data_5ERZ # _entry.id 5ERZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5ERZ WWPDB D_1000215365 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2017-07-26 _pdbx_database_PDB_obs_spr.pdb_id 5XEW _pdbx_database_PDB_obs_spr.replace_pdb_id 5ERZ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5ES0 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ERZ _pdbx_database_status.recvd_initial_deposition_date 2015-11-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tseng, W.H.' 1 'Wu, P.C.' 2 'Hou, M.H.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of the [Ni2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tseng, W.H.' 1 primary 'Wu, P.C.' 2 primary 'Hou, M.H.' 3 # _cell.entry_id 5ERZ _cell.length_a 48.291 _cell.length_b 48.291 _cell.length_c 83.356 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ERZ _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*AP*A)-3') ; 3912.550 2 ? ? ? ? 2 non-polymer man 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE 162.184 2 ? ? ? ? 3 non-polymer man '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 174.194 2 ? ? ? ? 4 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? 5 non-polymer man 2,3-DIDEOXYFUCOSE 132.158 4 ? ? ? ? 6 non-polymer man 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE 204.220 2 ? ? ? ? 7 non-polymer nat 'NICKEL (II) ION' 58.693 3 ? ? ? ? 8 water nat water 18.015 202 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTCCGCCGCCGAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DG n 1 12 DA n 1 13 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5ERZ _struct_ref.pdbx_db_accession 5ERZ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ERZ A 1 ? 13 ? 5ERZ 1 ? 13 ? 1 13 2 1 5ERZ B 1 ? 13 ? 5ERZ 14 ? 26 ? 14 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL D-saccharide . 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE ? 'C7 H14 O4' 162.184 ARI D-saccharide . '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' ? 'C8 H14 O4' 174.194 CDR saccharide . 2,3-DIDEOXYFUCOSE ? 'C6 H12 O3' 132.158 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI saccharide . 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE ? 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ERZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.0 mM single stranded-DNA, 2.0 mM Chromomycin A3, 4mM NiSO4 6H2O, 50 mM sodium-cacodylate buffer, 5 mM MgCl2, 1 mM spermine, 3 % MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-01-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.45104 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.45104 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5ERZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.750 _reflns.number_obs 11436 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.10 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs 0.36400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.10 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5ERZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10858 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.80 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.236 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 546 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 46.54 _refine.aniso_B[1][1] 0.54000 _refine.aniso_B[2][2] 0.54000 _refine.aniso_B[3][3] -1.76000 _refine.aniso_B[1][2] 0.54000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.121 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.overall_SU_ML 0.088 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.760 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 518 _refine_hist.pdbx_number_atoms_ligand 169 _refine_hist.number_atoms_solvent 202 _refine_hist.number_atoms_total 889 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 27.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.014 ? 