data_5ES0 # _entry.id 5ES0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.291 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5ES0 WWPDB D_1000215362 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2018-05-16 _pdbx_database_PDB_obs_spr.pdb_id 5XJW _pdbx_database_PDB_obs_spr.replace_pdb_id 5ES0 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5ERZ _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ES0 _pdbx_database_status.recvd_initial_deposition_date 2015-11-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tseng, W.H.' 1 'Wu, P.C.' 2 'Hou, M.H.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of the [Co2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tseng, W.H.' 1 primary 'Wu, P.C.' 2 primary 'Hou, M.H.' 3 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5ES0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.309 _cell.length_a_esd ? _cell.length_b 48.309 _cell.length_b_esd ? _cell.length_c 83.636 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ES0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*AP*A)-3') ; 3912.550 2 ? ? ? ? 2 non-polymer man 2,3-DIDEOXYFUCOSE 132.158 4 ? ? ? ? 3 non-polymer man 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE 204.220 2 ? ? ? ? 4 non-polymer man 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE 162.184 2 ? ? ? ? 5 non-polymer man '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 174.194 2 ? ? ? ? 6 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? 7 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ? 8 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTCCGCCGCCGAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DG n 1 12 DA n 1 13 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5ES0 _struct_ref.pdbx_db_accession 5ES0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ES0 A 1 ? 13 ? 5ES0 1 ? 13 ? 1 13 2 1 5ES0 B 1 ? 13 ? 5ES0 14 ? 26 ? 14 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL D-saccharide . 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE ? 'C7 H14 O4' 162.184 ARI D-saccharide . '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' ? 'C8 H14 O4' 174.194 CDR saccharide . 2,3-DIDEOXYFUCOSE ? 'C6 H12 O3' 132.158 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI saccharide . 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE ? 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ES0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.60 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.0 mM single stranded-DNA, 2.0 mM Chromomycin A3, 4mM CoCl2 6H2O, 50 mM sodium-cacodylate buffer, 5 mM MgCl2, 1 mM spermine, 3 % MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-09-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'LN2-Cooled, Fixed-Exit Double Crystal Monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.56418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.56418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5ES0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6739 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.100 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 31.213 _reflns.pdbx_netI_over_sigmaI 24.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.887 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 40848 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.100 2.180 ? ? ? ? ? 637 ? 97.800 ? ? ? ? 0.267 ? ? ? ? ? ? ? ? 4.200 ? 0.961 ? ? ? ? 0 1 1 ? ? 2.180 2.260 ? ? ? ? ? 656 ? 100.000 ? ? ? ? 0.249 ? ? ? ? ? ? ? ? 5.800 ? 1.063 ? ? ? ? 0 2 1 ? ? 2.260 2.370 ? ? ? ? ? 669 ? 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 6.400 ? 1.234 ? ? ? ? 0 3 1 ? ? 2.370 2.490 ? ? ? ? ? 667 ? 100.000 ? ? ? ? 0.137 ? ? ? ? ? ? ? ? 6.400 ? 1.217 ? ? ? ? 0 4 1 ? ? 2.490 2.650 ? ? ? ? ? 674 ? 100.000 ? ? ? ? 0.121 ? ? ? ? ? ? ? ? 6.500 ? 1.289 ? ? ? ? 0 5 1 ? ? 2.650 2.850 ? ? ? ? ? 694 ? 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 6.500 ? 1.792 ? ? ? ? 0 6 1 ? ? 2.850 3.140 ? ? ? ? ? 657 ? 100.000 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 6.400 ? 1.955 ? ? ? ? 0 7 1 ? ? 3.140 3.590 ? ? ? ? ? 683 ? 100.000 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 6.100 ? 2.121 ? ? ? ? 0 8 1 ? ? 3.590 4.520 ? ? ? ? ? 682 ? 