HEADER MEMBRANE PROTEIN 18-NOV-15 5ETZ TITLE STRUCTURE OF THE ALL-TRANS ISOMER OF PHARAONIS HALORHODOPSIN IN THE TITLE 2 ABSENCE OF HALIDE IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALORHODOPSIN; COMPND 3 CHAIN: A, B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NATRONOMONAS PHARAONIS DSM 2160; SOURCE 3 ORGANISM_TAXID: 348780; SOURCE 4 STRAIN: DSM 2160 KEYWDS RETINAL PROTEIN, LIGHT-DRIVEN, CHLORIDE ION PUMP, SEVEN- KEYWDS 2 TRANSMEMBRANE, ALPHA HELICES, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KOUYAMA REVDAT 7 06-NOV-24 5ETZ 1 REMARK REVDAT 6 08-NOV-23 5ETZ 1 REMARK REVDAT 5 14-OCT-20 5ETZ 1 HETSYN REVDAT 4 29-JUL-20 5ETZ 1 COMPND REMARK HETNAM SITE REVDAT 3 19-FEB-20 5ETZ 1 JRNL REMARK REVDAT 2 10-AUG-16 5ETZ 1 JRNL REVDAT 1 27-JUL-16 5ETZ 0 JRNL AUTH S.K.CHAN,H.KAWAGUCHI,H.KUBO,M.MURAKAMI,K.IHARA,K.MAKI, JRNL AUTH 2 T.KOUYAMA JRNL TITL CRYSTAL STRUCTURE OF THE 11-CIS ISOMER OF PHARAONIS JRNL TITL 2 HALORHODOPSIN: STRUCTURAL CONSTRAINTS ON INTERCONVERSIONS JRNL TITL 3 AMONG DIFFERENT ISOMERIC STATES JRNL REF BIOCHEMISTRY V. 55 4092 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27352034 JRNL DOI 10.1021/ACS.BIOCHEM.6B00277 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 99008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 5001 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 343 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -2.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.91900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ETZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SILICON MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99234 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QBG REMARK 200 REMARK 200 REMARK: THE CRYSTAL MOSAICITY WAS 0.97. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTAL WAS PREPARED BY THE REMARK 280 MEMBRANE FUSION METHOD. A MIXTURE SOLUTION CONTAINING 3 MG/ML REMARK 280 HALORHODOPSIN, 9 MG/ML NONYLGLUCOSIDE, 1 M AMMONIUM SULFATE, 0.1 REMARK 280 M SODIUM AZIDE WAS CONCENTRATED BY THE SITTING-DROP VAPOR REMARK 280 DIFFUSION METHOD. THE CRYSTAL SOAKING IN A HALIDE-ION-FREE REMARK 280 SOLUTION WAS PERFORMED UNDER DIM RED LIGHT, AND THEN THE CRYSTAL REMARK 280 WAS RAPIDLY COOLED WITH LIQUID PROPANE AT 87 K., PH 6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 GLN A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 279 REMARK 465 ASP A 280 REMARK 465 VAL A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 465 ALA A 284 REMARK 465 SER A 285 REMARK 465 GLY A 286 REMARK 465 ALA A 287 REMARK 465 PRO A 288 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 ASP A 291 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 PRO B 6 REMARK 465 PRO B 7 REMARK 465 VAL B 8 REMARK 465 THR B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 GLN B 16 REMARK 465 ALA B 17 REMARK 465 ILE B 278 REMARK 465 LEU B 279 REMARK 465 ASP B 280 REMARK 465 VAL B 281 REMARK 465 PRO B 282 REMARK 465 SER B 283 REMARK 465 ALA B 284 REMARK 465 SER B 285 