748 'X-RAY DIFFRACTION' ? r_bond_other_d 0.021 0.020 ? 429 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.486 1.755 ? 1128 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.481 3.000 ? 993 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.115 0.200 ? 120 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.024 0.020 ? 370 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 146 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.75 _refine_ls_shell.d_res_low 1.80 _refine_ls_shell.number_reflns_R_work 761 _refine_ls_shell.R_factor_R_work 0.3200 _refine_ls_shell.percent_reflns_obs 95.33 _refine_ls_shell.R_factor_R_free 0.3120 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5ERZ _struct.title 'Crystal structure of the [Ni2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex' _struct.pdbx_descriptor 'DNA-Chro complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5ERZ _struct_keywords.text ;nucleotide flipping-out, CCG trinucleotide repeats, Chromomycin A3, Metalloantibiotics, minor groove binding drug, DNA-ANTIBIOTIC complex ; _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 7 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 5 ? O N N 5 ? P N N 6 ? Q N N 7 ? R N N 8 ? S N N 8 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A DG 8 N7 ? ? ? 1_555 J NI . NI ? ? A DG 8 A NI 108 1_555 ? ? ? ? ? ? ? 2.104 ? metalc2 metalc ? ? B DG 8 N7 ? ? ? 1_555 Q NI . NI ? ? B DG 21 B NI 107 1_555 ? ? ? ? ? ? ? 2.106 ? covale1 covale none ? D ARI . OGL ? ? ? 1_555 E CPH . C6 ? ? A ARI 102 A CPH 103 1_555 ? ? ? ? ? ? ? 1.491 ? metalc3 metalc ? ? E CPH . O1 ? ? ? 1_555 I NI . NI ? ? A CPH 103 A NI 107 1_555 ? ? ? ? ? ? ? 2.021 ? metalc4 metalc ? ? E CPH . O9 ? ? ? 1_555 I NI . NI ? ? A CPH 103 A NI 107 1_555 ? ? ? ? ? ? ? 1.976 ? metalc5 metalc ? ? I NI . NI ? ? ? 1_555 M CPH . O1 ? ? A NI 107 B CPH 103 1_555 ? ? ? ? ? ? ? 2.038 ? metalc6 metalc ? ? I NI . NI ? ? ? 1_555 M CPH . O9 ? ? A NI 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.958 ? metalc7 metalc ? ? I NI . NI ? ? ? 1_555 R HOH . O ? ? A NI 107 A HOH 203 1_555 ? ? ? ? ? ? ? 2.152 ? metalc8 metalc ? ? I NI . NI ? ? ? 1_555 S HOH . O ? ? A NI 107 B HOH 207 1_555 ? ? ? ? ? ? ? 2.153 ? metalc9 metalc ? ? J NI . NI ? ? ? 1_555 R HOH . O ? ? A NI 108 A HOH 205 1_555 ? ? ? ? ? ? ? 2.025 ? metalc10 metalc ? ? J NI . NI ? ? ? 1_555 R HOH . O ? ? A NI 108 A HOH 208 1_555 ? ? ? ? ? ? ? 2.096 ? metalc11 metalc ? ? J NI . NI ? ? ? 1_555 R HOH . O ? ? A NI 108 A HOH 219 1_555 ? ? ? ? ? ? ? 1.988 ? metalc12 metalc ? ? J NI . NI ? ? ? 1_555 R HOH . O ? ? A NI 108 A HOH 236 1_555 ? ? ? ? ? ? ? 1.845 ? metalc13 metalc ? ? J NI . NI ? ? ? 1_555 R HOH . O ? ? A NI 108 A HOH 249 1_555 ? ? ? ? ? ? ? 2.423 ? covale2 covale none ? L ARI . OGL ? ? ? 1_555 M CPH . C6 ? ? B ARI 102 B CPH 103 1_555 ? ? ? ? ? ? ? 1.492 ? covale3 covale none ? O CDR . C3 ? ? ? 1_555 P ERI . O1 ? ? B CDR 105 B ERI 106 1_555 ? ? ? ? ? ? ? 1.514 ? covale4 covale none ? K 1GL . O1 ? ? ? 1_555 L ARI . C3 ? ? B 1GL 101 B ARI 102 1_555 ? ? ? ? ? ? ? 1.552 ? covale5 covale none ? C 1GL . O1 ? ? ? 1_555 D ARI . C3 ? ? A 1GL 101 A ARI 102 1_555 ? ? ? ? ? ? ? 1.565 ? covale6 covale none ? E CPH . C2 ? ? ? 1_555 F CDR . OGL ? ? A CPH 103 A CDR 104 1_555 ? ? ? ? ? ? ? 1.569 ? covale7 covale none ? G CDR . C3 ? ? ? 1_555 H ERI . O1 ? ? A CDR 105 A ERI 106 1_555 ? ? ? ? ? ? ? 1.576 ? covale8 covale none ? F CDR . C3 ? ? ? 1_555 G CDR . OGL ? ? A CDR 104 A CDR 105 1_555 ? ? ? ? ? ? ? 1.606 ? covale9 covale none ? M CPH . C2 ? ? ? 1_555 N CDR . OGL ? ? B CPH 103 B CDR 104 1_555 ? ? ? ? ? ? ? 1.607 ? covale10 covale none ? N CDR . C3 ? ? ? 1_555 O CDR . OGL ? ? B CDR 104 B CDR 105 1_555 ? ? ? ? ? ? ? 1.638 ? metalc14 metalc ? ? Q NI . NI ? ? ? 1_555 S HOH . O ? ? B NI 107 B HOH 208 1_555 ? ? ? ? ? ? ? 2.129 ? metalc15 metalc ? ? Q NI . NI ? ? ? 