99.700 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 6.200 ? 2.346 ? ? ? ? 0 9 1 ? ? 4.520 30.000 ? ? ? ? ? 720 ? 98.100 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 6.000 ? 4.416 ? ? ? ? 0 10 1 ? ? # _refine.aniso_B[1][1] 0.9600 _refine.aniso_B[1][2] 0.9600 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.9600 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -3.1100 _refine.B_iso_max 170.140 _refine.B_iso_mean 54.7430 _refine.B_iso_min 26.780 _refine.correlation_coeff_Fo_to_Fc 0.9670 _refine.correlation_coeff_Fo_to_Fc_free 0.9450 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5ES0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 29.5900 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6359 _refine.ls_number_reflns_R_free 312 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6400 _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2034 _refine.ls_R_factor_R_free 0.2583 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2008 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2250 _refine.pdbx_overall_ESU_R_Free 0.2000 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.8630 _refine.overall_SU_ML 0.1520 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 29.5900 _refine_hist.pdbx_number_atoms_ligand 169 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 831 _refine_hist.pdbx_number_residues_total 26 _refine_hist.pdbx_B_iso_mean_ligand 39.25 _refine_hist.pdbx_B_iso_mean_solvent 66.82 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 518 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.1010 _refine_ls_shell.d_res_low 2.1550 _refine_ls_shell.number_reflns_all 451 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_R_work 416 _refine_ls_shell.percent_reflns_obs 97.8300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3250 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3180 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5ES0 _struct.title 'Crystal structure of the [Co2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex' _struct.pdbx_descriptor ;DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*AP*A)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5ES0 _struct_keywords.text ;nucleotide flipping-out, CCG trinucleotide repeats, Chromomycin A3, Metalloantibiotics, minor groove binding drug, DNA-ANTIBIOTIC complex ; _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 3 ? K N N 2 ? L N N 2 ? M N N 4 ? N N N 5 ? O N N 6 ? P N N 7 ? Q N N 7 ? R N N 8 ? S N N 8 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A DG 8 N7 ? ? ? 1_555 I CO . CO ? ? A DG 8 A CO 107 1_555 ? ? ? ? ? ? ? 2.256 ? metalc2 metalc ? ? B DG 8 N7 ? ? ? 1_555 Q CO . CO ? ? B DG 21 B CO 108 1_555 ? ? ? ? ? ? ? 2.240 ? covale1 covale none ? C CDR . C3 ? ? ? 1_555 D ERI . O1 ? ? A CDR 101 A ERI 102 1_555 ? ? ? ? ? ? ? 1.482 ? covale2 covale none ? G ARI . OGL ? ? ? 1_555 H CPH . C6 ? ? A ARI 105 A CPH 106 1_555 ? ? ? ? ? ? ? 1.571 ? covale3 covale none ? L CDR . C3 ? ? ? 1_555 J ERI . O1 ? ? B CDR 103 B ERI 101 1_555 ? ? ? ? ? ? ? 1.582 ? covale4 covale none ? N ARI . OGL ? ? ? 1_555 O CPH . C6 ? ? B ARI 105 B CPH 106 1_555 ? ? ? ? ? ? ? 1.606 ? covale5 covale none ? O CPH . C2 ? ? ? 1_555 E CDR . OGL ? ? B CPH 106 A CDR 103 1_555 ? ? ? ? ? ? ? 1.725 ? covale6 covale none ? C CDR . OGL ? ? ? 1_555 E CDR . C3 ? ? A CDR 101 A CDR 103 1_555 ? ? ? ? ? ? ? 1.785 ? covale7 covale none ? K CDR . C3 ? ? ? 1_555 L CDR . OGL ? ? B CDR 102 B CDR 103 1_555 ? ? ? ? ? ? ? 1.790 ? covale8 covale none ? M 1GL . O1 ? ? ? 1_555 N ARI . C3 ? ? B 1GL 104 B ARI 105 1_555 ? ? ? ? ? ? ? 1.790 ? covale9 covale none ? H CPH . C2 ? ? ? 1_555 K CDR . OGL ? ? A CPH 106 B CDR 102 1_555 ? ? ? ? ? ? ? 1.858 ? covale10 covale none ? F 1GL . O1 ? ? ? 1_555 G ARI . C3 ? ? A 1GL 104 A ARI 105 1_555 ? ? ? ? ? ? ? 1.957 ? metalc3 metalc ? ? H CPH . O1 ? ? ? 1_555 P CO . CO ? ? A CPH 106 B CO 107 1_555 ? ? ? ? ? ? ? 1.871 ? metalc4 metalc ? ? H CPH . O9 ? ? ? 1_555 P CO . CO ? ? A CPH 106 B CO 107 1_555 ? ? ? ? ? ? ? 1.859 ? metalc5 metalc ? ? I CO . CO ? ? ? 1_555 R HOH . O ? ? A CO 107 A HOH 202 1_555 ? ? ? ? ? ? ? 2.083 ? metalc6 metalc ? ? I CO . CO ? ? ? 1_555 R HOH . O ? ? A CO 107 A HOH 207 1_555 ? ? ? ? ? ? ? 1.994 ? metalc7 metalc ? ? I CO . CO ? ? ? 