HEADER IMMUNE SYSTEM 20-NOV-15 5EWI TITLE CRYSTAL STRUCTURE OF THE HUMAN FAB VRC38.01, AN HIV-1 V1V2-DIRECTED TITLE 2 NEUTRALIZING ANTIBODY ISOLATED FROM DONOR N90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VRC38.01 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VRC38.01 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS FAB, HIV-1, V1V2, ENV, ANTIBODY, ENVELOPE, NEUTRALIZING, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,P.D.KWONG REVDAT 4 27-SEP-23 5EWI 1 REMARK REVDAT 3 31-MAY-17 5EWI 1 JRNL REVDAT 2 24-MAY-17 5EWI 1 JRNL REVDAT 1 23-NOV-16 5EWI 0 JRNL AUTH E.M.CALE,J.GORMAN,N.A.RADAKOVICH,E.T.CROOKS,K.OSAWA,T.TONG, JRNL AUTH 2 J.LI,R.NAGARAJAN,G.OZOROWSKI,D.R.AMBROZAK,M.ASOKAN, JRNL AUTH 3 R.T.BAILER,A.K.BENNICI,X.CHEN,N.A.DORIA-ROSE,A.DRUZ,Y.FENG, JRNL AUTH 4 M.G.JOYCE,M.K.LOUDER,S.O'DELL,C.OLIVER,M.PANCERA,M.CONNORS, JRNL AUTH 5 T.J.HOPE,T.B.KEPLER,R.T.WYATT,A.B.WARD,I.S.GEORGIEV, JRNL AUTH 6 P.D.KWONG,J.R.MASCOLA,J.M.BINLEY JRNL TITL VIRUS-LIKE PARTICLES IDENTIFY AN HIV V1V2 APEX-BINDING JRNL TITL 2 NEUTRALIZING ANTIBODY THAT LACKS A PROTRUDING LOOP. JRNL REF IMMUNITY V. 46 777 2017 JRNL REFN ISSN 1097-4180 JRNL PMID 28514685 JRNL DOI 10.1016/J.IMMUNI.2017.04.011 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 63009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1824 - 3.8530 0.96 4461 150 0.1554 0.1630 REMARK 3 2 3.8530 - 3.0591 0.98 4428 145 0.1512 0.1670 REMARK 3 3 3.0591 - 2.6726 1.00 4435 143 0.1658 0.1836 REMARK 3 4 2.6726 - 2.4284 1.00 4416 146 0.1664 0.2081 REMARK 3 5 2.4284 - 2.2544 0.99 4359 142 0.1824 0.2486 REMARK 3 6 2.2544 - 2.1215 0.99 4360 147 0.1975 0.2442 REMARK 3 7 2.1215 - 2.0153 1.00 4364 140 0.1710 0.2171 REMARK 3 8 2.0153 - 1.9276 0.99 4319 149 0.1908 0.2170 REMARK 3 9 1.9276 - 1.8534 0.99 4318 140 0.2595 0.3277 REMARK 3 10 1.8534 - 1.7894 1.00 4346 135 0.1787 0.2016 REMARK 3 11 1.7894 - 1.7335 1.00 4316 155 0.1805 0.2226 REMARK 3 12 1.7335 - 1.6839 0.99 4332 129 0.1831 0.2091 REMARK 3 13 1.6839 - 1.6396 1.00 4313 150 0.1914 0.2685 REMARK 3 14 1.6396 - 1.5996 0.97 4238 133 0.2042 0.2520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3459 REMARK 3 ANGLE : 0.963 4713 REMARK 3 CHIRALITY : 0.057 524 REMARK 3 PLANARITY : 0.006 604 REMARK 3 DIHEDRAL : 11.197 2078 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8077 -35.7824 -14.6837 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0845 REMARK 3 T33: 0.0962 T12: 0.0017 REMARK 3 T13: 0.0007 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.1107 L22: 2.4006 REMARK 3 L33: 2.0358 L12: 0.3549 REMARK 3 L13: 0.8346 L23: 0.6613 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.1476 S13: -0.0855 REMARK 3 S21: -0.0028 S22: 0.0211 S23: 0.0575 REMARK 3 S31: 0.0122 S32: -0.1053 S33: -0.0448 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 110 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9603 -6.9354 -8.8546 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.2343 REMARK 3 T33: 0.1118 T12: 0.0274 REMARK 3 T13: -0.0103 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 4.9301 L22: 1.5674 REMARK 3 L33: 2.2541 L12: -1.3517 REMARK 3 L13: 1.1046 L23: -0.7443 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.1317 S13: 0.0763 REMARK 3 S21: 0.0799 S22: 0.0641 S23: 0.1924 REMARK 3 S31: -0.1147 S32: -0.5681 S33: -0.0386 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4972 -31.0833 -33.