1_555 S HOH . O ? ? B NI 107 B HOH 206 1_555 ? ? ? ? ? ? ? 2.119 ? metalc16 metalc ? ? Q NI . NI ? ? ? 1_555 S HOH . O ? ? B NI 107 B HOH 222 1_555 ? ? ? ? ? ? ? 2.172 ? metalc17 metalc ? ? Q NI . NI ? ? ? 1_555 S HOH . O ? ? B NI 107 B HOH 228 1_555 ? ? ? ? ? ? ? 1.804 ? metalc18 metalc ? ? Q NI . NI ? ? ? 1_555 R HOH . O ? ? B NI 107 A HOH 254 6_565 ? ? ? ? ? ? ? 2.334 ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N7 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog26 hydrog ? ? A DA 13 N7 ? ? ? 1_555 B DT 1 N3 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 107 ? 4 'binding site for residue NI A 107' AC2 Software A NI 108 ? 6 'binding site for residue NI A 108' AC3 Software B NI 107 ? 6 'binding site for residue NI B 107' AC4 Software A 1GL 101 ? 28 'binding site for Poly-Saccharide residues 1GL A 101 through ERI A 106' AC5 Software B 1GL 101 ? 39 'binding site for Poly-Saccharide residues 1GL B 101 through ERI B 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CPH E . ? CPH A 103 . ? 1_555 ? 2 AC1 4 HOH R . ? HOH A 203 . ? 1_555 ? 3 AC1 4 CPH M . ? CPH B 103 . ? 1_555 ? 4 AC1 4 HOH S . ? HOH B 207 . ? 1_555 ? 5 AC2 6 DG A 8 ? DG A 8 . ? 1_555 ? 6 AC2 6 HOH R . ? HOH A 205 . ? 1_555 ? 7 AC2 6 HOH R . ? HOH A 208 . ? 1_555 ? 8 AC2 6 HOH R . ? HOH A 219 . ? 1_555 ? 9 AC2 6 HOH R . ? HOH A 236 . ? 1_555 ? 10 AC2 6 HOH R . ? HOH A 249 . ? 1_555 ? 11 AC3 6 HOH R . ? HOH A 254 . ? 6_565 ? 12 AC3 6 DG B 8 ? DG B 21 . ? 1_555 ? 13 AC3 6 HOH S . ? HOH B 206 . ? 1_555 ? 14 AC3 6 HOH S . ? HOH B 208 . ? 1_555 ? 15 AC3 6 HOH S . ? HOH B 222 . ? 1_555 ? 16 AC3 6 HOH S . ? HOH B 228 . ? 1_555 ? 17 AC4 28 DG A 5 ? DG A 5 . ? 1_555 ? 18 AC4 28 DC A 6 ? DC A 6 . ? 1_555 ? 19 AC4 28 DC A 7 ? DC A 7 . ? 1_555 ? 20 AC4 28 DG A 8 ? DG A 8 . ? 1_555 ? 21 AC4 28 DC A 9 ? DC A 9 . ? 1_555 ? 22 AC4 28 DC A 10 ? DC A 10 . ? 1_555 ? 23 AC4 28 DG A 11 ? DG A 11 . ? 1_555 ? 24 AC4 28 DA A 12 ? DA A 12 . ? 1_555 ? 25 AC4 28 NI I . ? NI A 107 . ? 1_555 ? 26 AC4 28 HOH R . ? HOH A 203 . ? 1_555 ? 27 AC4 28 HOH R . ? HOH A 206 . ? 1_555 ? 28 AC4 28 HOH R . ? HOH A 207 . ? 1_555 ? 29 AC4 28 HOH R . ? HOH A 213 . ? 1_555 ? 30 AC4 28 HOH R . ? HOH A 220 . ? 1_555 ? 31 AC4 28 HOH R . ? HOH A 223 . ? 6_555 ? 32 AC4 28 HOH R . ? HOH A 223 . ? 1_555 ? 33 AC4 28 HOH R . ? HOH A 225 . ? 1_555 ? 34 AC4 28 HOH R . ? HOH A 229 . ? 1_555 ? 35 AC4 28 HOH R . ? HOH A 232 . ? 1_555 ? 36 AC4 28 HOH R . ? HOH A 239 . ? 1_555 ? 37 AC4 28 DG B 5 ? DG B 18 . ? 1_555 ? 38 AC4 28 DC B 6 ? DC B 19 . ? 1_555 ? 39 AC4 28 DC B 10 ? DC B 23 . ? 1_555 ? 40 AC4 28 ARI L . ? ARI B 102 . ? 1_555 ? 41 AC4 28 CPH M . ? CPH B 103 . ? 1_555 ? 42 AC4 28 CDR O . ? CDR B 105 . ? 1_555 ? 43 AC4 28 ERI P . ? ERI B 106 . ? 1_555 ? 44 AC4 28 HOH S . ? HOH B 207 . ? 1_555 ? 45 AC5 39 DG A 5 ? DG A 5 . ? 1_555 ? 46 AC5 39 DC A 6 ? DC A 6 . ? 1_555 ? 47 AC5 39 DC A 7 ? DC A 7 . ? 1_555 ? 48 AC5 39 DG A 8 ? DG A 8 . ? 1_555 ? 49 AC5 39 DC A 9 ? DC A 9 . ? 1_555 ? 50 AC5 39 DC A 10 ? DC A 10 . ? 1_555 ? 51 AC5 39 DG A 11 ? DG A 11 . ? 1_555 ? 52 AC5 39 DA A 12 ? DA A 12 . ? 1_555 ? 53 AC5 39 NI I . ? NI A 107 . ? 1_555 ? 54 AC5 39 HOH R . ? HOH A 203 . ? 1_555 ? 55 AC5 39 HOH R . ? HOH A 204 . ? 1_555 ? 56 AC5 39 HOH R . ? HOH A 206 . ? 1_555 ? 57 AC5 39 HOH R . ? HOH A 207 . ? 1_555 ? 58 AC5 39 HOH R . ? HOH A 212 . ? 1_555 ? 59 AC5 39 HOH R . ? HOH A 213 . ? 1_555 ? 60 AC5 39 HOH R . ? HOH A 218 . ? 1_555 ? 61 AC5 39 HOH R . ? HOH A 220 . ? 1_555 ? 62 AC5 39 HOH R . ? HOH A 223 . ? 6_555 ? 63 AC5 39 HOH R . ? HOH A 223 . ? 1_555 ? 64 AC5 39 HOH R . ? HOH A 225 . ? 1_555 ? 65 AC5 39 HOH R . ? HOH A 229 . ? 1_555 ? 66 AC5 39 HOH R . ? HOH A 232 . ? 1_555 ? 67 AC5 39 HOH R . ? HOH A 235 . ? 1_555 ? 68 AC5 39 HOH R . ? HOH A 238 . ? 1_555 ? 69 AC5 39 HOH R . ? HOH A 239 . ? 1_555 ? 70 AC5 39 DG B 5 ? DG B 18 . ? 1_555 ? 71 AC5 39 DC B 6 ? DC B 19 . ? 