HEADER DNA 20-NOV-15 5EWB TITLE RACEMIC CRYSTAL STRUCTURES OF PRIBNOW BOX CONSENSUS PROMOTER SEQUENCE TITLE 2 (P21/C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PRIBNOW BOX TEMPLATE STRAND CONTAINING CONSENSUS COMPND 6 SEQUENCE TATAAT; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: PRIBNOW BOX CONSENSUS SEQUENCE TATAAT; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS RACEMIC DNA CRYSTALLOGRAPHY, PRIBNOW BOX, BACTERIAL PROMOTER, B-DNA, KEYWDS 2 DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.K.MANDAL,G.W.COLLIE,B.KAUFFMANN,S.C.SRIVASTAVA,I.HUC REVDAT 3 10-JAN-24 5EWB 1 REMARK REVDAT 2 20-JUL-16 5EWB 1 JRNL REVDAT 1 18-MAY-16 5EWB 0 JRNL AUTH P.K.MANDAL,G.W.COLLIE,S.C.SRIVASTAVA,B.KAUFFMANN,I.HUC JRNL TITL STRUCTURE ELUCIDATION OF THE PRIBNOW BOX CONSENSUS PROMOTER JRNL TITL 2 SEQUENCE BY RACEMIC DNA CRYSTALLOGRAPHY. JRNL REF NUCLEIC ACIDS RES. V. 44 5936 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27137886 JRNL DOI 10.1093/NAR/GKW367 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.K.MANDAL,G.W.COLLIE,B.KAUFFMANN,I.HUC REMARK 1 TITL RACEMIC DNA CRYSTALLOGRAPHY REMARK 1 REF ANGEW CHEM INT ED ENGL. V. 53 14424 2014 REMARK 1 REFN ISSN 1433-7851 REMARK 1 PMID 25358289 REMARK 1 DOI 10.1002/ANIE.201409014 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.301 REMARK 3 R VALUE (WORKING SET) : 0.299 REMARK 3 FREE R VALUE : 0.350 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6154 - 3.6490 1.00 2813 131 0.2064 0.2588 REMARK 3 2 3.6490 - 2.8965 0.99 2762 142 0.3093 0.3397 REMARK 3 3 2.8965 - 2.5304 1.00 2817 131 0.3574 0.4228 REMARK 3 4 2.5304 - 2.2991 1.00 2778 174 0.3576 0.3492 REMARK 3 5 2.2991 - 2.1343 1.00 2824 130 0.3571 0.4737 REMARK 3 6 2.1343 - 2.0085 1.00 2780 154 0.3811 0.4676 REMARK 3 7 2.0085 - 1.9079 1.00 2787 149 0.4257 0.4311 REMARK 3 8 1.9079 - 1.8248 1.00 2794 143 0.4153 0.4447 REMARK 3 9 1.8248 - 1.7546 0.99 2763 150 0.4263 0.4477 REMARK 3 10 1.7546 - 1.6940 0.95 2679 127 0.4521 0.4835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1088 REMARK 3 ANGLE : 1.012 1672 REMARK 3 CHIRALITY : 0.052 188 REMARK 3 PLANARITY : 0.011 48 REMARK 3 DIHEDRAL : 32.169 464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2314 4.6552 8.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.3839 T22: 0.3974 REMARK 3 T33: 0.4816 T12: 0.0712 REMARK 3 T13: -0.1104 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 2.3824 L22: 3.4968 REMARK 3 L33: 2.9191 L12: 0.1401 REMARK 3 L13: 0.2738 L23: -0.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.3568 S12: 0.1361 S13: 0.5486 REMARK 3 S21: -0.4487 S22: -0.3175 S23: 0.4810 REMARK 3 S31: -0.4350 S32: -0.3977 S33: 0.5475 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0677 23.2576 17.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: 0.3726 REMARK 3 T33: 0.3345 T12: 0.0060 REMARK 3 T13: 0.0198 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 6.3926 L22: 7.9204 REMARK 3 L33: 2.0659 L12: -2.2891 REMARK 3 L13: 2.3152 L23: -0.3182 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.4147 S13: 0.4609 REMARK 3 S21: 0.4967 S22: -0.3429 S23: -0.6605 REMARK 3 S31: 0.2567 S32: -0.0118 S33: 0.4309 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6372 24.4658 13.5866 REMARK 3 T TENSOR REMARK 3 T11: 0.4425 T22: 0.3673 REMARK 3 T33: 0.3647 T12: 0.0568 REMARK 3 T13: 0.0148 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.2453 L22: 2.5756 REMARK 3 L33: 0.9738 L12: -1.1725 REMARK 3 L13: 0.9854 L23: -0.3661 REMARK 3 S TENSOR REMARK 3 S11: 0.2814 S12: 0.3180 S13: -0.2248 REMARK 3 S21: -0.3626 S22: -0.3686 S23: -0.1164 REMARK 3 S31: 0.1892 S32: 0.1797 S33: 0.1087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1804 4.5655 16.2136 REMARK 3 T TENSOR REMARK 3 T11: 0.3856 T22: 0.4253 REMARK 3 T33: 0.4428 T12: 0.0643 REMARK 3 T13: -0.0944 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9590 L22: 8.1129 REMARK 3 L33: 7.9799 L12: -1.3154 REMARK 3 L13: -0.5772 L23: 3.5309 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: -0.0847 S13: 0.4257 REMARK 3 S21: 0.4981 S22: -0.6462 S23: -0.0582 REMARK 3 S31: -0.2852 S32: -0.7685 S33: 0.4840 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8208 