HEADER LIGASE 16-NOV-15 5ES7 TITLE CRYSTAL STRUCTURE OF THE F-A DOMAINS OF THE LGRA INITIATION MODULE TITLE 2 SOAKED WITH FON, AMPCPP, AND VALINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINEAR GRAMICIDIN SYNTHETASE SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-684; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS PARABREVIS; SOURCE 3 ORGANISM_TAXID: 54914; SOURCE 4 GENE: LGRA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NRPS, FORMYLATION DOMAIN, ADENYLATION DOMAIN, INITIATION MODULE, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.REIMER,M.N.ALOISE,T.M.SCHMEING REVDAT 4 27-SEP-23 5ES7 1 REMARK REVDAT 3 08-JAN-20 5ES7 1 JRNL REMARK REVDAT 2 27-JAN-16 5ES7 1 JRNL REVDAT 1 20-JAN-16 5ES7 0 JRNL AUTH J.M.REIMER,M.N.ALOISE,P.M.HARRISON,T.M.SCHMEING JRNL TITL SYNTHETIC CYCLE OF THE INITIATION MODULE OF A FORMYLATING JRNL TITL 2 NONRIBOSOMAL PEPTIDE SYNTHETASE. JRNL REF NATURE V. 529 239 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 26762462 JRNL DOI 10.1038/NATURE16503 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 42719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9901 - 6.9129 1.00 3038 160 0.1981 0.2373 REMARK 3 2 6.9129 - 5.4892 1.00 2912 154 0.2012 0.2383 REMARK 3 3 5.4892 - 4.7960 1.00 2866 151 0.1765 0.1828 REMARK 3 4 4.7960 - 4.3578 1.00 2827 152 0.1828 0.2016 REMARK 3 5 4.3578 - 4.0456 0.99 2828 148 0.1903 0.2203 REMARK 3 6 4.0456 - 3.8071 1.00 2813 142 0.2134 0.2641 REMARK 3 7 3.8071 - 3.6165 1.00 2823 147 0.2531 0.2649 REMARK 3 8 3.6165 - 3.4591 1.00 2793 147 0.2658 0.2617 REMARK 3 9 3.4591 - 3.3260 1.00 2808 145 0.2911 0.3752 REMARK 3 10 3.3260 - 3.2113 0.99 2728 151 0.3035 0.3695 REMARK 3 11 3.2113 - 3.1109 0.96 2717 142 0.3376 0.4263 REMARK 3 12 3.1109 - 3.0220 0.92 2571 136 0.3611 0.3993 REMARK 3 13 3.0220 - 2.9424 0.87 2417 125 0.3823 0.4056 REMARK 3 14 2.9424 - 2.8706 0.82 2281 130 0.3826 0.4644 REMARK 3 15 2.8706 - 2.8054 0.77 2154 113 0.3988 0.4496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4798 REMARK 3 ANGLE : 0.677 6514 REMARK 3 CHIRALITY : 0.045 714 REMARK 3 PLANARITY : 0.004 845 REMARK 3 DIHEDRAL : 14.222 2840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ES7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ES6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M NA-FORMATE, 0.1 M NA-ACETATE PH REMARK 280 5.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.79050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 80.47150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 80.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.39525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 80.47150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 80.