1_555 ? 72 AC5 39 DG B 8 ? DG B 21 . ? 1_555 ? 73 AC5 39 DC B 9 ? DC B 22 . ? 1_555 ? 74 AC5 39 DC B 10 ? DC B 23 . ? 1_555 ? 75 AC5 39 DG B 11 ? DG B 24 . ? 1_555 ? 76 AC5 39 DA B 12 ? DA B 25 . ? 1_555 ? 77 AC5 39 HOH S . ? HOH B 202 . ? 1_555 ? 78 AC5 39 HOH S . ? HOH B 207 . ? 1_555 ? 79 AC5 39 HOH S . ? HOH B 210 . ? 1_555 ? 80 AC5 39 HOH S . ? HOH B 211 . ? 1_555 ? 81 AC5 39 HOH S . ? HOH B 211 . ? 5_454 ? 82 AC5 39 HOH S . ? HOH B 221 . ? 1_555 ? 83 AC5 39 HOH S . ? HOH B 224 . ? 1_555 ? # _database_PDB_matrix.entry_id 5ERZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 5ERZ _atom_sites.fract_transf_matrix[1][1] 0.020708 _atom_sites.fract_transf_matrix[1][2] 0.011956 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023911 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011997 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DA 13 13 13 DA DA A . n B 1 1 DT 1 14 14 DT DT B . n B 1 2 DT 2 15 15 DT DT B . n B 1 3 DC 3 16 16 DC DC B . n B 1 4 DC 4 17 17 DC DC B . n B 1 5 DG 5 18 18 DG DG B . n B 1 6 DC 6 19 19 DC DC B . n B 1 7 DC 7 20 20 DC DC B . n B 1 8 DG 8 21 21 DG DG B . n B 1 9 DC 9 22 22 DC DC B . n B 1 10 DC 10 23 23 DC DC B . n B 1 11 DG 11 24 24 DG DG B . n B 1 12 DA 12 25 25 DA DA B . n B 1 13 DA 13 26 26 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1GL 1 101 101 1GL 1GL A . D 3 ARI 2 102 102 ARI ARI A . E 4 CPH 1 103 103 CPH CPH A . F 5 CDR 1 104 104 CDR CDR A . G 5 CDR 2 105 105 CDR CDR A . H 6 ERI 3 106 106 ERI ERI A . I 7 NI 1 107 107 NI NI A . J 7 NI 1 108 108 NI NI A . K 2 1GL 1 101 101 1GL 1GL B . L 3 ARI 2 102 102 ARI ARI B . M 4 CPH 1 103 103 CPH CPH B . N 5 CDR 1 104 104 CDR CDR B . O 5 CDR 2 105 105 CDR CDR B . P 6 ERI 3 106 106 ERI ERI B . Q 7 NI 1 107 107 NI NI B . R 8 HOH 1 201 201 HOH HOH A . R 8 HOH 2 202 202 HOH HOH A . R 8 HOH 3 203 203 HOH HOH A . R 8 HOH 4 204 204 HOH HOH A . R 8 HOH 5 205 205 HOH HOH A . R 8 HOH 6 206 206 HOH HOH A . R 8 HOH 7 207 207 HOH HOH A . R 8 HOH 8 208 208 HOH HOH A . R 8 HOH 9 209 209 HOH HOH A . R 8 HOH 10 210 210 HOH HOH A . R 8 HOH 11 211 211 HOH HOH A . R 8 HOH 12 212 212 HOH HOH A . R 8 HOH 13 213 213 HOH HOH A . R 8 HOH 14 214 214 HOH HOH A . R 8 HOH 15 215 215 HOH HOH A . R 8 HOH 16 216 216 HOH HOH A . R 8 HOH 17 217 217 HOH HOH A . R 8 HOH 18 218 218 HOH HOH A . R 8 HOH 19 219 219 HOH HOH A . R 8 HOH 20 220 220 HOH HOH A . R 8 HOH 21 221 221 HOH HOH A . R 8 HOH 22 222 222 HOH HOH A . R 8 HOH 23 223 223 HOH HOH A . R 8 HOH 24 224 224 HOH HOH A . R 8 HOH 25 225 225 HOH HOH A . R 8 HOH 26 226 226 HOH HOH A . R 8 HOH 27 227 227 HOH HOH A . R 8 HOH 28 228 228 HOH HOH A . R 8 HOH 29 229 229 HOH HOH A . R 8 HOH 30 230 230 HOH HOH A . R 8 HOH 31 231 231 HOH HOH A . R 8 HOH 32 232 232 HOH HOH A . R 8 HOH 33 233 233 HOH HOH A . R 8 HOH 34 234 234 HOH HOH A . R 8 HOH 35 235 235 HOH HOH A . R 8 HOH 36 236 236 HOH HOH A . R 8 HOH 37 237 237 HOH HOH A . R 8 HOH 38 238 238 HOH HOH A . R 8 HOH 39 239 239 HOH HOH A . R 8 HOH 40 240 240 HOH HOH A . R 8 HOH 41 241 241 HOH HOH A . R 8 HOH 42 242 242 HOH HOH A . R 8 HOH 43 243 243 HOH HOH A . R 8 HOH 44 244 244 HOH HOH A . R 8 HOH 45 245 245 HOH HOH A . R 8 HOH 46 246 246 HOH HOH A . R 8 HOH 47 247 247 HOH HOH A . R 8 HOH 48 248 248 HOH HOH A . R 8 HOH 49 249 249 HOH HOH A . R 8 HOH 50 250 250 HOH HOH A . R 8 HOH 51 251 251 HOH HOH A . R 8 HOH 52 252 252 HOH HOH A . R 8 HOH 53 253 253 HOH HOH A . R 8 HOH 54 254 254 HOH HOH A . R 8 HOH 55 255 255 HOH HOH A . R 8 HOH 56 256 256 HOH HOH A . R 8 HOH 57 257 257 HOH HOH A . R 8 HOH 58 258 258 HOH HOH A . R 8 HOH 59 259 259 HOH HOH A . R 8 HOH 60 260 260 HOH HOH A . R 8 HOH 61 261 261 HOH HOH A . R 8 HOH 62 262 262 HOH HOH A . R 8 HOH 63 263 263 HOH HOH A . R 8 HOH 64 264 264 HOH HOH A . R 8 HOH 65 265 265 HOH HOH A . R 8 HOH 66 266 266 HOH HOH A . R 8 HOH 67 267 267 HOH HOH A . R 8 HOH 68 268 268 HOH HOH A . R 8 HOH 69 269 269 HOH HOH A . R 8 HOH 70 270 270 HOH HOH A . R 8 HOH 71 271 271 HOH HOH A . R 8 HOH 72 272 272 HOH HOH A . R 8 HOH 73 273 273 HOH HOH A . R 8 HOH 74 274 274 HOH HOH A . R 8 HOH 75 275 275 HOH HOH A . R 8 HOH 76 276 276 HOH HOH A . R 8 HOH 77 277 277 HOH HOH A . R 8 HOH 78 278 278 HOH HOH A . R 8 HOH 79 279 279 HOH HOH A . R 8 HOH 80 280 280 HOH HOH A . R 8 HOH 81 281 281 HOH HOH A . R 8 HOH 82 282 282 HOH HOH A . R 8 HOH 83 283 283 HOH HOH A . R 8 HOH 84 284 284 HOH HOH A . R 8 HOH 85 285 285 HOH HOH A . R 8 HOH 86 286 286 HOH HOH A . R 8 HOH 87 287 287 HOH HOH A . R 8 HOH 88 288 288 HOH HOH A . R 8 HOH 89 289 289 HOH HOH A . R 8 HOH 90 290 290 HOH HOH A . R 8 HOH 91 291 291 HOH HOH A . R 8 HOH 92 292 292 HOH HOH A . R 8 HOH 93 293 293 HOH HOH A . R 8 HOH 94 294 294 HOH HOH A . R 8 HOH 95 295 295 HOH HOH A . R 8 HOH 96 296 296 HOH HOH A . R 8 HOH 97 297 297 HOH HOH A . R 8 HOH 98 298 298 HOH HOH A . R 8 HOH 99 299 299 HOH HOH A . R 8 HOH 100 300 300 HOH HOH A . R 8 HOH 101 301 301 HOH HOH A . R 8 HOH 102 302 302 HOH HOH A . R 8 HOH 103 303 303 HOH HOH A . R 8 HOH 104 304 304 HOH HOH A . R 8 HOH 105 305 305 HOH HOH A . R 8 HOH 106 306 306 HOH HOH A . R 8 HOH 107 307 307 HOH HOH A . R 8 HOH 108 308 308 HOH HOH A . R 8 HOH 109 309 309 HOH HOH A . R 8 HOH 110 310 310 HOH HOH A . R 8 HOH 111 311 311 HOH HOH A . R 8 HOH 112 312 312 HOH HOH A . R 8 HOH 113 313 313 HOH HOH A . S 8 HOH 1 201 201 HOH HOH B . S 8 HOH 2 202 202 HOH HOH B . S 8 HOH 3 203 203 HOH HOH B . S 8 HOH 4 204 204 HOH HOH B . S 8 HOH 5 205 205 HOH HOH B . S 8 HOH 6 206 206 HOH HOH B . S 8 HOH 7 207 207 HOH HOH B . S 8 HOH 8 208 208 HOH HOH B . S 8 HOH 9 209 209 HOH HOH B . S 8 HOH 10 210 210 HOH HOH B . S 8 HOH 11 211 211 HOH HOH B . S 8 HOH 12 212 212 HOH HOH B . S 8 HOH 13 213 213 HOH HOH B . S 8 HOH 14 214 214 HOH HOH B . S 8 HOH 15 215 215 HOH HOH B . S 8 HOH 16 216 216 HOH HOH B . S 8 HOH 17 217 217 HOH HOH B . S 8 HOH 18 218 218 HOH HOH B . S 8 HOH 19 219 219 HOH HOH B . S 8 HOH 20 220 220 HOH HOH B . S 8 HOH 21 221 221 HOH HOH B . S 8 HOH 22 222 222 HOH HOH B . S 8 HOH 23 223 223 HOH HOH B . S 8 HOH 24 224 224 HOH HOH B . S 8 HOH 25 225 225 HOH HOH B . S 8 HOH 26 226 226 HOH HOH B . S 8 HOH 27 227 227 HOH HOH B . S 8 HOH 28 228 228 HOH HOH B . S 8 HOH 29 229 229 HOH HOH B . S 8 HOH 30 230 230 HOH HOH B . S 8 HOH 31 231 231 HOH HOH B . S 8 HOH 32 232 232 HOH HOH B . S 8 HOH 33 233 233 HOH HOH B . S 8 HOH 34 234 234 HOH HOH B . S 8 HOH 35 235 235 HOH HOH B . S 8 HOH 36 236 236 HOH HOH B . S 8 HOH 37 237 237 HOH HOH B . S 8 HOH 38 238 238 HOH HOH B . S 8 HOH 39 239 239 HOH HOH B . S 8 HOH 40 240 240 HOH HOH B . S 8 HOH 41 241 241 HOH HOH B . S 8 HOH 42 242 242 HOH HOH B . S 8 HOH 43 243 243 HOH HOH B . S 8 HOH 44 244 244 HOH HOH B . S 8 HOH 45 245 245 HOH HOH B . S 8 HOH 46 246 246 HOH HOH B . S 8 HOH 47 247 247 HOH HOH B . S 8 HOH 48 248 248 HOH HOH B . S 8 HOH 49 249 249 HOH HOH B . S 8 HOH 50 250 250 HOH HOH B . S 8 HOH 51 251 251 HOH HOH B . S 8 HOH 52 252 252 HOH HOH B . S 8 HOH 53 253 253 HOH HOH B . S 8 HOH 54 254 254 HOH HOH B . S 8 HOH 55 255 255 HOH HOH B . S 8 HOH 56 256 256 HOH HOH B . S 8 HOH 57 257 257 HOH HOH B . S 8 HOH 58 258 258 HOH HOH B . S 8 HOH 59 259 259 HOH HOH B . S 8 HOH 60 260 260 HOH HOH B . S 8 HOH 61 261 261 HOH HOH B . S 8 HOH 62 262 262 HOH HOH B . S 8 HOH 63 263 263 HOH HOH B . S 8 HOH 64 264 264 HOH HOH B . S 8 HOH 65 265 265 HOH HOH B . S 8 HOH 66 266 266 HOH HOH B . S 8 HOH 67 267 267 HOH HOH B . S 8 HOH 68 268 268 HOH HOH B . S 8 HOH 69 269 269 HOH HOH B . S 8 HOH 70 270 270 HOH HOH B . S 8 HOH 71 271 271 HOH HOH B . S 8 HOH 72 272 272 HOH HOH B . S 8 HOH 73 273 273 HOH HOH B . S 8 HOH 74 274 274 HOH HOH B . S 8 HOH 75 275 275 HOH HOH B . S 8 HOH 76 276 276 HOH HOH B . S 8 HOH 77 277 277 HOH HOH B . S 8 HOH 78 278 278 HOH HOH B . S 8 HOH 79 279 279 HOH HOH B . S 8 HOH 80 280 280 HOH HOH B . S 8 HOH 81 281 281 HOH HOH B . S 8 HOH 82 282 282 HOH HOH B . S 8 HOH 83 283 283 HOH HOH B . S 8 HOH 84 284 284 HOH HOH B . S 8 HOH 85 285 285 HOH HOH B . S 8 HOH 86 286 286 HOH HOH B . S 8 HOH 87 287 287 HOH HOH B . S 8 HOH 88 288 288 HOH HOH B . S 8 HOH 89 289 289 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1160 ? 