 4 AC1 24 PRO A 628 MG A 802 HOH A 902 HOH A 929 SITE 5 AC1 24 HOH A 938 HOH A1016 HOH A1044 HOH A1065 SITE 6 AC1 24 HOH A1118 HOH A1152 HOH A1157 HOH A1170 SITE 1 AC2 6 AMP A 801 HOH A 929 HOH A1028 HOH A1044 SITE 2 AC2 6 HOH A1157 HOH A1170 SITE 1 AC3 3 ALA A 356 HOH A1153 HOH A1177 SITE 1 AC4 1 LEU A 323 SITE 1 AC5 2 CYS A 469 ALA A 472 SITE 1 AC6 2 ARG A 564 LYS A 619 SITE 1 AC7 4 SER A 480 HOH A1007 HOH A1035 HOH A1377 SITE 1 AC8 4 GLU A 514 HOH A 901 HOH A1017 HOH A1226 SITE 1 AC9 3 ILE A 656 MET A 711 HOH A 944 CRYST1 87.002 99.278 112.791 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008866 0.00000