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.18575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 80.47150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.47150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.39525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 80.47150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.47150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.18575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.79050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 353 REMARK 465 SER A 354 REMARK 465 THR A 355 REMARK 465 GLY A 356 REMARK 465 LEU A 357 REMARK 465 ASN A 586 REMARK 465 LEU A 587 REMARK 465 VAL A 588 REMARK 465 LYS A 589 REMARK 465 ILE A 590 REMARK 465 ARG A 591 REMARK 465 GLY A 592 REMARK 465 TYR A 593 REMARK 465 ARG A 594 REMARK 465 ILE A 595 REMARK 465 GLU A 596 REMARK 465 PRO A 597 REMARK 465 GLY A 598 REMARK 465 GLU A 599 REMARK 465 ILE A 600 REMARK 465 GLU A 601 REMARK 465 PRO A 602 REMARK 465 PHE A 603 REMARK 465 LEU A 604 REMARK 465 MET A 605 REMARK 465 ASN A 606 REMARK 465 HIS A 607 REMARK 465 PRO A 608 REMARK 465 LEU A 609 REMARK 465 ILE A 610 REMARK 465 GLU A 611 REMARK 465 LEU A 612 REMARK 465 THR A 613 REMARK 465 THR A 614 REMARK 465 VAL A 615 REMARK 465 LEU A 616 REMARK 465 ALA A 617 REMARK 465 LYS A 618 REMARK 465 GLU A 619 REMARK 465 GLN A 620 REMARK 465 ALA A 621 REMARK 465 ASP A 622 REMARK 465 GLY A 623 REMARK 465 ARG A 624 REMARK 465 LYS A 625 REMARK 465 TYR A 626 REMARK 465 LEU A 627 REMARK 465 VAL A 628 REMARK 465 GLY A 629 REMARK 465 TYR A 630 REMARK 465 TYR A 631 REMARK 465 VAL A 632 REMARK 465 ALA A 633 REMARK 465 PRO A 634 REMARK 465 GLU A 635 REMARK 465 GLU A 636 REMARK 465 ILE A 637 REMARK 465 PRO A 638 REMARK 465 HIS A 639 REMARK 465 GLY A 640 REMARK 465 GLU A 641 REMARK 465 LEU A 642 REMARK 465 ARG A 643 REMARK 465 GLU A 644 REMARK 465 TRP A 645 REMARK 465 LEU A 646 REMARK 465 GLY A 647 REMARK 465 ASN A 648 REMARK 465 ASP A 649 REMARK 465 LEU A 650 REMARK 465 PRO A 651 REMARK 465 ASP A 652 REMARK 465 TYR A 653 REMARK 465 MET A 654 REMARK 465 ILE A 655 REMARK 465 PRO A 656 REMARK 465 THR A 657 REMARK 465 TYR A 658 REMARK 465 PHE A 659 REMARK 465 VAL A 660 REMARK 465 HIS A 661 REMARK 465 MET A 662 REMARK 465 LYS A 663 REMARK 465 ALA A 664 REMARK 465 PHE A 665 REMARK 465 PRO A 666 REMARK 465 LEU A 667 REMARK 465 THR A 668 REMARK 465 ALA A 669 REMARK 465 ASN A 670 REMARK 465 GLY A 671 REMARK 465 LYS A 672 REMARK 465 VAL A 673 REMARK 465 ASP A 674 REMARK 465 ARG A 675 REMARK 465 ARG A 676 REMARK 465 ALA A 677 REMARK 465 LEU A 678 REMARK 465 PRO A 679 REMARK 465 ASP A 680 REMARK 465 VAL A 681 REMARK 465 GLN A 682 REMARK 465 ALA A 683 REMARK 465 ASP A 684 REMARK 465 ALA A 685 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 499 O HOH A 802 1.43 REMARK 500 HZ1 LYS A 262 O SER A 391 1.49 REMARK 500 HZ3 LYS A 552 O ARG A 565 1.57 REMARK 500 O ASP A 108 HE22 GLN A 158 1.59 REMARK 500 O HOH A 836 O HOH A 839 1.99 REMARK 500 OE1 GLU A 22 O HOH A 801 2.05 REMARK 500 OH TYR A 