HEADER TRANSFERASE 15-NOV-15 5ERT TITLE GEPHE IN COMPLEX WITH MN(2+) - ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEPHYRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 318-736; COMPND 5 SYNONYM: PUTATIVE GLYCINE RECEPTOR-TUBULIN LINKER PROTEIN; COMPND 6 EC: 2.7.7.75,2.10.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MOCO, WCO, MOCO BIOSYNTHEIS, ADP COMPLEX, MANGANESE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.B.KASARAGOD,H.SCHINDELIN REVDAT 3 10-JAN-24 5ERT 1 LINK REVDAT 2 11-MAY-16 5ERT 1 JRNL REVDAT 1 04-MAY-16 5ERT 0 JRNL AUTH V.B.KASARAGOD,H.SCHINDELIN JRNL TITL STRUCTURAL FRAMEWORK FOR METAL INCORPORATION DURING JRNL TITL 2 MOLYBDENUM COFACTOR BIOSYNTHESIS. JRNL REF STRUCTURE V. 24 782 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27112598 JRNL DOI 10.1016/J.STR.2016.02.023 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5681 - 4.5771 1.00 2764 153 0.1598 0.1454 REMARK 3 2 4.5771 - 3.6336 1.00 2698 121 0.1283 0.1832 REMARK 3 3 3.6336 - 3.1745 1.00 2661 124 0.1491 0.1935 REMARK 3 4 3.1745 - 2.8843 1.00 2598 152 0.1724 0.2271 REMARK 3 5 2.8843 - 2.6776 1.00 2633 134 0.1814 0.1914 REMARK 3 6 2.6776 - 2.5198 1.00 2611 143 0.1974 0.2376 REMARK 3 7 2.5198 - 2.3936 1.00 2587 148 0.2015 0.2493 REMARK 3 8 2.3936 - 2.2894 1.00 2584 155 0.2031 0.2485 REMARK 3 9 2.2894 - 2.2013 1.00 2612 127 0.2269 0.2342 REMARK 3 10 2.2013 - 2.1253 1.00 2599 136 0.2323 0.2557 REMARK 3 11 2.1253 - 2.0589 1.00 2576 135 0.2446 0.2941 REMARK 3 12 2.0589 - 2.0000 1.00 2609 144 0.2603 0.2603 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3338 REMARK 3 ANGLE : 0.994 4561 REMARK 3 CHIRALITY : 0.034 532 REMARK 3 PLANARITY : 0.004 596 REMARK 3 DIHEDRAL : 15.421 1277 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.0209 130.7673 221.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.1259 REMARK 3 T33: 0.1889 T12: 0.0266 REMARK 3 T13: -0.0187 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 1.6667 L22: 2.6013 REMARK 3 L33: 6.1277 L12: -0.4826 REMARK 3 L13: -1.1349 L23: 2.6058 REMARK 3 S TENSOR REMARK 3 S11: 0.1270 S12: 0.0150 S13: -0.0685 REMARK 3 S21: -0.1091 S22: 0.0374 S23: -0.2249 REMARK 3 S31: 0.1503 S32: 0.3682 S33: -0.1477 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.1385 129.6465 267.5627 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.3067 REMARK 3 T33: 0.2235 T12: -0.1039 REMARK 3 T13: 0.0239 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 4.0074 L22: 1.4769 REMARK 3 L33: 2.4400 L12: 2.3015 REMARK 3 L13: -2.9446 L23: -1.6911 REMARK 3 S TENSOR REMARK 3 S11: 0.4917 S12: -0.5680 S13: 0.2402 REMARK 3 S21: 0.4008 S22: -0.3138 S23: 0.1407 REMARK 3 S31: -0.2917 S32: 0.3137 S33: -0.1692 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.7796 127.3455 263.4073 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.1978 REMARK 3 T33: 0.2935 T12: -0.0318 REMARK 3 T13: 0.0400 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.8501 L22: 0.7753 REMARK 3 L33: 4.9432 L12: 2.0939 REMARK 3 L13: -3.9358 L23: -1.5449 REMARK 3 S TENSOR REMARK 3 S11: 0.3669 S12: -0.4988 S13: 0.1866 REMARK 3 S21: 0.2031 S22: -0.2677 S23: 0.1999 REMARK 3 S31: -0.3740 S32: 0.2458 S33: -0.0175 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.9538 138.4998 215.1342 