1_555 R HOH . O ? ? A CO 107 A HOH 211 1_555 ? ? ? ? ? ? ? 1.781 ? metalc8 metalc ? ? I CO . CO ? ? ? 1_555 R HOH . O ? ? A CO 107 A HOH 218 1_555 ? ? ? ? ? ? ? 1.877 ? metalc9 metalc ? ? I CO . CO ? ? ? 1_555 R HOH . O ? ? A CO 107 A HOH 240 1_555 ? ? ? ? ? ? ? 2.475 ? metalc10 metalc ? ? O CPH . O1 ? ? ? 1_555 P CO . CO ? ? B CPH 106 B CO 107 1_555 ? ? ? ? ? ? ? 1.896 ? metalc11 metalc ? ? O CPH . O9 ? ? ? 1_555 P CO . CO ? ? B CPH 106 B CO 107 1_555 ? ? ? ? ? ? ? 1.858 ? metalc12 metalc ? ? P CO . CO ? ? ? 1_555 S HOH . O ? ? B CO 107 B HOH 204 1_555 ? ? ? ? ? ? ? 2.210 ? metalc13 metalc ? ? P CO . CO ? ? ? 1_555 R HOH . O ? ? B CO 107 A HOH 204 1_555 ? ? ? ? ? ? ? 2.181 ? metalc14 metalc ? ? Q CO . CO ? ? ? 1_555 S HOH . O ? ? B CO 108 B HOH 249 1_555 ? ? ? ? ? ? ? 2.322 ? metalc15 metalc ? ? Q CO . CO ? ? ? 1_555 S HOH . O ? ? B CO 108 B HOH 209 1_555 ? ? ? ? ? ? ? 2.008 ? metalc16 metalc ? ? Q CO . CO ? ? ? 1_555 S HOH . O ? ? B CO 108 B HOH 210 1_555 ? ? ? ? ? ? ? 1.996 ? metalc17 metalc ? ? Q CO . CO ? ? ? 1_555 S HOH . O ? ? B CO 108 B HOH 215 1_555 ? ? ? ? ? ? ? 1.847 ? metalc18 metalc ? ? Q CO . CO ? ? ? 1_555 S HOH . O ? ? B CO 108 B HOH 205 1_555 ? ? ? ? ? ? ? 2.126 ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N7 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog26 hydrog ? ? A DA 13 N7 ? ? ? 1_555 B DT 1 N3 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CO 107 ? 6 'binding site for residue CO A 107' AC2 Software B CO 107 ? 4 'binding site for residue CO B 107' AC3 Software B CO 108 ? 6 'binding site for residue CO B 108' AC4 Software ? ? ? ? 31 'binding site for Poly-Saccharide residues CDR A 101 through CPH B 106' AC5 Software A CDR 101 ? 7 'binding site for Di-Saccharide CDR A 101 and CDR A 103' AC6 Software ? ? ? ? 31 'binding site for Poly-Saccharide residues ERI B 101 through CPH A 106' AC7 Software A ARI 105 ? 17 'binding site for Di-Saccharide ARI A 105 and CPH A 106' AC8 Software B CDR 102 ? 25 'binding site for Di-Saccharide CDR B 102 and CDR B 103' AC9 Software B CDR 103 ? 8 'binding site for Di-Saccharide CDR B 103 and ERI B 101' AD1 Software B 1GL 104 ? 8 'binding site for Di-Saccharide 1GL B 104 and ARI B 105' AD2 Software B ARI 105 ? 17 'binding site for Di-Saccharide ARI B 105 and CPH B 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 8 ? DG A 8 . ? 1_555 ? 2 AC1 6 HOH R . ? HOH A 202 . ? 1_555 ? 3 AC1 6 HOH R . ? HOH A 207 . ? 1_555 ? 4 AC1 6 HOH R . ? HOH A 211 . ? 1_555 ? 5 AC1 6 HOH R . ? HOH A 218 . ? 1_555 ? 6 AC1 6 HOH R . ? HOH A 240 . ? 1_555 ? 7 AC2 4 CPH H . ? CPH A 106 . ? 1_555 ? 8 AC2 4 HOH R . ? HOH A 204 . ? 1_555 ? 9 AC2 4 CPH O . ? CPH B 106 . ? 1_555 ? 10 AC2 4 HOH S . ? HOH B 204 . ? 1_555 ? 11 AC3 6 DG B 8 ? DG B 21 . ? 1_555 ? 12 AC3 6 HOH S . ? HOH B 205 . ? 1_555 ? 13 AC3 6 HOH S . ? HOH B 209 . ? 1_555 ? 14 AC3 6 HOH S . ? HOH B 210 . ? 1_555 ? 15 AC3 6 HOH S . ? HOH B 215 . ? 1_555 ? 16 AC3 6 HOH S . ? HOH B 249 . ? 1_555 ? 17 AC4 31 DG A 5 ? DG A 5 . ? 1_555 ? 18 AC4 31 DC A 6 ? DC A 6 . ? 1_555 ? 19 AC4 31 DG A 8 ? DG A 8 . ? 1_555 ? 20 AC4 31 DC A 9 ? DC A 9 . ? 1_555 ? 21 AC4 31 DC A 10 ? DC A 10 . ? 1_555 ? 22 AC4 31 DG A 11 ? DG A 11 . ? 1_555 ? 23 AC4 31 HOH R . ? HOH A 203 . ? 1_555 ? 24 AC4 31 HOH R . ? HOH A 204 . ? 1_555 ? 25 AC4 31 HOH R . ? HOH A 209 . ? 1_555 ? 26 AC4 31 HOH R . ? HOH A 209 . ? 6_545 ? 27 AC4 31 HOH R . ? HOH A 215 . ? 1_555 ? 28 AC4 31 HOH R . ? HOH A 216 . ? 1_555 ? 29 AC4 31 HOH R . ? HOH A 217 . ? 1_555 ? 30 AC4 31 HOH R . ? HOH A 227 . ? 1_555 ? 31 AC4 31 HOH R . ? HOH A 236 . ? 1_555 ? 32 AC4 31 DG B 5 ? DG B 18 . ? 1_555 ? 33 AC4 31 DC B 6 ? DC B 19 . ? 1_555 ? 34 AC4 31 DG B 8 ? DG B 21 . ? 1_555 ? 35 AC4 31 DC B 9 ? DC B 22 . ? 1_555 ? 36 AC4 31 DC B 10 ? DC B 23 . ? 1_555 ? 37 AC4 31 DG B 11 ? DG B 24 . ? 1_555 ? 38 AC4 31 CO P . ? CO B 107 . ? 1_555 ? 39 AC4 31 HOH S . ? HOH B 202 . ? 1_555 ? 40 AC4 31 HOH S . ? HOH B 204 . ? 1_555 ? 41 AC4 31 HOH S . ? HOH B 206 . ? 1_555 ? 42 AC4 31 HOH S . ? HOH B 206 . ? 4_555 ? 43 AC4 31 HOH S . ? HOH B 207 . ? 1_555 ? 44 AC4 31 HOH S . ? HOH B 216 . ? 1_555 ? 45 AC4 31 HOH S . ? HOH B 217 . ? 1_555 ? 46 AC4 31 HOH S . ? HOH B 218 . ? 1_555 ? 47 AC4 31 HOH S . ? HOH B 248 . ? 1_555 ? 