1 MORE -21 ? 1 'SSA (A^2)' 5290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 215 ? R HOH . 2 1 A HOH 309 ? R HOH . 3 1 A HOH 311 ? R HOH . 4 1 B HOH 248 ? S HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 205 ? 1_555 95.6 ? 2 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 208 ? 1_555 91.6 ? 3 O ? R HOH . ? A HOH 205 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 208 ? 1_555 159.9 ? 4 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 219 ? 1_555 82.8 ? 5 O ? R HOH . ? A HOH 205 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 219 ? 1_555 93.5 ? 6 O ? R HOH . ? A HOH 208 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 219 ? 1_555 68.8 ? 7 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 236 ? 1_555 93.5 ? 8 O ? R HOH . ? A HOH 205 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 236 ? 1_555 85.1 ? 9 O ? R HOH . ? A HOH 208 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 236 ? 1_555 113.2 ? 10 O ? R HOH . ? A HOH 219 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 236 ? 1_555 175.9 ? 11 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 249 ? 1_555 159.6 ? 12 O ? R HOH . ? A HOH 205 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 249 ? 1_555 92.4 ? 13 O ? R HOH . ? A HOH 208 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 249 ? 1_555 75.1 ? 14 O ? R HOH . ? A HOH 219 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 249 ? 1_555 78.0 ? 15 O ? R HOH . ? A HOH 236 ? 1_555 NI ? J NI . ? A NI 108 ? 1_555 O ? R HOH . ? A HOH 249 ? 1_555 106.0 ? 16 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 208 ? 1_555 90.6 ? 17 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 206 ? 1_555 93.1 ? 18 O ? S HOH . ? B HOH 208 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 206 ? 1_555 162.7 ? 19 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 222 ? 1_555 83.8 ? 20 O ? S HOH . ? B HOH 208 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 222 ? 1_555 73.8 ? 21 O ? S HOH . ? B HOH 206 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 222 ? 1_555 89.8 ? 22 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 228 ? 1_555 92.7 ? 23 O ? S HOH . ? B HOH 208 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 228 ? 1_555 115.4 ? 24 O ? S HOH . ? B HOH 206 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 228 ? 1_555 81.3 ? 25 O ? S HOH . ? B HOH 222 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? S HOH . ? B HOH 228 ? 1_555 170.3 ? 26 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? R HOH . ? A HOH 254 ? 6_565 171.6 ? 27 O ? S HOH . ? B HOH 208 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? R HOH . ? A HOH 254 ? 6_565 88.3 ? 28 O ? S HOH . ? B HOH 206 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? R HOH . ? A HOH 254 ? 6_565 90.4 ? 29 O ? S HOH . ? B HOH 222 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? R HOH . ? A HOH 254 ? 6_565 103.9 ? 30 O ? S HOH . ? B HOH 228 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? R HOH . ? A HOH 254 ? 6_565 80.3 ? 31 O1 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O9 ? E CPH . ? A CPH 103 ? 1_555 88.3 ? 32 O1 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O1 ? M CPH . ? B CPH 103 ? 1_555 87.8 ? 33 O9 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O1 ? M CPH . ? B CPH 103 ? 1_555 94.4 ? 34 O1 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O9 ? M CPH . ? B CPH 103 ? 1_555 94.5 ? 35 O9 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O9 ? M CPH . ? B CPH 103 ? 