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.1657 REMARK 3 T33: 0.1945 T12: 0.0099 REMARK 3 T13: 0.0041 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1399 L22: 0.1218 REMARK 3 L33: 3.3707 L12: -0.0149 REMARK 3 L13: 0.1693 L23: -0.4426 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.0015 S13: 0.0319 REMARK 3 S21: -0.0179 S22: -0.0365 S23: 0.0006 REMARK 3 S31: 0.0120 S32: 0.1247 S33: 0.0199 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 551 THROUGH 686 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.7344 127.7674 208.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1626 REMARK 3 T33: 0.1698 T12: 0.0684 REMARK 3 T13: -0.0108 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.6070 L22: 1.9907 REMARK 3 L33: 1.5607 L12: 0.8616 REMARK 3 L13: -0.4117 L23: -0.5226 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.1352 S13: -0.0696 REMARK 3 S21: -0.1334 S22: 0.0454 S23: -0.0723 REMARK 3 S31: 0.2204 S32: 0.1152 S33: 0.0021 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 687 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.8548 117.9649 211.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.4479 T22: 0.3552 REMARK 3 T33: 0.4386 T12: -0.0301 REMARK 3 T13: -0.0693 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 4.1425 L22: 2.8583 REMARK 3 L33: 3.4485 L12: -2.9025 REMARK 3 L13: -2.4296 L23: 0.7400 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: 0.4746 S13: 0.0787 REMARK 3 S21: -0.8475 S22: -0.0061 S23: 0.7272 REMARK 3 S31: 0.0698 S32: -0.7473 S33: -0.1017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.5783 109.0147 210.0023 REMARK 3 T TENSOR REMARK 3 T11: 0.4727 T22: 0.1934 REMARK 3 T33: 0.3882 T12: 0.0603 REMARK 3 T13: 0.0911 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 5.5453 L22: 3.0398 REMARK 3 L33: 4.7971 L12: 2.2039 REMARK 3 L13: 2.0920 L23: -1.4880 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.0971 S13: -0.8632 REMARK 3 S21: -0.7144 S22: -0.3231 S23: -0.3608 REMARK 3 S31: 0.5661 S32: -0.0256 S33: 0.1935 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ERT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 26% MPD, PH 4.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.54500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.94750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.54500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.94750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.54500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.94750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.54500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.94750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 174.88000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 447.58000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 904 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1184 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1191 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1210 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 318 REMARK 465 GLN A 695 REMARK 465 MET A 696 REMARK 465 SER A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 911 O HOH A 1082 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 575 -159.66 -84.