48 AC5 7 ERI D . ? ERI A 102 . ? 1_555 ? 49 AC5 7 ARI G . ? ARI A 105 . ? 1_555 ? 50 AC5 7 CPH H . ? CPH A 106 . ? 1_555 ? 51 AC5 7 HOH R . ? HOH A 215 . ? 1_555 ? 52 AC5 7 DC B 10 ? DC B 23 . ? 1_555 ? 53 AC5 7 DG B 11 ? DG B 24 . ? 1_555 ? 54 AC5 7 CPH O . ? CPH B 106 . ? 1_555 ? 55 AC6 31 DG A 5 ? DG A 5 . ? 1_555 ? 56 AC6 31 DC A 6 ? DC A 6 . ? 1_555 ? 57 AC6 31 DG A 8 ? DG A 8 . ? 1_555 ? 58 AC6 31 DC A 9 ? DC A 9 . ? 1_555 ? 59 AC6 31 DC A 10 ? DC A 10 . ? 1_555 ? 60 AC6 31 DG A 11 ? DG A 11 . ? 1_555 ? 61 AC6 31 HOH R . ? HOH A 203 . ? 1_555 ? 62 AC6 31 HOH R . ? HOH A 204 . ? 1_555 ? 63 AC6 31 HOH R . ? HOH A 209 . ? 1_555 ? 64 AC6 31 HOH R . ? HOH A 209 . ? 6_545 ? 65 AC6 31 HOH R . ? HOH A 215 . ? 1_555 ? 66 AC6 31 HOH R . ? HOH A 216 . ? 1_555 ? 67 AC6 31 HOH R . ? HOH A 217 . ? 1_555 ? 68 AC6 31 HOH R . ? HOH A 227 . ? 1_555 ? 69 AC6 31 HOH R . ? HOH A 236 . ? 1_555 ? 70 AC6 31 DG B 5 ? DG B 18 . ? 1_555 ? 71 AC6 31 DC B 6 ? DC B 19 . ? 1_555 ? 72 AC6 31 DG B 8 ? DG B 21 . ? 1_555 ? 73 AC6 31 DC B 9 ? DC B 22 . ? 1_555 ? 74 AC6 31 DC B 10 ? DC B 23 . ? 1_555 ? 75 AC6 31 DG B 11 ? DG B 24 . ? 1_555 ? 76 AC6 31 CO P . ? CO B 107 . ? 1_555 ? 77 AC6 31 HOH S . ? HOH B 202 . ? 1_555 ? 78 AC6 31 HOH S . ? HOH B 204 . ? 1_555 ? 79 AC6 31 HOH S . ? HOH B 206 . ? 1_555 ? 80 AC6 31 HOH S . ? HOH B 206 . ? 4_555 ? 81 AC6 31 HOH S . ? HOH B 207 . ? 1_555 ? 82 AC6 31 HOH S . ? HOH B 216 . ? 1_555 ? 83 AC6 31 HOH S . ? HOH B 217 . ? 1_555 ? 84 AC6 31 HOH S . ? HOH B 218 . ? 1_555 ? 85 AC6 31 HOH S . ? HOH B 248 . ? 1_555 ? 86 AC7 17 DG A 5 ? DG A 5 . ? 1_555 ? 87 AC7 17 DG A 8 ? DG A 8 . ? 1_555 ? 88 AC7 17 DC A 9 ? DC A 9 . ? 1_555 ? 89 AC7 17 DC A 10 ? DC A 10 . ? 1_555 ? 90 AC7 17 CDR C . ? CDR A 101 . ? 1_555 ? 91 AC7 17 ERI D . ? ERI A 102 . ? 1_555 ? 92 AC7 17 CDR E . ? CDR A 103 . ? 1_555 ? 93 AC7 17 1GL F . ? 1GL A 104 . ? 1_555 ? 94 AC7 17 HOH R . ? HOH A 204 . ? 1_555 ? 95 AC7 17 HOH R . ? HOH A 216 . ? 1_555 ? 96 AC7 17 HOH R . ? HOH A 217 . ? 1_555 ? 97 AC7 17 HOH R . ? HOH A 236 . ? 1_555 ? 98 AC7 17 DC B 10 ? DC B 23 . ? 1_555 ? 99 AC7 17 CDR K . ? CDR B 102 . ? 1_555 ? 100 AC7 17 CPH O . ? CPH B 106 . ? 1_555 ? 101 AC7 17 CO P . ? CO B 107 . ? 1_555 ? 102 AC7 17 HOH S . ? HOH B 204 . ? 1_555 ? 103 AC8 25 DG A 5 ? DG A 5 . ? 1_555 ? 104 AC8 25 DC A 6 ? DC A 6 . ? 1_555 ? 105 AC8 25 DG A 8 ? DG A 8 . ? 1_555 ? 106 AC8 25 DC A 9 ? DC A 9 . ? 1_555 ? 107 AC8 25 DC A 10 ? DC A 10 . ? 1_555 ? 108 AC8 25 DG A 11 ? DG A 11 . ? 1_555 ? 109 AC8 25 CDR C . ? CDR A 101 . ? 1_555 ? 110 AC8 25 ARI G . ? ARI A 105 . ? 1_555 ? 111 AC8 25 HOH R . ? HOH A 203 . ? 1_555 ? 112 AC8 25 HOH R . ? HOH A 204 . ? 1_555 ? 113 AC8 25 HOH R . ? HOH A 217 . ? 1_555 ? 114 AC8 25 HOH R . ? HOH A 227 . ? 1_555 ? 115 AC8 25 HOH R . ? HOH A 236 . ? 1_555 ? 116 AC8 25 DG B 5 ? DG B 18 . ? 1_555 ? 117 AC8 25 DG B 8 ? DG B 21 . ? 1_555 ? 118 AC8 25 DC B 9 ? DC B 22 . ? 1_555 ? 119 AC8 25 DC B 10 ? DC B 23 . ? 1_555 ? 120 AC8 25 DG B 11 ? DG B 24 . ? 1_555 ? 121 AC8 25 ERI J . ? ERI B 101 . ? 1_555 ? 122 AC8 25 ARI N . ? ARI B 105 . ? 1_555 ? 123 AC8 25 CO P . ? CO B 107 . ? 1_555 ? 124 AC8 25 HOH S . ? HOH B 204 . ? 1_555 ? 125 AC8 25 HOH S . ? HOH B 207 . ? 1_555 ? 126 AC8 25 HOH S . ? HOH B 217 . ? 1_555 ? 127 AC8 25 HOH S . ? HOH B 218 . ? 1_555 ? 128 AC9 8 DG A 11 ? DG A 11 . ? 1_555 ? 129 AC9 8 DG B 5 ? DG B 18 . ? 1_555 ? 130 AC9 8 DC B 6 ? DC B 19 . ? 1_555 ? 131 AC9 8 CDR K . ? CDR B 102 . ? 1_555 ? 132 AC9 8 ARI N . ? ARI B 105 . ? 1_555 ? 133 AC9 8 CPH O . ? CPH B 106 . ? 1_555 ? 134 AC9 8 HOH S . ? HOH B 202 . ? 1_555 ? 135 AC9 8 HOH S . ? HOH B 207 . ? 1_555 ? 136 AD1 8 DC B 6 ? DC B 19 . ? 1_555 ? 137 AD1 8 ERI J . ? ERI B 101 . ? 1_555 ? 138 AD1 8 CDR L . ? CDR B 103 . ? 1_555 ? 139 AD1 8 CPH O . ? CPH B 106 . ? 1_555 ? 140 AD1 8 HOH S . ? HOH B 206 . ? 4_555 ? 141 AD1 8 HOH S . ? HOH B 206 . ? 1_555 ? 142 AD1 8 HOH S . ? HOH B 216 . ? 1_555 ? 143 AD1 8 HOH S . ? HOH B 248 . ? 1_555 ? 144 AD2 17 DC A 10 ? DC A 10 . ? 1_555 ? 145 AD2 17 CDR E . ? CDR A 103 . ? 1_555 ? 146 AD2 17 CPH H . ? CPH A 106 . ? 1_555 ? 147 AD2 17 HOH R . ? HOH A 204 . ? 1_555 ? 148 AD2 17 DG B 5 ? DG B 18 . ? 1_555 ? 149 AD2 17 DG B 8 ? DG B 21 . ? 1_555 ? 150 AD2 17 DC B 9 ? DC B 22 . ? 1_555 ? 