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: 0.0782 REMARK 3 T33: 0.0825 T12: -0.0152 REMARK 3 T13: 0.0126 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2126 L22: 2.9313 REMARK 3 L33: 1.5543 L12: -1.0534 REMARK 3 L13: 0.1914 L23: -0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0772 S13: 0.0113 REMARK 3 S21: -0.0387 S22: -0.0113 S23: -0.0803 REMARK 3 S31: -0.0278 S32: 0.0012 S33: 0.0232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3625 3.8910 -20.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.1695 REMARK 3 T33: 0.2098 T12: 0.0892 REMARK 3 T13: -0.0204 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.3406 L22: 3.3939 REMARK 3 L33: 2.3013 L12: 0.3149 REMARK 3 L13: 0.8594 L23: 0.7768 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: 0.0005 S13: 0.4038 REMARK 3 S21: 0.0039 S22: -0.0065 S23: -0.1955 REMARK 3 S31: -0.2841 S32: 0.0215 S33: 0.0653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XMK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG400, 13% PEG8000, 0.1M TRIS PH REMARK 280 8.5, 0.1M MGCL, NO CRYO, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.17650 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.00150 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.17650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.00150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 466 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 488 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 563 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY H 219 REMARK 465 LEU H 220 REMARK 465 GLU H 221 REMARK 465 VAL H 222 REMARK 465 LEU H 223 REMARK 465 PHE H 224 REMARK 465 GLN H 225 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 445 O HOH L 551 2.00 REMARK 500 O HOH H 462 O HOH H 538 2.04 REMARK 500 O HOH L 515 O HOH L 578 2.05 REMARK 500 O HOH L 438 O HOH L 553 2.05 REMARK 500 O HOH H 495 O HOH H 512 2.05 REMARK 500 O HOH L 424 O HOH L 470 2.07 REMARK 500 O HOH H 396 O HOH H 434 2.07 REMARK 500 O HOH H 473 O HOH L 436 2.08 REMARK 500 O HOH H 337 O HOH H 525 2.10 REMARK 500 O HOH H 462 O HOH H 562 2.11 REMARK 500 O HOH L 420 O HOH L 537 2.12 REMARK 500 O HOH H 431 O HOH L 551 2.13 REMARK 500 O HOH L 497 O HOH L 507 2.17 REMARK 500 O HOH L 531 O HOH L 540 2.18 REMARK 500 O HOH L 383 O HOH L 562 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 332 O HOH H 332 2655 2.04 REMARK 500 O HOH H 539 O HOH L 574 3554 2.12 REMARK 500 O HOH H 424 O HOH L 472 3554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 196 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 64.91 68.13 REMARK 500 THR H 160 -33.52 -131.89 REMARK 500 THR L 94 130.53 -37.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 585 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH H 586 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH H 587 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH L 579 DISTANCE = 5.89 ANGSTROMS DBREF 5EWI H 1 105 PDB 5EWI 5EWI 1 105 DBREF 5EWI H 106 218 UNP Q6N089 Q6N089_HUMAN 135 247 DBREF 5EWI L 1 108 PDB 5EWI 5EWI 1 108 DBREF 5EWI L 109 214 UNP P01834 IGKC_HUMAN 1 106 SEQADV 5EWI GLY H 219 UNP Q6N089 EXPRESSION TAG SEQADV 5EWI LEU H 220 UNP Q6N089 EXPRESSION TAG SEQADV 5EWI GLU H 221 UNP Q6N089 EXPRESSION TAG SEQADV 5EWI VAL H 222 UNP Q6N089 EXPRESSION TAG SEQADV 5EWI LEU H 223 