REMARK 465 GLY B 286 REMARK 465 ALA B 287 REMARK 465 PRO B 288 REMARK 465 ALA B 289 REMARK 465 ASP B 290 REMARK 465 ASP B 291 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 THR D 4 REMARK 465 LEU D 5 REMARK 465 PRO D 6 REMARK 465 PRO D 7 REMARK 465 VAL D 8 REMARK 465 THR D 9 REMARK 465 GLU D 10 REMARK 465 SER D 11 REMARK 465 ALA D 12 REMARK 465 VAL D 13 REMARK 465 ALA D 14 REMARK 465 LEU D 15 REMARK 465 GLN D 16 REMARK 465 ALA D 17 REMARK 465 ILE D 278 REMARK 465 LEU D 279 REMARK 465 ASP D 280 REMARK 465 VAL D 281 REMARK 465 PRO D 282 REMARK 465 SER D 283 REMARK 465 ALA D 284 REMARK 465 SER D 285 REMARK 465 GLY D 286 REMARK 465 ALA D 287 REMARK 465 PRO D 288 REMARK 465 ALA D 289 REMARK 465 ASP D 290 REMARK 465 ASP D 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLU D 18 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 418 O HOH A 418 2656 0.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -13.74 76.05 REMARK 500 MET A 108 88.24 63.20 REMARK 500 LYS A 256 -71.37 -105.80 REMARK 500 ASN A 270 39.87 -141.72 REMARK 500 VAL B 107 -37.31 -134.08 REMARK 500 MET B 108 74.13 80.72 REMARK 500 VAL B 196 -61.45 -101.13 REMARK 500 LYS B 256 -68.44 -108.85 REMARK 500 ASN D 30 -2.82 71.71 REMARK 500 LYS D 256 -65.77 -108.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 22B A 302 REMARK 610 L3P A 303 REMARK 610 L3P A 304 REMARK 610 L3P B 302 REMARK 610 L3P B 303 REMARK 610 L3P D 302 REMARK 610 L3P D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A7K RELATED DB: PDB REMARK 900 CONTAINS CHLORIDE-ION-BOUND FORMS OF PHARAONIS HALORHDODOSIN REMARK 900 RELATED ID: 3QBG RELATED DB: PDB REMARK 900 CONTAINS THE ALL-TRANS ISOMER OF HALIDE-ION-FREE PHARAONIS REMARK 900 HALORHODOPSIN DBREF 5ETZ A 1 291 UNP Q3ITX1 Q3ITX1_NATPD 1 291 DBREF 5ETZ B 1 291 UNP Q3ITX1 Q3ITX1_NATPD 1 291 DBREF 5ETZ D 1 291 UNP Q3ITX1 Q3ITX1_NATPD 1 291 SEQRES 1 A 291 MET THR GLU THR LEU PRO PRO VAL THR GLU SER ALA VAL SEQRES 2 A 291 ALA LEU GLN ALA GLU VAL THR GLN ARG GLU LEU PHE GLU SEQRES 3 A 291 PHE VAL LEU ASN ASP PRO LEU LEU ALA SER SER LEU TYR SEQRES 4 A 291 ILE ASN ILE ALA LEU ALA GLY LEU SER ILE LEU LEU PHE SEQRES 5 A 291 VAL PHE MET THR ARG GLY LEU ASP ASP PRO ARG ALA LYS SEQRES 6 A 291 LEU ILE ALA VAL SER THR ILE LEU VAL PRO VAL VAL SER SEQRES 7 A 291 ILE ALA SER TYR THR GLY LEU ALA SER GLY LEU THR ILE SEQRES 8 A 291 SER VAL LEU GLU MET PRO ALA GLY HIS PHE ALA GLU GLY SEQRES 9 A 291 SER SER VAL MET LEU GLY GLY GLU GLU VAL ASP GLY VAL SEQRES 10 A 291 VAL THR MET TRP GLY ARG TYR LEU THR TRP ALA LEU SER SEQRES 11 A 291 THR PRO MET ILE LEU LEU ALA LEU GLY LEU LEU ALA GLY SEQRES 12 A 291 SER ASN ALA THR LYS LEU PHE THR ALA ILE THR PHE ASP SEQRES 13 A 291 ILE ALA MET CYS VAL THR GLY LEU ALA ALA ALA LEU THR SEQRES 14 A 291 THR SER SER HIS LEU MET ARG TRP PHE TRP TYR ALA ILE SEQRES 15 A 291 SER CYS ALA CYS PHE ILE VAL VAL LEU TYR ILE LEU LEU SEQRES 16 A 291 VAL GLU TRP ALA GLN ASP ALA LYS ALA ALA GLY THR ALA SEQRES 17 A 291 ASP ILE PHE SER THR LEU LYS LEU LEU THR VAL