151 AD2 17 DC B 10 ? DC B 23 . ? 1_555 ? 152 AD2 17 ERI J . ? ERI B 101 . ? 1_555 ? 153 AD2 17 CDR K . ? CDR B 102 . ? 1_555 ? 154 AD2 17 CDR L . ? CDR B 103 . ? 1_555 ? 155 AD2 17 1GL M . ? 1GL B 104 . ? 1_555 ? 156 AD2 17 CO P . ? CO B 107 . ? 1_555 ? 157 AD2 17 HOH S . ? HOH B 204 . ? 1_555 ? 158 AD2 17 HOH S . ? HOH B 216 . ? 1_555 ? 159 AD2 17 HOH S . ? HOH B 217 . ? 1_555 ? 160 AD2 17 HOH S . ? HOH B 248 . ? 1_555 ? # _atom_sites.entry_id 5ES0 _atom_sites.fract_transf_matrix[1][1] 0.020700 _atom_sites.fract_transf_matrix[1][2] 0.011951 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023902 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011957 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DA 12 12 12 DA A A . n A 1 13 DA 13 13 13 DA A A . n B 1 1 DT 1 14 14 DT T B . n B 1 2 DT 2 15 15 DT T B . n B 1 3 DC 3 16 16 DC C B . n B 1 4 DC 4 17 17 DC C B . n B 1 5 DG 5 18 18 DG G B . n B 1 6 DC 6 19 19 DC C B . n B 1 7 DC 7 20 20 DC C B . n B 1 8 DG 8 21 21 DG G B . n B 1 9 DC 9 22 22 DC C B . n B 1 10 DC 10 23 23 DC C B . n B 1 11 DG 11 24 24 DG G B . n B 1 12 DA 12 25 25 DA A B . n B 1 13 DA 13 26 26 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CDR 1 101 58 CDR CDR A . D 3 ERI 2 102 59 ERI ERI A . E 2 CDR 3 103 57 CDR CDR A . F 4 1GL 1 104 60 1GL BRI A . G 5 ARI 2 105 61 ARI ARI A . H 6 CPH 1 106 62 CPH CPH A . I 7 CO 1 107 601 CO CO A . J 3 ERI 1 101 65 ERI ERI B . K 2 CDR 2 102 63 CDR CDR B . L 2 CDR 3 103 64 CDR CDR B . M 4 1GL 1 104 54 1GL BRI B . N 5 ARI 2 105 55 ARI ARI B . O 6 CPH 1 106 56 CPH CPH B . P 7 CO 1 107 600 CO CO B . Q 7 CO 1 108 602 CO CO B . R 8 HOH 1 201 223 HOH HOH A . R 8 HOH 2 202 104 HOH HOH A . R 8 HOH 3 203 112 HOH HOH A . R 8 HOH 4 204 100 HOH HOH A . R 8 HOH 5 205 170 HOH HOH A . R 8 HOH 6 206 116 HOH HOH A . R 8 HOH 7 207 105 HOH HOH A . R 8 HOH 8 208 241 HOH HOH A . R 8 HOH 9 209 115 HOH HOH A . R 8 HOH 10 210 164 HOH HOH A . R 8 HOH 11 211 103 HOH HOH A . R 8 HOH 12 212 175 HOH HOH A . R 8 HOH 13 213 216 HOH HOH A . R 8 HOH 14 214 156 HOH HOH A . R 8 HOH 15 215 186 HOH HOH A . R 8 HOH 16 216 125 HOH HOH A . R 8 HOH 17 217 197 HOH HOH A . R 8 HOH 18 218 102 HOH HOH A . R 8 HOH 19 219 198 HOH HOH A . R 8 HOH 20 220 242 HOH HOH A . R 8 HOH 21 221 161 HOH HOH A . R 8 HOH 22 222 157 HOH HOH A . R 8 HOH 23 223 207 HOH HOH A . R 8 HOH 24 224 169 HOH HOH A . R 8 HOH 25 225 217 HOH HOH A . R 8 HOH 26 226 204 HOH HOH A . R 8 HOH 27 227 183 HOH HOH A . R 8 HOH 28 228 159 HOH HOH A . R 8 HOH 29 229 219 HOH HOH A . R 8 HOH 30 230 214 HOH HOH A . R 8 HOH 31 231 130 HOH HOH A . R 8 HOH 32 232 196 HOH HOH A . R 8 HOH 33 233 221 HOH HOH A . R 8 HOH 34 234 124 HOH HOH A . R 8 HOH 35 235 211 HOH HOH A . R 8 HOH 36 236 152 HOH HOH A . R 8 HOH 37 237 143 HOH HOH A . R 8 HOH 38 238 136 HOH HOH A . R 8 HOH 39 239 150 HOH HOH A . R 8 HOH 40 240 106 HOH HOH A . R 8 HOH 41 241 234 HOH HOH A . R 8 HOH 42 242 178 HOH HOH A . R 8 HOH 43 243 182 HOH HOH A . R 8 HOH 44 244 235 HOH HOH A . R 8 HOH 45 245 205 HOH HOH A . R 8 HOH 46 246 187 HOH HOH A . R 8 HOH 47 247 192 HOH HOH A . R 8 HOH 48 248 231 HOH HOH A . R 8 HOH 49 249 139 HOH HOH A . R 8 HOH 50 250 131 HOH HOH A . R 8 HOH 51 251 129 HOH HOH A . R 8 HOH 52 252 209 HOH HOH A . R 8 HOH 53 253 179 HOH HOH A . R 8 HOH 54 254 163 HOH HOH A . R 8 HOH 55 255 167 HOH HOH A . R 8 HOH 56 256 184 HOH HOH A . R 8 HOH 57 257 154 HOH HOH A . R 8 HOH 58 258 128 HOH HOH A . R 8 HOH 59 259 233 HOH HOH A . R 8 HOH 60 260 177 HOH HOH A . R 8 HOH 61 261 215 HOH HOH A . R 8 HOH 62 262 195 HOH HOH A . R 8 HOH 63 263 201 HOH HOH A . R 8 HOH 64 264 123 HOH HOH A . R 8 HOH 65 265 220 HOH HOH A . R 8 HOH 66 266 227 HOH HOH A . R 8 HOH 67 267 165 HOH HOH A . R 8 HOH 68 268 132 HOH HOH A . R 8 HOH 69 269 225 HOH HOH A . R 8 HOH 70 270 239 HOH HOH A . R 8 HOH 71 271 162 HOH HOH A . R 8 HOH 72 272 199 HOH HOH A . R 8 HOH 73 273 141 HOH HOH A . R 8 HOH 74 274 118 HOH HOH A . R 8 HOH 75 275 174 HOH HOH A . R 8 HOH 76 276 138 HOH HOH A . R 8 HOH 77 277 222 HOH HOH A . R 8 HOH 78 278 117 HOH HOH A . S 8 HOH 1 201 212 HOH HOH B . S 8 HOH 2 202 113 HOH HOH B . S 8 HOH 3 203 134 HOH HOH B . S 8 HOH 4 204 101 HOH HOH B . S 8 HOH 5 205 109 HOH HOH B . S 8 HOH 6 206 114 HOH HOH B . S 8 HOH 7 207 127 HOH HOH B . S 8 HOH 8 