499 O HOH A 802 2.15 REMARK 500 O LYS A 199 NH2 ARG A 510 2.16 REMARK 500 NH1 ARG A 510 OE1 GLU A 536 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 60 H GLY A 197 7645 1.40 REMARK 500 NH2 ARG A 3 OD2 ASP A 343 7645 1.97 REMARK 500 O HOH A 872 O HOH A 874 7645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 193 159.98 -44.44 REMARK 500 ARG A 225 -117.80 67.50 REMARK 500 ASP A 253 -0.12 74.37 REMARK 500 SER A 438 170.93 175.85 REMARK 500 THR A 487 90.27 70.52 REMARK 500 ILE A 488 -121.37 58.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 APC A 703 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FON A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VAL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ES5 RELATED DB: PDB REMARK 900 5ES5 CONTAINS A LONGER CONSTRUCT OF THE PROTEIN, LGRA, SHOWING THE REMARK 900 FULL ADENYLATION DOMAIN WITH THE PEPTIDYL CARRIER PROTEIN BEING REMARK 900 DISORDERED. REMARK 900 RELATED ID: 5ES6 RELATED DB: PDB REMARK 900 5ES6 CONTAINS THE PROTEIN WITHOUT SUBSTRATES. REMARK 900 RELATED ID: 5ES8 RELATED DB: PDB REMARK 900 5ES8 CONTAINS A LONGER CONSTRUCT OF THE PROTEIN, LGRA, SHOWING THE REMARK 900 PEPTIDYL CARRIER PROTEIN IN THE THIOLATION STATE. REMARK 900 RELATED ID: 5ES9 RELATED DB: PDB REMARK 900 5ES9 CONTAINS A LONGER CONSTRUCT OF THE PROTEIN, LGRA, SHOWING THE REMARK 900 PEPTIDYL CARRIER PROTEIN IN THE FORMYLATION STATE. DBREF 5ES7 A 3 685 UNP Q70LM7 LGRA_BREPA 2 684 SEQADV 5ES7 MET A 1 UNP Q70LM7 INITIATING METHIONINE SEQADV 5ES7 GLY A 2 UNP Q70LM7 EXPRESSION TAG SEQRES 1 A 685 MET GLY ARG ILE LEU PHE LEU THR THR PHE MET SER LYS SEQRES 2 A 685 GLY ASN LYS VAL VAL ARG TYR LEU GLU SER LEU HIS HIS SEQRES 3 A 685 GLU VAL VAL ILE CYS GLN GLU LYS VAL HIS ALA GLN SER SEQRES 4 A 685 ALA ASN LEU GLN GLU ILE ASP TRP ILE VAL SER TYR ALA SEQRES 5 A 685 TYR GLY TYR ILE LEU ASP LYS GLU ILE VAL SER ARG PHE SEQRES 6 A 685 ARG GLY ARG ILE ILE ASN LEU HIS PRO SER LEU LEU PRO SEQRES 7 A 685 TRP ASN LYS GLY ARG ASP PRO VAL PHE TRP SER VAL TRP SEQRES 8 A 685 ASP GLU THR PRO LYS GLY VAL THR ILE HIS LEU ILE ASP SEQRES 9 A 685 GLU HIS VAL ASP THR GLY ASP ILE LEU VAL GLN GLU GLU SEQRES 10 A 685 ILE ALA PHE ALA ASP GLU ASP THR LEU LEU ASP CYS TYR SEQRES 11 A 685 ASN LYS ALA ASN GLN ALA ILE GLU GLU LEU PHE ILE ARG SEQRES 12 A 685 GLU TRP GLU ASN ILE VAL HIS GLY ARG ILE ALA PRO TYR SEQRES 13 A 685 ARG GLN THR ALA GLY GLY THR LEU HIS PHE LYS ALA ASP SEQRES 14 A 685 ARG ASP PHE TYR LYS ASN LEU ASN MET THR THR VAL ARG SEQRES 15 A 685 GLU LEU LEU ALA LEU LYS ARG LEU CYS ALA GLU PRO LYS SEQRES 16 A 685 ARG GLY GLU LYS PRO ILE ASP LYS THR PHE HIS GLN LEU SEQRES 17 A 685 PHE GLU GLN GLN VAL GLU MET THR PRO ASP HIS VAL ALA SEQRES 18 A 685 VAL VAL ASP ARG GLY GLN SER LEU THR TYR LYS GLN LEU SEQRES 19 A 685 ASN GLU ARG ALA ASN GLN LEU ALA HIS HIS LEU ARG GLY SEQRES 20 A 685 LYS GLY VAL