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 803 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 580 OD1 REMARK 620 2 ASP A 580 OD2 55.6 REMARK 620 3 ADP A 801 O1B 89.1 86.0 REMARK 620 4 ADP A 801 O1A 108.3 162.8 87.9 REMARK 620 5 HOH A 917 O 149.6 98.9 106.7 98.2 REMARK 620 6 HOH A1034 O 86.3 94.1 174.3 90.4 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 802 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 801 O2A REMARK 620 2 HOH A 930 O 170.3 REMARK 620 3 HOH A 945 O 97.8 91.3 REMARK 620 4 HOH A 964 O 92.7 90.9 87.9 REMARK 620 5 HOH A1026 O 94.5 83.5 82.5 168.6 REMARK 620 6 HOH A1157 O 89.9 81.1 172.1 89.8 99.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 809 DBREF 5ERT A 318 736 UNP Q03555 GEPH_RAT 318 736 SEQRES 1 A 419 MET SER PRO PHE PRO LEU THR SER MET ASP LYS ALA PHE SEQRES 2 A 419 ILE THR VAL LEU GLU MET THR PRO VAL LEU GLY THR GLU SEQRES 3 A 419 ILE ILE ASN TYR ARG ASP GLY MET GLY ARG VAL LEU ALA SEQRES 4 A 419 GLN ASP VAL TYR ALA LYS ASP ASN LEU PRO PRO PHE PRO SEQRES 5 A 419 ALA SER VAL LYS ASP GLY TYR ALA VAL ARG ALA ALA ASP SEQRES 6 A 419 GLY PRO GLY ASP ARG PHE ILE ILE GLY GLU SER GLN ALA SEQRES 7 A 419 GLY GLU GLN PRO THR GLN THR VAL MET PRO GLY GLN VAL SEQRES 8 A 419 MET ARG VAL THR THR GLY ALA PRO ILE PRO CYS GLY ALA SEQRES 9 A 419 ASP ALA VAL VAL GLN VAL GLU ASP THR GLU LEU ILE ARG SEQRES 10 A 419 GLU SER ASP ASP GLY THR GLU GLU LEU GLU VAL ARG ILE SEQRES 11 A 419 LEU VAL GLN ALA ARG PRO GLY GLN ASP ILE ARG PRO ILE SEQRES 12 A 419 GLY HIS ASP ILE LYS ARG GLY GLU CYS VAL LEU ALA LYS SEQRES 13 A 419 GLY THR HIS MET GLY PRO SER GLU ILE GLY LEU LEU ALA SEQRES 14 A 419 THR VAL GLY VAL THR GLU VAL GLU VAL ASN LYS PHE PRO SEQRES 15 A 419 VAL VAL ALA VAL MET SER THR GLY ASN GLU LEU LEU ASN SEQRES 16 A 419 PRO GLU ASP ASP LEU LEU PRO GLY LYS ILE ARG ASP SER SEQRES 17 A 419 ASN ARG SER THR LEU LEU ALA THR ILE GLN GLU HIS GLY SEQRES 18 A 419 TYR PRO THR ILE ASN LEU GLY ILE VAL GLY ASP ASN PRO SEQRES 19 A 419 ASP ASP LEU LEU ASN ALA LEU ASN GLU GLY ILE SER ARG SEQRES 20 A 419 ALA ASP VAL ILE ILE THR SER GLY GLY VAL SER MET GLY SEQRES 21 A 419 GLU LYS ASP TYR LEU LYS GLN VAL LEU ASP ILE ASP LEU SEQRES 22 A 419 HIS ALA GLN ILE HIS PHE GLY ARG VAL PHE MET LYS PRO SEQRES 23 A 419 GLY LEU PRO THR THR PHE ALA THR LEU ASP ILE ASP GLY SEQRES 24 A 419 VAL ARG LYS ILE ILE PHE ALA LEU PRO GLY ASN PRO VAL SEQRES 25 A 419 SER ALA VAL VAL THR CYS ASN LEU PHE VAL VAL PRO ALA SEQRES 26 A 419 LEU ARG LYS MET GLN GLY ILE LEU ASP PRO ARG PRO THR SEQRES 27 A 419 ILE ILE LYS ALA ARG LEU SER CYS ASP VAL LYS LEU ASP SEQRES 28 A 419 PRO ARG PRO GLU TYR HIS ARG CYS ILE LEU THR TRP HIS SEQRES 29 A 419 HIS GLN GLU PRO LEU PRO TRP ALA GLN SER THR GLY ASN SEQRES 30 A 419 GLN MET SER SER ARG LEU MET SER MET ARG SER ALA ASN SEQRES 31 A 419 GLY LEU LEU MET LEU PRO PRO LYS THR GLU GLN TYR VAL SEQRES 32 A 419 GLU LEU HIS LYS GLY GLU VAL VAL ASP VAL MET VAL ILE SEQRES 33 A 419 GLY ARG LEU HET ADP A 801 39 HET MN A 802 1 HET MN A 803 1 HET PO4 A 804 5 HET PO4 A 805 5 HET ACT A 806 7 HET ACT A 807 7 HET ACT A 808 7 HET MPD A 809 22 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MN 2(MN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 10 MPD C6 H14 O2 FORMUL 11 HOH *342(H2 O) HELIX 1 AA1 SER A 325 THR A 337 1 13 HELIX 2 AA2 ARG A 348 GLY A 350 5 3 