208 171 HOH HOH B . S 8 HOH 9 209 108 HOH HOH B . S 8 HOH 10 210 110 HOH HOH B . S 8 HOH 11 211 144 HOH HOH B . S 8 HOH 12 212 232 HOH HOH B . S 8 HOH 13 213 180 HOH HOH B . S 8 HOH 14 214 202 HOH HOH B . S 8 HOH 15 215 107 HOH HOH B . S 8 HOH 16 216 145 HOH HOH B . S 8 HOH 17 217 147 HOH HOH B . S 8 HOH 18 218 237 HOH HOH B . S 8 HOH 19 219 189 HOH HOH B . S 8 HOH 20 220 208 HOH HOH B . S 8 HOH 21 221 126 HOH HOH B . S 8 HOH 22 222 153 HOH HOH B . S 8 HOH 23 223 224 HOH HOH B . S 8 HOH 24 224 185 HOH HOH B . S 8 HOH 25 225 230 HOH HOH B . S 8 HOH 26 226 133 HOH HOH B . S 8 HOH 27 227 193 HOH HOH B . S 8 HOH 28 228 137 HOH HOH B . S 8 HOH 29 229 229 HOH HOH B . S 8 HOH 30 230 168 HOH HOH B . S 8 HOH 31 231 158 HOH HOH B . S 8 HOH 32 232 121 HOH HOH B . S 8 HOH 33 233 160 HOH HOH B . S 8 HOH 34 234 122 HOH HOH B . S 8 HOH 35 235 140 HOH HOH B . S 8 HOH 36 236 238 HOH HOH B . S 8 HOH 37 237 155 HOH HOH B . S 8 HOH 38 238 146 HOH HOH B . S 8 HOH 39 239 206 HOH HOH B . S 8 HOH 40 240 191 HOH HOH B . S 8 HOH 41 241 176 HOH HOH B . S 8 HOH 42 242 188 HOH HOH B . S 8 HOH 43 243 181 HOH HOH B . S 8 HOH 44 244 240 HOH HOH B . S 8 HOH 45 245 151 HOH HOH B . S 8 HOH 46 246 213 HOH HOH B . S 8 HOH 47 247 148 HOH HOH B . S 8 HOH 48 248 172 HOH HOH B . S 8 HOH 49 249 111 HOH HOH B . S 8 HOH 50 250 149 HOH HOH B . S 8 HOH 51 251 194 HOH HOH B . S 8 HOH 52 252 243 HOH HOH B . S 8 HOH 53 253 226 HOH HOH B . S 8 HOH 54 254 190 HOH HOH B . S 8 HOH 55 255 236 HOH HOH B . S 8 HOH 56 256 119 HOH HOH B . S 8 HOH 57 257 142 HOH HOH B . S 8 HOH 58 258 218 HOH HOH B . S 8 HOH 59 259 200 HOH HOH B . S 8 HOH 60 260 173 HOH HOH B . S 8 HOH 61 261 135 HOH HOH B . S 8 HOH 62 262 166 HOH HOH B . S 8 HOH 63 263 210 HOH HOH B . S 8 HOH 64 264 228 HOH HOH B . S 8 HOH 65 265 203 HOH HOH B . S 8 HOH 66 266 120 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1160 ? 1 MORE -22 ? 1 'SSA (A^2)' 5300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 220 ? R HOH . 2 1 A HOH 273 ? R HOH . 3 1 A HOH 275 ? R HOH . 4 1 B HOH 235 ? S HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 202 ? 1_555 88.6 ? 2 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 207 ? 1_555 88.0 ? 3 O ? R HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 207 ? 1_555 160.4 ? 4 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 211 ? 1_555 86.9 ? 5 O ? R HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 211 ? 1_555 117.0 ? 6 O ? R HOH . ? A HOH 207 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 211 ? 1_555 82.0 ? 7 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 218 ? 1_555 87.3 ? 8 O ? R HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 218 ? 1_555 68.8 ? 9 O ? R HOH . ? A HOH 207 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 218 ? 1_555 91.8 ? 10 O ? R HOH . ? A HOH 211 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 218 ? 1_555 171.7 ? 11 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 240 ? 1_555 157.9 ? 12 O ? R HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 240 ? 1_555 78.2 ? 13 O ? R HOH . ? A HOH 207 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 240 ? 1_555 98.5 ? 14 O ? R HOH . ? A HOH 211 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 240 ? 1_555 114.8 ? 15 O ? R HOH . ? A HOH 218 ? 1_555 CO ? I CO . ? A CO 107 ? 1_555 O ? R HOH . ? A HOH 240 ? 1_555 71.5 ? 16 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 249 ? 1_555 176.3 ? 17 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 209 ? 1_555 87.7 ? 18 O ? S HOH . ? B HOH 249 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 209 ? 1_555 95.5 ? 19 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 210 ? 1_555 87.5 ? 20 O ? S HOH . ? B HOH 249 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 210 ? 1_555 91.2 ? 21 O ? S HOH . ? B HOH 209 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 210 ? 1_555 82.4 ? 22 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 215 ? 1_555 88.4 ? 23 O ? S HOH . ? B HOH 249 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 215 ? 1_555 88.3 ? 24 O ? S HOH . ? B HOH 209 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 215 ? 1_555 175.8 ? 25 O ? S HOH . ? B HOH 210 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 215 ? 