LYS PRO ASP ASP GLN VAL ALA ILE MET LEU SEQRES 21 A 685 ASP LYS SER LEU ASP MET ILE VAL SER ILE LEU ALA VAL SEQRES 22 A 685 MET LYS ALA GLY GLY ALA TYR VAL PRO ILE ASP PRO ASP SEQRES 23 A 685 TYR PRO GLY GLU ARG ILE ALA TYR MET LEU ALA ASP SER SEQRES 24 A 685 SER ALA ALA ILE LEU LEU THR ASN ALA LEU HIS GLU GLU SEQRES 25 A 685 LYS ALA ASN GLY ALA CYS ASP ILE ILE ASP VAL HIS ASP SEQRES 26 A 685 PRO ASP SER TYR SER GLU ASN THR ASN ASN LEU PRO HIS SEQRES 27 A 685 VAL ASN ARG PRO ASP ASP LEU VAL TYR VAL MET TYR THR SEQRES 28 A 685 SER GLY SER THR GLY LEU ALA LYS GLY VAL MET ILE GLU SEQRES 29 A 685 HIS HIS ASN LEU VAL ASN PHE CYS GLU TRP TYR ARG PRO SEQRES 30 A 685 TYR PHE GLY VAL THR PRO ALA ASP LYS ALA LEU VAL TYR SEQRES 31 A 685 SER SER PHE SER PHE ASP GLY SER ALA LEU ASP ILE PHE SEQRES 32 A 685 THR HIS LEU LEU ALA GLY ALA ALA LEU HIS ILE VAL PRO SEQRES 33 A 685 SER GLU ARG LYS TYR ASP LEU ASP ALA LEU ASN ASP TYR SEQRES 34 A 685 CYS ASN GLN GLU GLY ILE THR ILE SER TYR LEU PRO THR SEQRES 35 A 685 GLY ALA ALA GLU GLN PHE MET GLN MET ASP ASN GLN SER SEQRES 36 A 685 PHE ARG VAL VAL ILE THR GLY GLY ASP VAL LEU LYS LYS SEQRES 37 A 685 ILE GLU ARG ASN GLY THR TYR LYS LEU TYR ASN GLY TYR SEQRES 38 A 685 GLY PRO THR GLU CYS THR ILE MET VAL THR MET PHE GLU SEQRES 39 A 685 VAL ASP LYS PRO TYR ALA ASN ILE PRO ILE GLY LYS PRO SEQRES 40 A 685 ILE ASP ARG THR ARG ILE LEU ILE LEU ASP GLU ALA LEU SEQRES 41 A 685 ALA LEU GLN PRO ILE GLY VAL ALA GLY GLU LEU PHE ILE SEQRES 42 A 685 VAL GLY GLU GLY LEU GLY ARG GLY TYR LEU ASN ARG PRO SEQRES 43 A 685 GLU LEU THR ALA GLU LYS PHE ILE VAL HIS PRO GLN THR SEQRES 44 A 685 GLY GLU ARG MET TYR ARG THR GLY ASP ARG ALA ARG PHE SEQRES 45 A 685 LEU PRO ASP GLY ASN ILE GLU PHE LEU GLY ARG LEU ASP SEQRES 46 A 685 ASN LEU VAL LYS ILE ARG GLY TYR ARG ILE GLU PRO GLY SEQRES 47 A 685 GLU ILE GLU PRO PHE LEU MET ASN HIS PRO LEU ILE GLU SEQRES 48 A 685 LEU THR THR VAL LEU ALA LYS GLU GLN ALA ASP GLY ARG SEQRES 49 A 685 LYS TYR LEU VAL GLY TYR TYR VAL ALA PRO GLU GLU ILE SEQRES 50 A 685 PRO HIS GLY GLU LEU ARG GLU TRP LEU GLY ASN ASP LEU SEQRES 51 A 685 PRO ASP TYR MET ILE PRO THR TYR PHE VAL HIS MET LYS SEQRES 52 A 685 ALA PHE PRO LEU THR ALA ASN GLY LYS VAL ASP ARG ARG SEQRES 53 A 685 ALA LEU PRO ASP VAL GLN ALA ASP ALA HET FON A 701 55 HET VAL A 702 19 HET APC A 703 37 HETNAM FON N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8- HETNAM 2 FON HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}- HETNAM 3 FON L-GLUTAMIC ACID HETNAM VAL VALINE HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN FON [6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE; 6R-FOLINIC ACID HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 2 FON C20 H23 N7 O7 FORMUL 3 VAL C5 H11 N O2 FORMUL 4 APC C11 H18 N5 O12 P3 FORMUL 5 HOH *78(H2 O) HELIX 1 AA1 ASN A 15 LEU A 24 1 10 HELIX 2 AA2 SER A 39 GLN A 43 5 5 