HEADER TRANSFERASE 16-NOV-15 5ERX TITLE CRYSTAL STRUCTURE OF APO MEND FROM M. TUBERCULOSIS - I222 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1- COMPND 3 CARBOXYLATE SYNTHASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SEPHCHC SYNTHASE,MENAQUINONE BIOSYNTHESIS PROTEIN MEND; COMPND 6 EC: 2.2.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE PROTEIN WAS EXPRESSED AS A HIS-TAG CONSTRUCT AND COMPND 9 CONTAINS A N-TERMINAL POLY-HISTIDINE TAG SEQUENCE NOT SEEN IN THE COMPND 10 CRYSTAL STRUCTURE. THE PROTEIN HAS BEEN NUMBERED AS IT WOULD BE IN COMPND 11 THE NON-TAGGED PROTEIN SO AS TO MATCH THE DEPOSITED BIOLOGICAL COMPND 12 SEQUENCE (E.G. START 1 = RESIDUE 1 IN SEQUENCE DATABASE). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: MEND, RV0555; SOURCE 7 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1772 KEYWDS MENAQUINONE BIOSYNTHESIS, MEND, 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3- KEYWDS 2 CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE, THIAMIN-DIPHOSPHATE DEPENDENT KEYWDS 3 ENZYME, PYRUVATE OXIDASE FAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,E.N.M.JIRGIS,G.BASHIRI,E.M.M.BULLOCH,E.N.BAKER REVDAT 6 06-MAR-24 5ERX 1 REMARK REVDAT 5 17-JAN-18 5ERX 1 REMARK REVDAT 4 22-NOV-17 5ERX 1 JRNL REMARK REVDAT 3 20-JUL-16 5ERX 1 JRNL REVDAT 2 06-JUL-16 5ERX 1 JRNL REVDAT 1 22-JUN-16 5ERX 0 JRNL AUTH E.N.JIRGIS,G.BASHIRI,E.M.BULLOCH,J.M.JOHNSTON,E.N.BAKER JRNL TITL STRUCTURAL VIEWS ALONG THE MYCOBACTERIUM TUBERCULOSIS MEND JRNL TITL 2 REACTION PATHWAY ILLUMINATE KEY ASPECTS OF THIAMIN JRNL TITL 3 DIPHOSPHATE-DEPENDENT ENZYME MECHANISMS. JRNL REF STRUCTURE V. 24 1167 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27291649 JRNL DOI 10.1016/J.STR.2016.04.018 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 62841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6625 - 4.8925 0.99 2895 146 0.1966 0.1897 REMARK 3 2 4.8925 - 3.8932 0.98 2762 151 0.1687 0.2030 REMARK 3 3 3.8932 - 3.4039 0.98 2746 130 0.1956 0.2172 REMARK 3 4 3.4039 - 3.0940 0.98 2717 136 0.2093 0.2566 REMARK 3 5 3.0940 - 2.8730 0.98 2706 151 0.2159 0.2474 REMARK 3 6 2.8730 - 2.7040 0.97 2657 143 0.2283 0.2704 REMARK 3 7 2.7040 - 2.5689 0.97 2672 145 0.2359 0.2687 REMARK 3 8 2.5689 - 2.4573 0.96 2626 157 0.2354 0.3108 REMARK 3 9 2.4573 - 2.3629 0.96 2622 146 0.2451 0.2753 REMARK 3 10 2.3629 - 2.2815 0.96 2637 147 0.2492 0.2764 REMARK 3 11 2.2815 - 2.2102 0.95 2579 153 0.2480 0.2963 REMARK 3 12 2.2102 - 2.1471 0.95 2602 127 0.2478 0.3131 REMARK 3 13 2.1471 - 2.0907 0.95 2595 152 0.2714 0.2736 REMARK 3 14 2.0907 - 2.0397 0.95 2602 125 0.2673 0.3072 REMARK 3 15 2.0397 - 1.9934 0.94 2538 151 0.2775 0.3654 REMARK 3 16 1.9934 - 1.9510 0.94 2538 161 0.2964 0.3330 REMARK 3 17 1.9510 - 1.9120 0.94 2564 117 0.3201 0.3526 REMARK 3 18 1.9120 - 1.8760 0.93 2560 121 0.3357 0.3494 REMARK 3 19 1.8760 - 1.8425 0.93 2502 143 0.3527 0.4051 REMARK 3 20 1.8425 - 1.8113 0.93 2522 146 0.3630 0.3805 REMARK 3 21 1.8113 - 1.7821 0.92 2501 124 0.4035 0.4667 REMARK 3 22 1.7821 - 1.7547 0.92 2500 127 0.4409 0.4287 REMARK 3 23 1.7547 - 1.7289 0.73 1991 108 