HEADER DNA 17-NOV-15 5ET2 TITLE LAMBDA-RU(TAP)2(DPPZ)]2+ BOUND TO D(TTGGCGCCAA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*(THM)P*TP*GP*GP*CP*GP*CP*CP*AP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RUTHENIUM INTERCALATION DNA PHOTOACTIVE, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.P.HALL,C.J.CARDIN REVDAT 5 08-MAY-24 5ET2 1 LINK REVDAT 4 30-AUG-17 5ET2 1 REMARK REVDAT 3 09-AUG-17 5ET2 1 JRNL REVDAT 2 19-JUL-17 5ET2 1 REVDAT 1 23-NOV-16 5ET2 0 JRNL AUTH P.M.KEANE,J.P.HALL,F.E.POYNTON,B.C.POULSEN,S.P.GURUNG, JRNL AUTH 2 I.P.CLARK,I.V.SAZANOVICH,M.TOWRIE,T.GUNNLAUGSSON,S.J.QUINN, JRNL AUTH 3 C.J.CARDIN,J.M.KELLY JRNL TITL INOSINE CAN INCREASE DNA'S SUSCEPTIBILITY TO PHOTO-OXIDATION JRNL TITL 2 BY A RU(II) COMPLEX DUE TO STRUCTURAL CHANGE IN THE MINOR JRNL TITL 3 GROOVE. JRNL REF CHEMISTRY V. 23 10344 2017 JRNL REFN ISSN 1521-3765 JRNL PMID 28543779 JRNL DOI 10.1002/CHEM.201701447 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.M.KEANE,J.P.HALL,F.E.POYNTON,S.P.GURUNG,I.P.CLARK, REMARK 1 AUTH 2 I.V.SAZANOVICH,M.TOWRIE,T.GUNNLAUGSSON,J.A.BRAZIER, REMARK 1 AUTH 3 S.J.QUINN,C.J.CARDIN,J.M.KELLY REMARK 1 TITL UNEXPECTED ENHANCEMENT OF SENSITISED PHOTO-OXIDATION BY A REMARK 1 TITL 2 RU(II) COMPLEX ON REPLACEMENT OF GUANINE WITH INOSINE IN DNA REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 7182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 202 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 338 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 157 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 530 ; 2.103 ; 1.543 REMARK 3 BOND ANGLES OTHERS (DEGREES): 363 ; 1.493 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 36 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 200 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 86 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 338 ; 0.821 ; 1.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 339 ; 0.820 ; 7.337 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 531 ; 1.200 ;29.577 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 739 ; 2.491 ;21.176 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 707 ; 2.162 ;20.673 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 338 ; 0.604 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 12 ;17.624 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 350 ;10.092 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ET2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DUAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 23.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL 2MM SINGLE STRANDED DNA, 1UL 4MM REMARK 280 RAC-RUTAP2DPPZ, 6UL OF A SOLUTION CONTAINING 40MM NA-CACODYLATE REMARK 280 PH 7, 12MM SPERMINE, 20MM BACL2, 80MM KCL, 10% 2-METHYL-2,4- REMARK 280 PENTANEDIOL., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.65000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.19000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.47500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.19000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.82500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.47500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.19000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.82500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 263 LIES ON A SPECIAL POSITION. REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 265 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 102 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O6 REMARK 620 2 HOH A 201 O 72.1 REMARK 620 3 HOH A 210 O 128.4 139.5 REMARK 620 4 HOH A 214 O 139.2 75.6 67.9 REMARK 620 5 HOH A 216 O 