HELIX 3 AA3 ARG A 379 GLY A 383 5 5 HELIX 4 AA4 GLY A 478 GLY A 489 1 12 HELIX 5 AA5 SER A 525 HIS A 537 1 13 HELIX 6 AA6 ASN A 550 ALA A 565 1 16 HELIX 7 AA7 TYR A 581 ASP A 589 1 9 HELIX 8 AA8 ASN A 627 GLN A 647 1 21 HELIX 9 AA9 LEU A 700 ARG A 704 5 5 SHEET 1 AA1 2 LEU A 323 THR A 324 0 SHEET 2 AA1 2 ARG A 598 VAL A 599 1 O ARG A 598 N THR A 324 SHEET 1 AA2 2 THR A 342 ASN A 346 0 SHEET 2 AA2 2 GLU A 492 ASN A 496 -1 O VAL A 495 N GLU A 343 SHEET 1 AA3 2 VAL A 359 TYR A 360 0 SHEET 2 AA3 2 CYS A 469 LEU A 471 -1 O LEU A 471 N VAL A 359 SHEET 1 AA4 2 ALA A 370 SER A 371 0 SHEET 2 AA4 2 ILE A 457 ARG A 458 -1 O ARG A 458 N ALA A 370 SHEET 1 AA5 6 ALA A 423 GLN A 426 0 SHEET 2 AA5 6 GLY A 375 VAL A 378 -1 N TYR A 376 O VAL A 425 SHEET 3 AA5 6 GLN A 407 VAL A 411 -1 O MET A 409 N ALA A 377 SHEET 4 AA5 6 GLY A 385 SER A 393 1 N SER A 393 O ARG A 410 SHEET 5 AA5 6 GLU A 442 ILE A 447 -1 O ILE A 447 N GLY A 385 SHEET 6 AA5 6 THR A 430 GLU A 435 -1 N GLU A 431 O ARG A 446 SHEET 1 AA6 6 THR A 541 VAL A 547 0 SHEET 2 AA6 6 VAL A 501 THR A 506 1 N VAL A 503 O LEU A 544 SHEET 3 AA6 6 VAL A 567 SER A 571 1 O ILE A 569 N ALA A 502 SHEET 4 AA6 6 VAL A 617 LEU A 624 1 O LEU A 624 N THR A 570 SHEET 5 AA6 6 THR A 608 ILE A 614 -1 N LEU A 612 O LYS A 619 SHEET 6 AA6 6 GLN A 593 PHE A 596 -1 N GLN A 593 O THR A 611 SHEET 1 AA7 2 LEU A 510 LEU A 511 0 SHEET 2 AA7 2 ILE A 522 ARG A 523 1 O ILE A 522 N LEU A 511 SHEET 1 AA8 6 ILE A 656 LEU A 661 0 SHEET 2 AA8 6 TRP A 688 SER A 691 1 O ALA A 689 N ARG A 660 SHEET 3 AA8 6 GLU A 672 THR A 679 -1 N THR A 679 O TRP A 688 SHEET 4 AA8 6 GLY A 708 LEU A 712 -1 O LEU A 710 N HIS A 674 SHEET 5 AA8 6 VAL A 727 VAL A 732 -1 O ASP A 729 N MET A 711 SHEET 6 AA8 6 ILE A 656 LEU A 661 -1 N ALA A 659 O VAL A 728 SHEET 1 AA9 2 VAL A 665 LYS A 666 0 SHEET 2 AA9 2 GLU A 721 LEU A 722 -1 O LEU A 722 N VAL A 665 LINK OD1 ASP A 580 MN MN A 803 1555 1555 2.45 LINK OD2 ASP A 580 MN MN A 803 1555 1555 2.24 LINK O2A ADP A 801 MN MN A 802 1555 1555 2.19 LINK O1B ADP A 801 MN MN A 803 1555 1555 2.09 LINK O1A ADP A 801 MN MN A 803 1555 1555 2.10 LINK MN MN A 802 O HOH A 930 1555 1555 2.28 LINK MN MN A 802 O HOH A 945 1555 1555 2.30 LINK MN MN A 802 O HOH A 964 1555 1555 2.11 LINK MN MN A 802 O HOH A1026 1555 1555 2.19 LINK MN MN A 802 O HOH A1157 1555 1555 2.29 LINK MN MN A 803 O HOH A 917 1555 3759 2.22 LINK MN MN A 803 O HOH A1034 1555 3759 2.20 CISPEP 1 SER A 319 PRO A 320 0 -11.12 CISPEP 2 LEU A 365 PRO A 366 0 -6.60 CISPEP 3 LYS A 602 PRO A 603 0 -6.78 SITE 1 AC1 21 SER A 505 GLU A 509 LEU A 510 ILE A 522 SITE 2 AC1 21 ASP A 524 SER A 525 ASN A 526 GLY A 572 SITE 3 AC1 21 GLY A 573 VAL A 574 SER A 575 ASP A 580 SITE 4 AC1 21 PRO A 625 GLY A 626 ASN A 627 MN A 802 SITE 5 AC1 21 MN A 803 HOH A 946 HOH A 994 HOH A1002 SITE 6 AC1 21 HOH A1015 SITE 1 AC2 6 ADP A 801 HOH A 930 HOH A 945 HOH A 964 SITE 2 AC2 6 HOH A1026 HOH A1157 SITE 1 AC3 2 ASP A 580 ADP A 801 SITE 1 AC4 2 LEU A 736 HOH A 903 SITE 1 AC5 2 ASP A 566 LYS A 619 SITE 1 AC6 2 LEU A 323 PHE A 600 SITE 1 AC7 2 MET A 711 HOH A 985 SITE 1 AC8 1 MET A 336 SITE 1 AC9 3 PRO A 628 ARG A 675 HOH A 947 CRYST1 87.440 99.090 111.895 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011436 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008937 0.00000