1_555 176.9 ? 36 O1 ? M CPH . ? B CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O9 ? M CPH . ? B CPH 103 ? 1_555 87.1 ? 37 O1 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? R HOH . ? A HOH 203 ? 1_555 91.2 ? 38 O9 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? R HOH . ? A HOH 203 ? 1_555 94.1 ? 39 O1 ? M CPH . ? B CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? R HOH . ? A HOH 203 ? 1_555 171.5 ? 40 O9 ? M CPH . ? B CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? R HOH . ? A HOH 203 ? 1_555 84.6 ? 41 O1 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? S HOH . ? B HOH 207 ? 1_555 171.1 ? 42 O9 ? E CPH . ? A CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? S HOH . ? B HOH 207 ? 1_555 83.0 ? 43 O1 ? M CPH . ? B CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? S HOH . ? B HOH 207 ? 1_555 90.9 ? 44 O9 ? M CPH . ? B CPH 103 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? S HOH . ? B HOH 207 ? 1_555 94.2 ? 45 O ? R HOH . ? A HOH 203 ? 1_555 NI ? I NI . ? A NI 107 ? 1_555 O ? S HOH . ? B HOH 207 ? 1_555 91.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-16 2 'Structure model' 1 1 2017-07-26 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DT 1 ? ? C2 A DT 1 ? ? 1.452 1.376 0.076 0.008 N 2 1 C4 A DT 1 ? ? C5 A DT 1 ? ? 1.514 1.445 0.069 0.009 N 3 1 C2 A DT 1 ? ? O2 A DT 1 ? ? 1.297 1.220 0.077 0.008 N 4 1 C6 A DT 2 ? ? N1 A DT 2 ? ? 1.334 1.378 -0.044 0.007 N 5 1 C2 A DT 2 ? ? O2 A DT 2 ? ? 1.274 1.220 0.054 0.008 N 6 1 "O3'" A DG 5 ? ? P A DC 6 ? ? 1.530 1.607 -0.077 0.012 Y 7 1 N1 B DT 14 ? ? C2 B DT 14 ? ? 1.461 1.376 0.085 0.008 N 8 1 C2 B DT 14 ? ? O2 B DT 14 ? ? 1.286 1.220 0.066 0.008 N 9 1 "O3'" B DG 18 ? ? P B DC 19 ? ? 1.532 1.607 -0.075 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.46 108.30 3.16 0.30 N 2 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 119.41 114.60 4.81 0.60 N 3 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 119.97 127.20 -7.23 0.60 N 4 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.78 115.20 4.58 0.60 N 5 1 C5 A DT 1 ? ? C6 A DT 1 ? ? N1 A DT 1 ? ? 118.75 123.70 -4.95 0.60 N 6 1 C4 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 124.43 119.00 5.43 0.60 N 7 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 116.27 122.90 -6.63 0.60 N 8 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.98 108.30 2.68 0.30 N 9 1 C6 A DT 2 ? ? N1 A DT 2 ? ? C2 A DT 2 ? ? 117.17 121.30 -4.13 0.50 N 10 1 N1 A DT 2 ? ? C2 A DT 2 ? ? N3 A DT 2 ? ? 120.57 114.60 5.97 0.60 N 11 1 C4 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 123.93 119.00 4.93 0.60 N 12 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 117.39 122.90 -5.51 0.60 N 13 1 "O5'" A DG 11 ? ? P A DG 11 ? ? OP2 A DG 11 ? ? 99.15 105.70 -6.55 0.90 N 14 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.69 108.30 2.39 0.30 N 15 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 114.45 108.30 6.15 0.30 N 16 1 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 119.22 114.60 4.62 0.60 N 17 1 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 120.57 127.20 -6.63 0.60 N 18 1 N3 B DT 14 ? ? C4 B DT 14 ? ? C5 B DT 14 ? ? 119.28 115.20 4.08 0.60 N 19 1 C5 B DT 14 ? ? C6 B DT 14 ? ? N1 B DT 14 ? ? 120.07 123.70 -3.63 0.60 N 20 1 C5 B DT 14 ? ? C4 B DT 14 ? ? O4 B DT 14 ? ? 119.03 124.90 -5.87 0.70 N 21 1 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.46 119.00 4.46 0.60 N 22 1 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 117.05 122.90 -5.85 0.60 N 23 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 119.05 108.30 10.75 0.30 N 24 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 118.88 114.60 4.28 0.60 N 25 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 121.86 127.20 -5.34 0.60 N 26 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 119.76 115.20 4.56 0.60 N 27 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 117.59 124.90 -7.31 0.70 N 28 1 C4 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 122.79 119.00 3.79 0.60 N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 304 ? 