7.4341 32.0831 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.3442 REMARK 3 T33: 0.4052 T12: 0.0617 REMARK 3 T13: 0.0158 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.6207 L22: 3.3627 REMARK 3 L33: 2.9582 L12: -0.0037 REMARK 3 L13: 0.7333 L23: 0.5307 REMARK 3 S TENSOR REMARK 3 S11: -0.2135 S12: 0.1637 S13: 0.6310 REMARK 3 S21: 0.1282 S22: -0.1065 S23: 0.3205 REMARK 3 S31: -0.3288 S32: -0.3379 S33: 0.4150 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.6620 25.8376 39.4618 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: 0.3912 REMARK 3 T33: 0.5288 T12: 0.0101 REMARK 3 T13: 0.1049 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.8336 L22: 5.0095 REMARK 3 L33: 3.0532 L12: -1.1451 REMARK 3 L13: 1.0683 L23: -0.4695 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.2945 S13: 0.0179 REMARK 3 S21: 0.3084 S22: -0.3086 S23: -0.9884 REMARK 3 S31: 0.2093 S32: 0.1913 S33: 0.3374 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5518 27.2005 36.1033 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.3694 REMARK 3 T33: 0.3855 T12: 0.0279 REMARK 3 T13: 0.0906 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.8202 L22: 2.5626 REMARK 3 L33: 1.2424 L12: -0.4077 REMARK 3 L13: 0.9833 L23: -0.0552 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.4262 S13: -0.2991 REMARK 3 S21: -0.6196 S22: -0.1719 S23: -0.4185 REMARK 3 S31: -0.0512 S32: 0.1111 S33: 0.1100 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5092 6.9425 39.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.3741 REMARK 3 T33: 0.4188 T12: 0.0649 REMARK 3 T13: -0.0311 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 4.0124 L22: 6.9891 REMARK 3 L33: 8.0424 L12: -0.1574 REMARK 3 L13: 0.4306 L23: 2.4520 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.6228 S13: 0.6630 REMARK 3 S21: 0.9088 S22: -0.2403 S23: -0.6324 REMARK 3 S31: 0.5027 S32: -0.5586 S33: 0.2804 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.560 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.42 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RACEMIC DNA MIXTURE*, SODIUM REMARK 280 CACODYLATE, SODIUM CHLORIDE, POTASSIUM CHLORIDE, SPERMINE REMARK 280 TETRAHYDROCHLORIDE, MPD *FOR CRYSTALLIZATION, FOUR STRANDS WERE REMARK 280 USED I.E. (1) D(CGCTATAATGCG) WITH L-SUGARS; (2) D(CGCATTATAGCG) REMARK 280 WITH L-SUGARS; (3) D(CGCTATAATGCG) WITH D-SUGARS AND (4) REMARK 280 D(CGCATTATAGCG) WITH D-SUGARS. ENANTIO-PURE DNA SOLUTIONS WERE REMARK 280 PREPARED BETWEEN THE NON-SELF COMPLEMENTARY STRANDS. ENANTIOPURE REMARK 280 DNA SOLUTIONS WERE MIXED IN EQUIMOLAR RATIO AND THIS RACEMIC REMARK 280 MIXTURE WAS USED FOR CRYSTALLIZATION., PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21/c 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z+1/2 REMARK 290 3555 -X,-Y,-Z REMARK 290 4555 X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 -7.87767 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.55750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 22.59618 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 -7.87767 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.55750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.59618 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG B 10 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 10 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG D 10 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ET9 RELATED DB: PDB REMARK 900 5ET9 CONTAINS RACEMIC CRYSTAL STRUCTURE OF THE PRIBNOW BOX IN THE REMARK 900 SPACE GROUP P21/N DBREF 5EWB A 1 12 PDB 5EWB 5EWB 1 12 DBREF 5EWB B 1 12 PDB 5EWB 5EWB 1 12 DBREF 5EWB C 1 12 PDB 5EWB 5EWB 1 12 DBREF 5EWB D 1 12 PDB 5EWB 5EWB 1 12 SEQRES 1 A 12 DC DG DC DT DA DT DA DA DT DG DC DG SEQRES 1 B 12 DC DG DC DA DT DT DA DT DA DG DC DG SEQRES 1 C 12 DC DG DC DT DA DT DA DA DT DG DC DG SEQRES 1 D 12 DC DG DC DA DT DT DA DT DA DG DC DG FORMUL 5 HOH *84(H2 O) CRYST1 45.118 67.115 47.860 90.00 109.22 90.00 P 1 21/c 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022164 0.000000 0.007729 0.00000 SCALE2 0.000000 0.014900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022128 0.00000