VAL MET SEQRES 18 A 291 TRP LEU GLY TYR PRO ILE VAL TRP ALA LEU GLY VAL GLU SEQRES 19 A 291 GLY VAL ALA VAL LEU PRO VAL GLY TYR THR SER TRP ALA SEQRES 20 A 291 TYR SER ALA LEU ASP ILE VAL ALA LYS TYR ILE PHE ALA SEQRES 21 A 291 PHE LEU LEU LEU ASN TYR LEU THR SER ASN GLU GLY VAL SEQRES 22 A 291 VAL SER GLY SER ILE LEU ASP VAL PRO SER ALA SER GLY SEQRES 23 A 291 ALA PRO ALA ASP ASP SEQRES 1 B 291 MET THR GLU THR LEU PRO PRO VAL THR GLU SER ALA VAL SEQRES 2 B 291 ALA LEU GLN ALA GLU VAL THR GLN ARG GLU LEU PHE GLU SEQRES 3 B 291 PHE VAL LEU ASN ASP PRO LEU LEU ALA SER SER LEU TYR SEQRES 4 B 291 ILE ASN ILE ALA LEU ALA GLY LEU SER ILE LEU LEU PHE SEQRES 5 B 291 VAL PHE MET THR ARG GLY LEU ASP ASP PRO ARG ALA LYS SEQRES 6 B 291 LEU ILE ALA VAL SER THR ILE LEU VAL PRO VAL VAL SER SEQRES 7 B 291 ILE ALA SER TYR THR GLY LEU ALA SER GLY LEU THR ILE SEQRES 8 B 291 SER VAL LEU GLU MET PRO ALA GLY HIS PHE ALA GLU GLY SEQRES 9 B 291 SER SER VAL MET LEU GLY GLY GLU GLU VAL ASP GLY VAL SEQRES 10 B 291 VAL THR MET TRP GLY ARG TYR LEU THR TRP ALA LEU SER SEQRES 11 B 291 THR PRO MET ILE LEU LEU ALA LEU GLY LEU LEU ALA GLY SEQRES 12 B 291 SER ASN ALA THR LYS LEU PHE THR ALA ILE THR PHE ASP SEQRES 13 B 291 ILE ALA MET CYS VAL THR GLY LEU ALA ALA ALA LEU THR SEQRES 14 B 291 THR SER SER HIS LEU MET ARG TRP PHE TRP TYR ALA ILE SEQRES 15 B 291 SER CYS ALA CYS PHE ILE VAL VAL LEU TYR ILE LEU LEU SEQRES 16 B 291 VAL GLU TRP ALA GLN ASP ALA LYS ALA ALA GLY THR ALA SEQRES 17 B 291 ASP ILE PHE SER THR LEU LYS LEU LEU THR VAL VAL MET SEQRES 18 B 291 TRP LEU GLY TYR PRO ILE VAL TRP ALA LEU GLY VAL GLU SEQRES 19 B 291 GLY VAL ALA VAL LEU PRO VAL GLY TYR THR SER TRP ALA SEQRES 20 B 291 TYR SER ALA LEU ASP ILE VAL ALA LYS TYR ILE PHE ALA SEQRES 21 B 291 PHE LEU LEU LEU ASN TYR LEU THR SER ASN GLU GLY VAL SEQRES 22 B 291 VAL SER GLY SER ILE LEU ASP VAL PRO SER ALA SER GLY SEQRES 23 B 291 ALA PRO ALA ASP ASP SEQRES 1 D 291 MET THR GLU THR LEU PRO PRO VAL THR GLU SER ALA VAL SEQRES 2 D 291 ALA LEU GLN ALA GLU VAL THR GLN ARG GLU LEU PHE GLU SEQRES 3 D 291 PHE VAL LEU ASN ASP PRO LEU LEU ALA SER SER LEU TYR SEQRES 4 D 291 ILE ASN ILE ALA LEU ALA GLY LEU SER ILE LEU LEU PHE SEQRES 5 D 291 VAL PHE MET THR ARG GLY LEU ASP ASP PRO ARG ALA LYS SEQRES 6 D 291 LEU ILE ALA VAL SER THR ILE LEU VAL PRO VAL VAL SER SEQRES 7 D 291 ILE ALA SER TYR THR GLY LEU ALA SER GLY LEU THR ILE SEQRES 8 D 291 SER VAL LEU GLU MET PRO ALA GLY HIS PHE ALA GLU GLY SEQRES 9 D 291 SER SER VAL MET LEU GLY GLY GLU GLU VAL ASP GLY VAL SEQRES 10 D 291 VAL THR MET TRP GLY ARG TYR LEU THR TRP ALA LEU SER SEQRES 11 D 291 THR PRO MET ILE LEU LEU ALA LEU GLY LEU LEU ALA GLY SEQRES 12 D 291 SER ASN ALA THR LYS LEU PHE THR ALA ILE THR PHE ASP SEQRES 13 D 291 ILE ALA MET CYS VAL THR GLY LEU ALA ALA ALA LEU THR SEQRES 14 D 291 THR SER SER HIS LEU MET ARG TRP PHE TRP TYR ALA ILE SEQRES 15 D 291 SER CYS ALA CYS PHE ILE VAL VAL LEU TYR ILE LEU LEU SEQRES 16 D 291 VAL GLU TRP ALA GLN ASP ALA LYS ALA ALA GLY THR ALA SEQRES 17 D 291 