HELIX 3 AA3 ASP A 58 PHE A 65 1 8 HELIX 4 AA4 ASP A 84 ASP A 92 1 9 HELIX 5 AA5 THR A 125 HIS A 150 1 26 HELIX 6 AA6 PHE A 166 ASN A 177 5 12 HELIX 7 AA7 THR A 180 ALA A 192 1 13 HELIX 8 AA8 THR A 204 THR A 216 1 13 HELIX 9 AA9 TYR A 231 LYS A 248 1 18 HELIX 10 AB1 SER A 263 GLY A 277 1 15 HELIX 11 AB2 PRO A 288 SER A 299 1 12 HELIX 12 AB3 HIS A 310 ASN A 315 5 6 HELIX 13 AB4 ASP A 325 TYR A 329 5 5 HELIX 14 AB5 HIS A 365 GLY A 380 1 16 HELIX 15 AB6 PHE A 395 LEU A 407 1 13 HELIX 16 AB7 PRO A 416 TYR A 421 1 6 HELIX 17 AB8 ASP A 422 GLY A 434 1 13 HELIX 18 AB9 PRO A 441 MET A 451 1 11 HELIX 19 AC1 PRO A 483 THR A 487 5 5 HELIX 20 AC2 ARG A 545 LYS A 552 1 8 SHEET 1 AA1 6 GLU A 27 CYS A 31 0 SHEET 2 AA1 6 ARG A 3 LEU A 7 1 N PHE A 6 O VAL A 29 SHEET 3 AA1 6 TRP A 47 TYR A 51 1 O TYR A 51 N LEU A 7 SHEET 4 AA1 6 ILE A 69 HIS A 73 1 O ILE A 70 N ILE A 48 SHEET 5 AA1 6 GLY A 97 LEU A 102 -1 O THR A 99 N HIS A 73 SHEET 6 AA1 6 ILE A 112 GLU A 117 -1 O LEU A 113 N ILE A 100 SHEET 1 AA2 2 LYS A 81 GLY A 82 0 SHEET 2 AA2 2 LEU A 164 HIS A 165 1 O HIS A 165 N LYS A 81 SHEET 1 AA3 4 GLN A 227 THR A 230 0 SHEET 2 AA3 4 VAL A 220 ASP A 224 -1 N ALA A 221 O LEU A 229 SHEET 3 AA3 4 ALA A 411 ILE A 414 1 O LEU A 412 N ALA A 221 SHEET 4 AA3 4 LYS A 386 VAL A 389 1 N VAL A 389 O HIS A 413 SHEET 1 AA4 4 ALA A 279 PRO A 282 0 SHEET 2 AA4 4 GLN A 255 MET A 259 1 N VAL A 256 O ALA A 279 SHEET 3 AA4 4 ILE A 303 THR A 306 1 O LEU A 305 N ALA A 257 SHEET 4 AA4 4 ASP A 319 ASP A 322 1 O ILE A 321 N LEU A 304 SHEET 1 AA5 3 LEU A 345 TYR A 350 0 SHEET 2 AA5 3 GLY A 360 GLU A 364 -1 O VAL A 361 N MET A 349 SHEET 3 AA5 3 GLY A 541 TYR A 542 -1 O GLY A 541 N MET A 362 SHEET 1 AA6 4 VAL A 458 THR A 461 0 SHEET 2 AA6 4 LYS A 476 TYR A 481 1 O TYR A 478 N THR A 461 SHEET 3 AA6 4 THR A 491 GLU A 494 -1 O PHE A 493 N ASN A 479 SHEET 4 AA6 4 LYS A 506 PRO A 507 -1 O LYS A 506 N MET A 492 SHEET 1 AA7 4 THR A 511 LEU A 516 0 SHEET 2 AA7 4 GLY A 529 GLY A 535 -1 O VAL A 534 N ARG A 512 SHEET 3 AA7 4 ARG A 562 PHE A 572 -1 O TYR A 564 N ILE A 533 SHEET 4 AA7 4 PHE A 553 VAL A 555 -1 N ILE A 554 O MET A 563 SHEET 1 AA8 4 THR A 511 LEU A 516 0 SHEET 2 AA8 4 GLY A 529 GLY A 535 -1 O VAL A 534 N ARG A 512 SHEET 3 AA8 4 ARG A 562 PHE A 572 -1 O TYR A 564 N ILE A 533 SHEET 4 AA8 4 ILE A 578 ARG A 583 -1 O GLY A 582 N ARG A 569 CISPEP 1 LEU A 77 PRO A 78 0 8.11 SITE 1 AC1 15 TYR A 53 TYR A 55 ILE A 56 LEU A 57 SITE 2 AC1 15 ASN A 71 ARG A 83 ILE A 103 ASP A 104 SITE 3 AC1 15 HIS A 106 VAL A 107 ASP A 108 PHE A 166 SITE 4 AC1 15 LYS A 167 ASP A 169 HOH A 862 SITE 1 AC2 5 ASP A 396 TYR A 439 GLY A 482 ILE A 488 SITE 2 AC2 5 APC A 703 SITE 1 AC3 9 GLY A 463 ASP A 464 VAL A 465 GLY A 480 SITE 2 AC3 9 TYR A 481 ILE A 504 ASP A 568 PHE A 580 SITE 3 AC3 9 VAL A 702 CRYST1 160.943 160.943 137.581 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007268 0.00000