HEADER UNKNOWN FUNCTION 19-NOV-15 5EVG TITLE CRYSTAL STRUCTURE OF A FRANCISELLA VIRULENCE FACTOR FVFA IN THE TITLE 2 ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRANCISELLA VIRULENCE FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 32-132; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA NOVICIDA; SOURCE 3 ORGANISM_TAXID: 264; SOURCE 4 GENE: ACX55_1794; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRANCISELLA TULARENSIS, VIRULENCE FACTOR, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.KOLAPPAN,K.Y.LO,C.L.J.SHEN,J.A.GUTTMAN,L.CRAIG REVDAT 7 30-OCT-24 5EVG 1 REMARK REVDAT 6 27-SEP-23 5EVG 1 REMARK REVDAT 5 08-JAN-20 5EVG 1 REMARK REVDAT 4 20-DEC-17 5EVG 1 JRNL REVDAT 3 18-OCT-17 5EVG 1 JRNL REVDAT 2 06-SEP-17 5EVG 1 REMARK REVDAT 1 26-OCT-16 5EVG 0 JRNL AUTH S.KOLAPPAN,K.Y.LO,C.L.J.SHEN,J.A.GUTTMAN,L.CRAIG JRNL TITL STRUCTURE OF THE CONSERVED FRANCISELLA VIRULENCE PROTEIN JRNL TITL 2 FVFA. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 814 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28994410 JRNL DOI 10.1107/S205979831701333X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BRUNTON,S.STEELE,C.MILLER,E.LOVULLO,S.TAFT-BENZ,T.KAWULA REMARK 1 TITL IDENTIFYING FRANCISELLA TULARENSIS GENES REQUIRED FOR GROWTH REMARK 1 TITL 2 IN HOST CELLS. REMARK 1 REF INFECT. IMMUN. V. 83 3015 2015 REMARK 1 REFN ESSN 1098-5522 REMARK 1 PMID 25987704 REMARK 1 DOI 10.1128/IAI.00004-15 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2299: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3849 - 2.8889 1.00 2625 124 0.1930 0.2176 REMARK 3 2 2.8889 - 2.2931 1.00 2478 138 0.2270 0.3130 REMARK 3 3 2.2931 - 2.0032 1.00 2452 130 0.2137 0.2713 REMARK 3 4 2.0032 - 1.8201 1.00 2443 111 0.2592 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 902 REMARK 3 ANGLE : 0.714 1227 REMARK 3 CHIRALITY : 0.049 127 REMARK 3 PLANARITY : 0.004 165 REMARK 3 DIHEDRAL : 13.254 558 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.0868 -3.7139 -3.9024 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.1771 REMARK 3 T33: 0.2201 T12: 0.0549 REMARK 3 T13: 0.0217 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.7369 L22: 3.2846 REMARK 3 L33: 2.5902 L12: 1.0038 REMARK 3 L13: -0.3398 L23: -1.1753 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.2035 S13: 0.3468 REMARK 3 S21: -0.1733 S22: 0.0148 S23: -0.0055 REMARK 3 S31: 0.0045 S32: -0.5060 S33: 0.1293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9753 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.6.18 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 37.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 5EVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRIC ACID, PEG 3350, PH 3.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.35100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.37700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.88600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.37700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.35100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.88600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 MET A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 234 O HOH A 247 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EVF RELATED DB: PDB DBREF1 5EVG A 32 132 UNP A0A0K1NSD0_FRANO DBREF2 5EVG A A0A0K1NSD0 32 132 SEQADV 5EVG GLY A 28 UNP A0A0K1NSD EXPRESSION TAG SEQADV 5EVG SER A 29 UNP A0A0K1NSD EXPRESSION TAG SEQADV 5EVG HIS A 30 UNP A0A0K1NSD EXPRESSION TAG SEQADV 5EVG MET A 31 UNP A0A0K1NSD EXPRESSION TAG SEQRES 1 A 105 GLY SER HIS MET GLU THR LYS GLY VAL TYR LEU PRO LYS SEQRES 2 A 105 TYR SER ALA GLU LEU PRO PRO THR ASP PRO SER GLN VAL SEQRES 3 A 105 ARG VAL TYR ASN LEU GLN TYR GLN SER ASP THR GLN GLY SEQRES 4 A 105 ASN ILE GLY GLN VAL ARG THR SER THR HIS VAL SER ASN SEQRES 5 A 105 GLU LYS ASP PHE GLN LYS LEU CYS ASP LYS ASN LEU LYS SEQRES 6 A 105 GLU ALA ILE LYS LEU ALA ALA GLN HIS GLY ALA HIS GLU SEQRES 7 A 105 ILE LYS TYR ILE CYS LEU TYR PRO GLU GLY GLN ILE ASN SEQRES 8 A 105 GLU LEU SER SER VAL GLN LEU ARG GLY TYR ALA PHE ARG SEQRES 9 A 105 ASP FORMUL 2 HOH *57(H2 O) HELIX 1 AA1 ASP A 49 VAL A 53 5 5 HELIX 2 AA2 TYR A 60 GLN A 65 5 6 HELIX 3 AA3 ASN A 79 LYS A 81 5 3 HELIX 4 AA4 ASP A 82 HIS A 101 1 20 SHEET 1 AA1 5 LYS A 34 PRO A 39 0 SHEET 2 AA1 5 GLY A 69 HIS A 76 -1 O GLN A 70 N LEU A 38 SHEET 3 AA1 5 SER A 122 PHE A 130 -1 O ALA A 129 N GLY A 69 SHEET 4 AA1 5 GLU A 105 LEU A 111 -1 N LEU A 111 O GLN A 124 SHEET 5 AA1 5 ARG A 54 ASN A 57 1 N ARG A 54 O ILE A 106 SSBOND 1 CYS A 87 CYS A 110 1555 1555 2.04 CRYST1 28.702 51.772 74.754 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013377 0.00000