1_555 95.8 ? 26 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 205 ? 1_555 94.5 ? 27 O ? S HOH . ? B HOH 249 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 205 ? 1_555 85.9 ? 28 O ? S HOH . ? B HOH 209 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 205 ? 1_555 112.1 ? 29 O ? S HOH . ? B HOH 210 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 205 ? 1_555 165.4 ? 30 O ? S HOH . ? B HOH 215 ? 1_555 CO ? Q CO . ? B CO 108 ? 1_555 O ? S HOH . ? B HOH 205 ? 1_555 69.8 ? 31 O1 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O9 ? H CPH . ? A CPH 106 ? 1_555 84.3 ? 32 O1 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O1 ? O CPH . ? B CPH 106 ? 1_555 82.8 ? 33 O9 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O1 ? O CPH . ? B CPH 106 ? 1_555 90.8 ? 34 O1 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O9 ? O CPH . ? B CPH 106 ? 1_555 93.8 ? 35 O9 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O9 ? O CPH . ? B CPH 106 ? 1_555 176.2 ? 36 O1 ? O CPH . ? B CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O9 ? O CPH . ? B CPH 106 ? 1_555 85.7 ? 37 O1 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? S HOH . ? B HOH 204 ? 1_555 166.2 ? 38 O9 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? S HOH . ? B HOH 204 ? 1_555 83.2 ? 39 O1 ? O CPH . ? B CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? S HOH . ? B HOH 204 ? 1_555 91.7 ? 40 O9 ? O CPH . ? B CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? S HOH . ? B HOH 204 ? 1_555 98.4 ? 41 O1 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? R HOH . ? A HOH 204 ? 1_555 92.1 ? 42 O9 ? H CPH . ? A CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? R HOH . ? A HOH 204 ? 1_555 103.3 ? 43 O1 ? O CPH . ? B CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? R HOH . ? A HOH 204 ? 1_555 164.6 ? 44 O9 ? O CPH . ? B CPH 106 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? R HOH . ? A HOH 204 ? 1_555 80.0 ? 45 O ? S HOH . ? B HOH 204 ? 1_555 CO ? P CO . ? B CO 107 ? 1_555 O ? R HOH . ? A HOH 204 ? 1_555 96.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-16 2 'Structure model' 1 1 2018-05-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 B DT 15 ? ? O B HOH 201 ? ? 2.07 2 1 OGL A CDR 103 ? ? C3 B CPH 106 ? ? 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DT 1 ? ? C2 A DT 1 ? ? 1.432 1.376 0.056 0.008 N 2 1 N3 A DT 1 ? ? C4 A DT 1 ? ? 1.330 1.382 -0.052 0.008 N 3 1 C5 A DT 1 ? ? C6 A DT 1 ? ? 1.393 1.339 0.054 0.007 N 4 1 N1 A DT 2 ? ? C2 A DT 2 ? ? 1.425 1.376 0.049 0.008 N 5 1 N3 A DT 2 ? ? C4 A DT 2 ? ? 1.325 1.382 -0.057 0.008 N 6 1 N1 B DT 14 ? ? C2 B DT 14 ? ? 1.436 1.376 0.060 0.008 N 7 1 C5 B DT 14 ? ? C6 B DT 14 ? ? 1.395 1.339 0.056 0.007 N 8 1 C2 B DT 14 ? ? O2 B DT 14 ? ? 1.273 1.220 0.053 0.008 N 9 1 C5 B DT 15 ? ? C6 B DT 15 ? ? 1.382 1.339 0.043 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 115.94 108.30 7.64 0.30 N 2 1 C6 A DT 1 ? ? N1 A DT 1 ? ? C2 A DT 1 ? ? 117.83 121.30 -3.47 0.50 N 3 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 123.10 114.60 8.50 0.60 N 4 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 121.03 127.20 -6.17 0.60 N 5 1 N3 A DT 1 ? ? C2 A DT 1 ? ? O2 A DT 1 ? ? 117.38 122.30 -4.92 0.60 N 6 1 N1 A DT 2 ? ? C2 A DT 2 ? ? N3 A DT 2 ? ? 121.42 114.60 6.82 0.60 N 7 1 C2 A DT 2 ? ? N3 A DT 2 ? ? C4 A DT 2 ? ? 120.64 127.20 -6.56 0.60 N 8 1 N3 A DT 2 ? ? C4 A DT 2 ? ? C5 A DT 2 ? ? 119.94 115.20 4.74 0.60 N 9 1 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 117.69 122.30 -4.61 0.60 N 10 1 C4 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 123.86 119.00 4.86 0.60 N 11 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.52 122.90 -4.38 0.60 N 12 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 115.18 108.30 6.88 0.30 N 13 1 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 119.93 114.60 5.33 0.60 N 14 1 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 121.81 127.20 -5.39 0.60 N 15 1 N3 B DT 14 ? ? C4 B DT 14 ? ? C5 B DT 14 ? ? 119.31 115.20 4.11 0.60 N 16 1 C5 B DT 14 ? ? C6 B DT 14 ? ? N1 B DT 14 ? ? 119.69 123.70 -4.01 0.60 N 17 1 N3 B DT 14 ? ? C2 B DT 14 ? ? O2 B DT 14 ? ? 117.45 122.30 -4.85 0.60 N 18 1 C5 B DT 14 ? ? C4 B DT 14 ? ? O4 B DT 14 ? ? 