6.12 . 2 1 O ? A HOH 305 ? 6.24 . 3 1 O ? A HOH 306 ? . 6.93 4 1 O ? A HOH 307 ? 7.00 . 5 1 O ? A HOH 308 ? 7.38 . 6 1 O ? A HOH 309 ? . 7.75 7 1 O ? A HOH 310 ? . 8.30 8 1 O ? A HOH 311 ? 8.33 . 9 1 O ? A HOH 312 ? . 8.74 10 1 O ? A HOH 313 ? 8.89 . 11 1 O ? B HOH 282 ? 6.17 . 12 1 O ? B HOH 283 ? 6.41 . 13 1 O ? B HOH 284 ? 7.04 . 14 1 O ? B HOH 285 ? 7.73 . 15 1 O ? B HOH 286 ? . 7.76 16 1 O ? B HOH 287 ? 8.08 . 17 1 O ? B HOH 288 ? . 8.87 18 1 O ? B HOH 289 ? 9.56 . # _ndb_struct_conf_na.entry_id 5ERZ _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 13 1_555 -0.714 3.634 0.669 -15.516 10.288 -68.067 1 A_DT1:DA26_B A 1 ? B 26 ? 23 3 1 A DT 2 1_555 B DA 12 1_555 -0.297 -0.124 -0.151 -1.038 -6.805 -5.206 2 A_DT2:DA25_B A 2 ? B 25 ? 20 1 1 A DC 4 1_555 B DG 11 1_555 0.292 -0.368 -0.307 6.563 -13.805 -0.617 3 A_DC4:DG24_B A 4 ? B 24 ? 19 1 1 A DG 5 1_555 B DC 10 1_555 -0.040 -0.144 -0.042 1.955 -13.777 0.861 4 A_DG5:DC23_B A 5 ? B 23 ? 19 1 1 A DG 8 1_555 B DC 9 1_555 -0.301 -0.137 0.082 1.209 -9.949 -0.145 5 A_DG8:DC22_B A 8 ? B 22 ? 19 1 1 A DC 9 1_555 B DG 8 1_555 0.269 -0.131 0.109 -2.242 -8.925 0.184 6 A_DC9:DG21_B A 9 ? B 21 ? 19 1 1 A DC 10 1_555 B DG 5 1_555 0.052 -0.140 0.054 -1.893 -13.330 1.462 7 A_DC10:DG18_B A 10 ? B 18 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 -0.200 -0.246 -0.332 -7.381 -11.601 0.721 8 A_DG11:DC17_B A 11 ? B 17 ? 19 1 1 A DA 12 1_555 B DT 2 1_555 0.632 -0.214 0.178 2.845 3.813 -9.880 9 A_DA12:DT15_B A 12 ? B 15 ? 20 1 1 A DA 13 1_555 B DT 1 1_555 1.009 -3.578 -0.605 16.647 -8.091 71.355 10 A_DA13:DT14_B A 13 ? B 14 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 13 1_555 A DT 2 1_555 B DA 12 1_555 -0.767 3.129 3.318 3.115 -0.203 -19.034 -9.233 -0.668 3.430 0.610 9.339 -19.286 1 AA_DT1DT2:DA25DA26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DT 2 1_555 B DA 12 1_555 A DC 4 1_555 B DG 11 1_555 0.471 -0.141 3.243 4.217 -1.915 33.966 0.062 -0.135 3.279 -3.260 -7.177 34.271 2 AA_DT2DC4:DG24DA25_BB A 2 ? B 25 ? A 4 ? B 24 ? 1 A DC 4 1_555 B DG 11 1_555 A DG 5 1_555 B DC 10 1_555 0.672 0.369 3.586 -1.685 8.551 36.524 -0.663 -1.288 3.546 13.410 2.643 37.515 3 AA_DC4DG5:DC23DG24_BB A 4 ? B 24 ? A 5 ? B 23 ? 1 A DG 5 1_555 B DC 10 1_555 A DG 8 1_555 B DC 9 1_555 1.888 -1.941 3.236 -1.002 10.953 18.755 -8.694 -5.335 1.742 30.451 2.787 21.717 4 AA_DG5DG8:DC22DC23_BB A 5 ? B 23 ? A 8 ? B 22 ? 1 A DG 8 1_555 B DC 9 1_555 A DC 9 1_555 B DG 8 1_555 0.007 -2.035 3.476 -0.425 -5.388 36.803 -2.398 -0.073 3.726 -8.478 0.668 37.184 5 AA_DG8DC9:DG21DC22_BB A 8 ? B 22 ? A 9 ? B 21 ? 1 A DC 9 1_555 B DG 8 1_555 A DC 10 1_555 B DG 5 1_555 -1.899 -1.991 3.157 0.282 11.463 18.897 -8.683 5.045 1.658 31.439 -0.772 22.077 6 AA_DC9DC10:DG18DG21_BB A 9 ? B 21 ? A 10 ? B 18 ? 1 A DC 10 1_555 B DG 5 1_555 A DG 11 1_555 B DC 4 1_555 -0.665 0.376 3.581 2.657 7.059 37.451 -0.405 1.385 3.537 10.859 -4.087 38.176 7 AA_DC10DG11:DC17DG18_BB A 10 ? B 18 ? A 11 ? B 17 ? 1 A DG 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 2 1_555 -0.395 -0.022 3.137 -4.719 -5.372 38.105 0.603 0.037 3.137 -8.141 7.151 38.746 8 AA_DG11DA12:DT15DC17_BB A 11 ? B 17 ? A 12 ? B 15 ? 1 A DA 12 1_555 B DT 2 1_555 A DA 13 1_555 B DT 1 1_555 -2.088 3.873 -1.570 171.562 -31.598 -152.233 -1.963 -1.190 -0.863 15.814 85.861 -178.668 9 AA_DA12DA13:DT14DT15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE 1GL 3 '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' ARI 4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 5 2,3-DIDEOXYFUCOSE CDR 6 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE ERI 7 'NICKEL (II) ION' NI 8 water HOH #