0.5201 0.4888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3813 REMARK 3 ANGLE : 0.671 5232 REMARK 3 CHIRALITY : 0.047 626 REMARK 3 PLANARITY : 0.005 697 REMARK 3 DIHEDRAL : 13.776 2313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ERX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.729 REMARK 200 RESOLUTION RANGE LOW (A) : 19.661 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GREW IN THE FRIDGE IN THE REMARK 280 PURIFICATION BUFFER., BATCH MODE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.02950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.75100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.09500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.02950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.75100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.02950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.75100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.02950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.75100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.50200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 120.19000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 105.50200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 120.19000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 666 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 785 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 107 REMARK 465 PRO A 108 REMARK 465 TYR A 109 REMARK 465 GLU A 110 REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 465 GLY A 113 REMARK 465 THR A 114 REMARK 465 GLY A 115 REMARK 465 ALA A 116 REMARK 465 ASN A 117 REMARK 465 GLN A 118 REMARK 465 THR A 119 REMARK 465 MET A 120 REMARK 465 GLU A 121 REMARK 465 GLN A 122 REMARK 465 LEU A 123 REMARK 465 GLY A 124 REMARK 465 ARG A 182 REMARK 465 GLU A 183 REMARK 465 PRO A 184 REMARK 465 LEU A 185 REMARK 465 VAL A 186 REMARK 465 PRO A 187 REMARK 465 ASP A 188 REMARK 465 PRO A 189 REMARK 465 GLU A 190 REMARK 465 PRO A 191 REMARK 465 LEU A 192 REMARK 465 GLY A 193 REMARK 465 ALA A 194 REMARK 465 VAL A 195 REMARK 465 ILE A 474 REMARK 465 PHE A 475 REMARK 465 GLU A 476 REMARK 465 LEU A 477 REMARK 465 LEU A 478 REMARK 465 GLU A 479 REMARK 465 GLN A 480 REMARK 465 GLY A 481 REMARK 465 ASP A 482 REMARK 465 PRO A 483 REMARK 465 ARG A 484 REMARK 465 PHE A 485 REMARK 465 SER A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ASP A 487 CG OD1 OD2 REMARK 470 ARG A 544 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 787 O HOH A 855 2.14 REMARK 500 O HOH A 786 O HOH A 854 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 78 17.16 -144.26 REMARK 500 ALA A 142 78.07 -159.05 REMARK 500 ASP A 306 -69.27 -98.60 REMARK 500 SER A 377 -108.62 -92.56 REMARK 500 SER A 461 49.20 -144.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 305 ASP A 306 -144.