ASP ILE PHE SER THR LEU LYS LEU LEU THR VAL VAL MET SEQRES 18 D 291 TRP LEU GLY TYR PRO ILE VAL TRP ALA LEU GLY VAL GLU SEQRES 19 D 291 GLY VAL ALA VAL LEU PRO VAL GLY TYR THR SER TRP ALA SEQRES 20 D 291 TYR SER ALA LEU ASP ILE VAL ALA LYS TYR ILE PHE ALA SEQRES 21 D 291 PHE LEU LEU LEU ASN TYR LEU THR SER ASN GLU GLY VAL SEQRES 22 D 291 VAL SER GLY SER ILE LEU ASP VAL PRO SER ALA SER GLY SEQRES 23 D 291 ALA PRO ALA ASP ASP HET RET A 301 20 HET 22B A 302 37 HET L3P A 303 20 HET L3P A 304 20 HET BNG A 305 21 HET BNG A 306 21 HET BNG A 307 21 HET RET B 301 20 HET L3P B 302 20 HET L3P B 303 20 HET BNG B 304 21 HET BNG B 305 21 HET RET D 301 20 HET L3P D 302 20 HET L3P D 303 20 HET BNG D 304 21 HETNAM RET RETINAL HETNAM 22B BACTERIORUBERIN HETNAM L3P 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN- HETNAM 2 L3P GLYCEROL-1'-PHOSPHATE HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE FORMUL 4 RET 3(C20 H28 O) FORMUL 5 22B C50 H76 O4 FORMUL 6 L3P 6(C46 H94 O11 P2 2-) FORMUL 8 BNG 6(C15 H30 O6) FORMUL 20 HOH *227(H2 O) HELIX 1 AA1 THR A 20 LEU A 29 1 10 HELIX 2 AA2 ASP A 31 THR A 56 1 26 HELIX 3 AA3 ASP A 61 SER A 87 1 27 HELIX 4 AA4 GLY A 122 ALA A 142 1 21 HELIX 5 AA5 ASN A 145 THR A 169 1 25 HELIX 6 AA6 SER A 172 VAL A 196 1 25 HELIX 7 AA7 VAL A 196 GLY A 206 1 11 HELIX 8 AA8 THR A 207 GLY A 232 1 26 HELIX 9 AA9 PRO A 240 LYS A 256 1 17 HELIX 10 AB1 LYS A 256 THR A 268 1 13 HELIX 11 AB2 ASN A 270 SER A 275 1 6 HELIX 12 AB3 THR B 20 LEU B 29 1 10 HELIX 13 AB4 ASP B 31 THR B 56 1 26 HELIX 14 AB5 ASP B 61 SER B 87 1 27 HELIX 15 AB6 TRP B 121 ALA B 142 1 22 HELIX 16 AB7 ASN B 145 THR B 169 1 25 HELIX 17 AB8 SER B 172 VAL B 196 1 25 HELIX 18 AB9 VAL B 196 ALA B 205 1 10 HELIX 19 AC1 THR B 207 GLY B 232 1 26 HELIX 20 AC2 PRO B 240 LYS B 256 1 17 HELIX 21 AC3 LYS B 256 ASN B 270 1 15 HELIX 22 AC4 ASN B 270 GLY B 276 1 7 HELIX 23 AC5 THR D 20 LEU D 29 1 10 HELIX 24 AC6 ASP D 31 THR D 56 1 26 HELIX 25 AC7 ASP D 61 SER D 87 1 27 HELIX 26 AC8 TRP D 121 GLY D 143 1 23 HELIX 27 AC9 ASN D 145 THR D 169 1 25 HELIX 28 AD1 SER D 172 VAL D 196 1 25 HELIX 29 AD2 VAL D 196 GLY D 206 1 11 HELIX 30 AD3 THR D 207 GLY D 232 1 26 HELIX 31 AD4 PRO D 240 LYS D 256 1 17 HELIX 32 AD5 LYS D 256 THR D 268 1 13 HELIX 33 AD6 ASN D 270 SER D 275 1 6 SHEET 1 AA1 2 SER A 92 LEU A 94 0 SHEET 2 AA1 2 VAL A 117 THR A 119 -1 O THR A 119 N SER A 92 SHEET 1 AA2 2 SER B 92 LEU B 94 0 SHEET 2 AA2 2 VAL B 117 THR B 119 -1 O THR B 119 N SER B 92 SHEET 1 AA3 2 SER D 92 LEU D 94 0 SHEET 2 AA3 2 VAL D 117 THR D 119 -1 O THR D 119 N SER D 92 SHEET 1 AA4 2 SER D 106 LEU D 109 0 SHEET 2 AA4 2 GLU D 112 ASP D 115 -1 O VAL D 114 N VAL D 107 LINK NZ LYS A 256 C15 RET A 301 1555 1555 1.35 LINK NZ LYS B 256 C15 RET B 301 1555 1555 1.35 LINK NZ LYS D 256 C15 RET D 301 1555 1555 1.35 CRYST1 154.400 97.770 101.620 90.00 128.81 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006477 0.000000 0.005209 0.00000 SCALE2 0.000000 0.010228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012629 0.00000