63.5 83.7 135.5 136.2 REMARK 620 6 HOH A 241 O 108.3 149.7 64.9 112.2 70.6 REMARK 620 7 HOH A 262 O 125.8 77.2 103.9 68.2 69.7 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RKL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 102 DBREF 5ET2 A 1 10 PDB 5ET2 5ET2 1 10 SEQRES 1 A 10 THM DT DG DG DC DG DC DC DA DA HET THM A 1 30 HET RKL A 101 73 HET BA A 102 1 HETNAM THM THYMIDINE HETNAM RKL RU(TAP)2(DPPZ) COMPLEX HETNAM BA BARIUM ION HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 1 THM C10 H14 N2 O5 FORMUL 2 RKL C38 H22 N12 RU 2+ FORMUL 3 BA BA 2+ FORMUL 4 HOH *65(H2 O) LINK O3' THM A 1 P DT A 2 1555 1555 1.60 LINK O6 DG A 4 BA BA A 102 1555 1555 2.94 LINK BA BA A 102 O HOH A 201 1555 1555 2.72 LINK BA BA A 102 O HOH A 210 1555 1555 2.76 LINK BA BA A 102 O HOH A 214 1555 1555 2.78 LINK BA BA A 102 O HOH A 216 1555 1555 2.63 LINK BA BA A 102 O HOH A 241 1555 1555 2.81 LINK BA BA A 102 O HOH A 262 1555 1555 2.77 SITE 1 AC1 9 THM A 1 DT A 2 DG A 3 DG A 4 SITE 2 AC1 9 DC A 5 DC A 7 DC A 8 DA A 9 SITE 3 AC1 9 DA A 10 SITE 1 AC2 8 DG A 3 DG A 4 HOH A 201 HOH A 210 SITE 2 AC2 8 HOH A 214 HOH A 216 HOH A 241 HOH A 262 CRYST1 42.380 42.380 39.300 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025445 0.00000 HETATM 1 O5' THM A 1 3.153 6.041 15.045 1.00 25.48 O ANISOU 1 O5' THM A 1 2684 3453 3543 -55 72 241 O HETATM 2 C5' THM A 1 1.763 6.031 14.664 1.00 21.90 C ANISOU 2 C5' THM A 1 2718 2727 2873 84 46 147 C HETATM 3 C4' THM A 1 1.415 7.269 13.870 1.00 21.48 C ANISOU 3 C4' THM A 1 2855 2626 2679 24 29 42 C HETATM 4 O4' THM A 1 1.626 8.448 14.676 1.00 21.66 O ANISOU 4 O4' THM A 1 2831 2627 2768 6 167 6 O HETATM 5 C3' THM A 1 2.250 7.486 12.612 1.00 21.51 C ANISOU 5 C3' THM A 1 2817 2638 2717 214 60 92 C HETATM 6 O3' THM A 1 1.657 6.770 11.523 1.00 21.95 O ANISOU 6 O3' THM A 1 2941 2568 2830 272 -42 93 O HETATM 7 C2' THM A 1 2.213 8.994 12.435 1.00 21.05 C ANISOU 7 C2' THM A 1 2805 2614 2578 53 63 44 C HETATM 8 C1' THM A 1 2.041 9.535 13.858 1.00 20.55 C ANISOU 8 C1' THM A 1 2618 2548 2638 40 42 -36 C HETATM 9 N1 THM A 1 3.253 10.123 14.474 1.00 20.90 N ANISOU 9 N1 THM A 1 2554 2618 2768 57 17 -3 N HETATM 10 C2 THM A 1 3.111 11.251 15.252 1.00 20.78 C ANISOU 10 C2 THM A 1 2547 2621 2724 30 58 2 C HETATM 11 O2 THM A 1 2.039 11.799 15.444 1.00 19.90 O ANISOU 11 O2 THM A 1 2434 2610 2514 28 -78 142 O HETATM 12 N3 THM A 1 4.281 11.727 15.791 1.00 21.53 N ANISOU 12 N3 THM A 1 2545 2662 2972 82 -48 -3 N HETATM 13 C4 THM A 1 5.547 11.193 15.644 1.00 22.15 C ANISOU 13 C4 THM A 1 2572 2757 3084 83 17 -72 C HETATM 14 O4 THM A 1 6.505 11.733 16.190 1.00 23.98 O ANISOU 14 O4 THM A 1 2554 3163 3393 98 -89 -162 O HETATM 15 C5 THM A 1 5.622 10.005 14.822 1.00 22.19 C ANISOU 15 C5 THM A 1 2592 2704 3132 57 -55 -58 C HETATM 16 C5M THM A 1 6.952 9.353 14.604 1.00 23.47 C ANISOU 16 C5M THM A 1 2638 2848 3429 115 -34 -145 C HETATM 17 C6 THM A 1 4.486 9.531 14.294 1.00 22.14 C ANISOU 17 C6 THM A 1 2543 2757 3110 83 -17 -62 C HETATM 18 HO5' THM A 1 3.636 6.890 15.131 1.00 20.40 H HETATM 19 H5'1 THM A 1 1.141 5.985 15.561 1.00 20.24 H HETATM 20 H5'2 THM A 1 1.555 5.142 14.064 1.00 20.24 H HETATM 21 H4' THM A 1 0.358 7.208 13.577 1.00 20.24 H HETATM 22 H3' THM A 1 3.280 7.150 12.781 1.00 20.40 H HETATM 23 H2'1 THM A 1 1.367 9.283 11.812 1.00 20.42 H HETATM 24 H2'2 THM A 1 3.128 9.359 11.965 1.00 20.41 H HETATM 25 H1' THM A 1 1.227 10.270 13.810 1.00 20.24 H HETATM 26 HN3 THM A 1 4.199 12.575 16.370 1.00 20.24 H HETATM 27 HM51 THM A 1 7.738 9.946 14.992 1.00 20.24 H HETATM 28 HM52 THM A 1 6.959 8.408 15.083 1.00 20.24 H HETATM 29 HM53 THM A 1 7.105 9.218 13.566 1.00 20.24 H HETATM 30 H6 THM A 1 4.573 8.645 13.687 1.00 20.41 H