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ERY RELATED DB: PDB REMARK 900 RELATED ID: 5ESS RELATED DB: PDB REMARK 900 RELATED ID: 5ESD RELATED DB: PDB REMARK 900 RELATED ID: 5ESO RELATED DB: PDB REMARK 900 RELATED ID: 5ESU RELATED DB: PDB DBREF 5ERX A 1 554 UNP P9WK11 MEND_MYCTU 1 554 SEQADV 5ERX MET A -19 UNP P9WK11 INITIATING METHIONINE SEQADV 5ERX GLY A -18 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX SER A -17 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX SER A -16 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A -15 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A -14 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A -13 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A -12 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A -11 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A -10 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX SER A -9 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX SER A -8 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX GLY A -7 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX LEU A -6 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX VAL A -5 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX PRO A -4 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX ARG A -3 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX GLY A -2 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX SER A -1 UNP P9WK11 EXPRESSION TAG SEQADV 5ERX HIS A 0 UNP P9WK11 EXPRESSION TAG SEQRES 1 A 574 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 574 LEU VAL PRO ARG GLY SER HIS MET ASN PRO SER THR THR SEQRES 3 A 574 GLN ALA ARG VAL VAL VAL ASP GLU LEU ILE ARG GLY GLY SEQRES 4 A 574 VAL ARG ASP VAL VAL LEU CYS PRO GLY SER ARG ASN ALA SEQRES 5 A 574 PRO LEU ALA PHE ALA LEU GLN ASP ALA ASP ARG SER GLY SEQRES 6 A 574 ARG ILE ARG LEU HIS VAL ARG ILE ASP GLU ARG THR ALA SEQRES 7 A 574 GLY TYR LEU ALA ILE GLY LEU ALA ILE GLY ALA GLY ALA SEQRES 8 A 574 PRO VAL CYS VAL ALA MET THR SER GLY THR ALA VAL ALA SEQRES 9 A 574 ASN LEU GLY PRO ALA VAL VAL GLU ALA ASN TYR ALA ARG SEQRES 10 A 574 VAL PRO LEU ILE VAL LEU SER ALA ASN ARG PRO TYR GLU SEQRES 11 A 574 LEU LEU GLY THR GLY ALA ASN GLN THR MET GLU GLN LEU SEQRES 12 A 574 GLY TYR PHE GLY THR GLN VAL ARG ALA SER ILE SER LEU SEQRES 13 A 574 GLY LEU ALA GLU ASP ALA PRO GLU ARG THR SER ALA LEU SEQRES 14 A 574 ASN ALA THR TRP ARG SER ALA THR CYS ARG VAL LEU ALA SEQRES 15 A 574 ALA ALA THR GLY ALA ARG THR ALA ASN ALA GLY PRO VAL SEQRES 16 A 574 HIS PHE ASP ILE PRO LEU ARG GLU PRO LEU VAL PRO ASP SEQRES 17 A 574 PRO GLU PRO LEU GLY ALA VAL THR PRO PRO GLY ARG PRO SEQRES 18 A 574 ALA GLY LYS PRO TRP THR TYR THR PRO PRO VAL THR PHE SEQRES 19 A 574 ASP GLN PRO LEU ASP ILE ASP LEU SER VAL ASP THR VAL SEQRES 20 A 574 VAL ILE SER GLY HIS GLY ALA GLY VAL HIS PRO ASN LEU SEQRES 21 A 574 ALA ALA LEU PRO THR VAL ALA GLU PRO THR ALA PRO ARG SEQRES 22 A 574 SER GLY ASP ASN PRO LEU HIS PRO LEU ALA LEU PRO LEU SEQRES 23 A 574 LEU ARG PRO GLN GLN VAL ILE MET LEU GLY ARG PRO THR SEQRES 24 A 574 LEU HIS ARG PRO VAL SER VAL LEU LEU ALA ASP ALA GLU SEQRES 25 A 574 VAL PRO VAL PHE ALA LEU THR THR GLY PRO ARG TRP PRO SEQRES 26 A 574 ASP VAL SER GLY ASN SER GLN ALA THR GLY THR ARG ALA SEQRES 27 A 574 VAL THR THR GLY ALA PRO ARG PRO ALA TRP LEU ASP ARG SEQRES 28 A 574 CYS ALA ALA MET ASN ARG