119.77 124.90 -5.13 0.70 N 19 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 118.85 108.30 10.55 0.30 N 20 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 121.72 114.60 7.12 0.60 N 21 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 121.35 127.20 -5.85 0.60 N 22 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 118.95 115.20 3.75 0.60 N 23 1 N1 B DT 15 ? ? C2 B DT 15 ? ? O2 B DT 15 ? ? 117.79 123.10 -5.31 0.80 N 24 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 118.92 124.90 -5.98 0.70 N 25 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 99.77 105.70 -5.93 0.90 N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 269 ? 6.16 . 2 1 O ? A HOH 270 ? 6.26 . 3 1 O ? A HOH 271 ? 6.30 . 4 1 O ? A HOH 272 ? 7.04 . 5 1 O ? A HOH 273 ? 7.49 . 6 1 O ? A HOH 274 ? . 8.00 7 1 O ? A HOH 275 ? . 8.22 8 1 O ? A HOH 276 ? 9.22 . 9 1 O ? A HOH 277 ? 9.53 . 10 1 O ? A HOH 278 ? 9.92 . 11 1 O ? B HOH 265 ? 6.47 . 12 1 O ? B HOH 266 ? 9.11 . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5ES0 'double helix' 5ES0 'a-form double helix' 5ES0 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 13 1_555 -1.302 4.094 0.597 -16.065 17.601 -74.419 1 A_DT1:DA26_B A 1 ? B 26 ? 23 3 1 A DT 2 1_555 B DA 12 1_555 -0.492 -0.054 -0.378 -0.709 -6.942 -3.918 2 A_DT2:DA25_B A 2 ? B 25 ? 20 1 1 A DC 4 1_555 B DG 11 1_555 -0.119 -0.041 -0.282 8.136 -11.226 -1.233 3 A_DC4:DG24_B A 4 ? B 24 ? 19 1 1 A DG 5 1_555 B DC 10 1_555 -0.157 -0.152 -0.158 1.324 -12.948 -0.357 4 A_DG5:DC23_B A 5 ? B 23 ? 19 1 1 A DG 8 1_555 B DC 9 1_555 -0.241 -0.104 0.231 3.009 -10.592 -1.382 5 A_DG8:DC22_B A 8 ? B 22 ? 19 1 1 A DC 9 1_555 B DG 8 1_555 0.230 -0.113 0.204 -2.938 -8.430 -0.896 6 A_DC9:DG21_B A 9 ? B 21 ? 19 1 1 A DC 10 1_555 B DG 5 1_555 0.078 -0.129 -0.168 0.583 -13.556 -0.077 7 A_DC10:DG18_B A 10 ? B 18 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 0.248 0.001 -0.172 -4.255 -11.510 -0.120 8 A_DG11:DC17_B A 11 ? B 17 ? 19 1 1 A DA 12 1_555 B DT 2 1_555 1.313 -0.095 -0.487 -3.065 -2.786 -9.062 9 A_DA12:DT15_B A 12 ? B 15 ? 20 1 1 A DA 13 1_555 B DT 1 1_555 1.803 -3.678 -0.310 12.584 -11.349 84.763 10 A_DA13:DT14_B A 13 ? B 14 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 13 1_555 A DT 2 1_555 B DA 12 1_555 -0.696 3.273 3.194 5.609 -0.694 -8.013 -17.687 7.758 3.241 4.327 34.973 -9.803 1 AA_DT1DT2:DA25DA26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DT 2 1_555 B DA 12 1_555 A DC 4 1_555 B DG 11 1_555 0.137 0.397 3.149 -0.046 -2.366 35.288 0.987 -0.232 3.117 -3.897 0.075 35.365 2 AA_DT2DC4:DG24DA25_BB A 2 ? B 25 ? A 4 ? B 24 ? 1 A DC 4 1_555 B DG 11 1_555 A DG 5 1_555 B DC 10 1_555 0.639 0.180 3.598 -0.989 9.026 37.374 -0.969 -1.107 3.528 13.836 1.516 38.423 3 AA_DC4DG5:DC23DG24_BB A 4 ? B 24 ? A 5 ? B 23 ? 1 A DG 5 1_555 B DC 10 1_555 A DG 8 1_555 B DC 9 1_555 1.930 -2.042 3.200 -2.197 8.936 19.365 -8.443 -5.917 1.856 24.832 6.105 21.421 4 AA_DG5DG8:DC22DC23_BB A 5 ? B 23 ? A 8 ? B 22 ? 1 A DG 8 1_555 B DC 9 1_555 A DC 9 1_555 B DG 8 1_555 -0.025 -2.237 3.518 0.136 -3.409 35.512 -3.105 0.063 3.709 -5.573 -0.222 35.670 5 AA_DG8DC9:DG21DC22_BB A 8 ? B 22 ? A 9 ? B 21 ? 1 A DC 9 1_555 B DG 8 1_555 A DC 10 1_555 B DG 5 1_555 -1.921 -2.066 3.160 2.381 10.173 18.930 -8.670 5.865 1.600 28.308 -6.625 21.598 6 AA_DC9DC10:DG18DG21_BB A 9 ? B 21 ? A 10 ? B 18 ? 1 A DC 10 1_555 B DG 5 1_555 A DG 11 1_555 B DC 4 1_555 -0.661 0.214 3.564 -0.136 5.415 37.887 -0.419 0.989 3.562 8.288 0.208 38.258 7 AA_DC10DG11:DC17DG18_BB A 10 ? B 18 ? A 11 ? B 17 ? 1 A DG 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 2 1_555 -0.366 0.356 3.378 2.059 -0.001 38.698 0.537 0.811 3.354 -0.002 -3.104 38.750 8 AA_DG11DA12:DT15DC17_BB A 11 ? B 17 ? A 12 ? B 15 ? 1 A DA 12 1_555 B DT 2 1_555 A DA 13 1_555 B DT 1 1_555 2.810 2.806 -2.307 175.440 -16.039 58.446 1.371 -1.760 1.092 -8.108 -88.695 176.659 9 AA_DA12DA13:DT14DT15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2,3-DIDEOXYFUCOSE CDR 3 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE ERI 4 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE 1GL 5 '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' ARI 6 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 7 'COBALT (II) ION' CO 8 water HOH #