UNP Q6N089 EXPRESSION TAG SEQADV 5EWI PHE H 224 UNP Q6N089 EXPRESSION TAG SEQADV 5EWI GLN H 225 UNP Q6N089 EXPRESSION TAG SEQRES 1 H 236 GLU VAL GLN LEU VAL GLU SER GLY GLY LYS LEU VAL GLN SEQRES 2 H 236 PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 H 236 GLU SER VAL GLY ASP ASN ASP MET HIS TRP VAL ARG GLN SEQRES 4 H 236 VAL ALA GLY LYS GLY LEU GLU TRP VAL SER SER ILE GLY SEQRES 5 H 236 SER SER GLY ASP THR TYR TYR ILE ASP ALA VAL LYS GLY SEQRES 6 H 236 ARG PHE THR VAL SER ARG ASP LYS GLY ARG ASN SER VAL SEQRES 7 H 236 TYR LEU GLN MET LYS THR LEU THR VAL GLY ASP THR GLY SEQRES 8 H 236 VAL TYR PHE CYS VAL ARG GLY PRO GLU SER GLY TRP PHE SEQRES 9 H 236 TYR HIS TYR TYR TRP GLY LEU GLY VAL TRP GLY ARG GLY SEQRES 10 H 236 THR THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 236 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 236 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 236 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 236 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 236 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 236 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 236 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 H 236 VAL GLU PRO LYS SER CYS ASP LYS GLY LEU GLU VAL LEU SEQRES 19 H 236 PHE GLN SEQRES 1 L 220 ASP LEU LEU MET THR GLN SER PRO HIS SER LEU ALA VAL SEQRES 2 L 220 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 220 GLN SER LEU LEU LEU GLY ASN GLY ARG ASN TYR LEU ASP SEQRES 4 L 220 TRP TYR VAL GLN LYS PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 220 ILE TYR LEU GLY SER ASN ARG ALA SER GLY VAL PRO ASP SEQRES 6 L 220 ARG PHE SER GLY SER GLY SER GLY THR TYR PHE THR LEU SEQRES 7 L 220 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY PHE TYR SEQRES 8 L 220 TYR CYS MET GLU ALA ARG GLN THR PRO ARG LEU THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS LEU GLU ILE ARG ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *566(H2 O) HELIX 1 AA1 LYS H 73 ARG H 75 5 3 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 GLY H 190 5 4 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLU L 79 VAL L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 SER H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 GLY H 88 GLU H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ASN H 32 VAL H 40 -1 N VAL H 37 O PHE H 91 SHEET 5 AA2 6 LYS H 43 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 GLY H 88 GLU H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 VAL H 102 TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA7 4 TYR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 AA8 6 SER L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 GLY L 84 GLU L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O PHE L 85 SHEET 5 AA8 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 GLY L 84 GLU L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLU L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.08 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.07 CISPEP 1 PHE H 146 PRO H 147 0 -9.02 CISPEP 2 GLU H 148 PRO H 149 0 1.42 CISPEP 3 SER L 7 PRO L 8 0 -3.06 CISPEP 4 THR L 94 PRO L 95 0 9.44 CISPEP 5 TYR L 140 PRO L 141 0 2.21 CRYST1 62.353 84.775 90.003 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016038 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011111 0.00000