HIS ALA ILE ALA ALA VAL ARG SEQRES 29 A 574 GLU GLN LEU ALA ALA HIS PRO LEU THR THR GLY LEU HIS SEQRES 30 A 574 VAL ALA ALA ALA VAL SER HIS ALA LEU ARG PRO GLY ASP SEQRES 31 A 574 GLN LEU VAL LEU GLY ALA SER ASN PRO VAL ARG ASP VAL SEQRES 32 A 574 ALA LEU ALA GLY LEU ASP THR ARG GLY ILE ARG VAL ARG SEQRES 33 A 574 SER ASN ARG GLY VAL ALA GLY ILE ASP GLY THR VAL SER SEQRES 34 A 574 THR ALA ILE GLY ALA ALA LEU ALA TYR GLU GLY ALA HIS SEQRES 35 A 574 GLU ARG THR GLY SER PRO ASP SER PRO PRO ARG THR ILE SEQRES 36 A 574 ALA LEU ILE GLY ASP LEU THR PHE VAL HIS ASP SER SER SEQRES 37 A 574 GLY LEU LEU ILE GLY PRO THR GLU PRO ILE PRO ARG SER SEQRES 38 A 574 LEU THR ILE VAL VAL SER ASN ASP ASN GLY GLY GLY ILE SEQRES 39 A 574 PHE GLU LEU LEU GLU GLN GLY ASP PRO ARG PHE SER ASP SEQRES 40 A 574 VAL SER SER ARG ILE PHE GLY THR PRO HIS ASP VAL ASP SEQRES 41 A 574 VAL GLY ALA LEU CYS ARG ALA TYR HIS VAL GLU SER ARG SEQRES 42 A 574 GLN ILE GLU VAL ASP GLU LEU GLY PRO THR LEU ASP GLN SEQRES 43 A 574 PRO GLY ALA GLY MET ARG VAL LEU GLU VAL LYS ALA ASP SEQRES 44 A 574 ARG SER SER LEU ARG GLN LEU HIS ALA ALA ILE LYS ALA SEQRES 45 A 574 ALA LEU FORMUL 2 HOH *282(H2 O) HELIX 1 AA1 ASN A 2 GLY A 18 1 17 HELIX 2 AA2 LEU A 34 SER A 44 1 11 HELIX 3 AA3 ASP A 54 GLY A 68 1 15 HELIX 4 AA4 THR A 81 ARG A 97 1 17 HELIX 5 AA5 PHE A 126 VAL A 130 5 5 HELIX 6 AA6 ALA A 142 GLU A 144 5 3 HELIX 7 AA7 ARG A 145 GLY A 166 1 22 HELIX 8 AA8 ARG A 200 LYS A 204 5 5 HELIX 9 AA9 HIS A 237 ALA A 241 5 5 HELIX 10 AB1 HIS A 260 LEU A 267 5 8 HELIX 11 AB2 HIS A 281 ALA A 289 1 9 HELIX 12 AB3 ARG A 325 HIS A 350 1 26 HELIX 13 AB4 THR A 354 LEU A 366 1 13 HELIX 14 AB5 SER A 377 GLY A 387 1 11 HELIX 15 AB6 GLY A 406 GLY A 426 1 21 HELIX 16 AB7 ASP A 440 ASP A 446 1 7 HELIX 17 AB8 SER A 447 LEU A 451 5 5 HELIX 18 AB9 ASP A 487 PHE A 493 5 7 HELIX 19 AC1 ASP A 500 TYR A 508 1 9 HELIX 20 AC2 GLU A 516 ASP A 518 5 3 HELIX 21 AC3 GLU A 519 GLN A 526 1 8 HELIX 22 AC4 SER A 542 LEU A 554 1 13 SHEET 1 AA1 6 ARG A 48 VAL A 51 0 SHEET 2 AA1 6 ASP A 22 LEU A 25 1 N LEU A 25 O HIS A 50 SHEET 3 AA1 6 VAL A 73 ALA A 76 1 O CYS A 74 N VAL A 24 SHEET 4 AA1 6 LEU A 100 SER A 104 1 O LEU A 103 N VAL A 75 SHEET 5 AA1 6 VAL A 175 ASP A 178 1 O PHE A 177 N VAL A 102 SHEET 6 AA1 6 ALA A 132 SER A 135 1 N ILE A 134 O HIS A 176 SHEET 1 AA2 2 PRO A 217 ASP A 221 0 SHEET 2 AA2 2 ARG A 317 THR A 321 1 O VAL A 319 N LEU A 218 SHEET 1 AA3 5 THR A 245 ALA A 247 0 SHEET 2 AA3 5 THR A 226 SER A 230 1 N VAL A 228 O VAL A 246 SHEET 3 AA3 5 GLN A 271 LEU A 275 1 O LEU A 275 N ILE A 229 SHEET 4 AA3 5 VAL A 295 LEU A 298 1 O LEU A 298 N MET A 274 SHEET 5 AA3 5 SER A 311 GLY A 315 1 O GLN A 312 N VAL A 295 SHEET 1 AA4 6 ARG A 394 ARG A 396 0 SHEET 2 AA4 6 GLN A 371 LEU A 374 1 N LEU A 372 O ARG A 396 SHEET 3 AA4 6 THR A 434 GLY A 439 1 O ILE A 435 N GLN A 371 SHEET 4 AA4 6 LEU A 462 ASN A 468 1 O VAL A 465 N ALA A 436 SHEET 5 AA4 6 MET A 531 LYS A 537 1 O LEU A 534 N ILE A 464 SHEET 6 AA4 6 GLU A 511 GLN A 514 1 N GLU A 511 O VAL A 533 CRYST1 100.059 105.502 120.190 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008320 0.00000