HEADER OXIDOREDUCTASE 23-NOV-15 5EX8 TITLE STRUCTURE OF P450 STAF FROM GLYCOPEPTIDE ANTIBIOTIC A47934 TITLE 2 BIOSYNTHESIS; ETHYLENE GLYCOL CRYO COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STAF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES TOYOCAENSIS; SOURCE 3 ORGANISM_TAXID: 55952; SOURCE 4 GENE: BU52_01275; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS CYTOCHROME P450, MONOOXYGENASE, PHENOLIC COUPLING, GLYCOPEPTIDE KEYWDS 2 ANTIBIOTIC BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CRYLE,V.ULRICH REVDAT 3 10-JAN-24 5EX8 1 REMARK REVDAT 2 01-MAR-17 5EX8 1 JRNL REVDAT 1 11-JAN-17 5EX8 0 JRNL AUTH V.ULRICH,C.BRIEKE,M.J.CRYLE JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERISATION OF THE SECOND JRNL TITL 2 OXIDATIVE CROSSLINKING STEP DURING THE BIOSYNTHESIS OF THE JRNL TITL 3 GLYCOPEPTIDE ANTIBIOTIC A47934. JRNL REF BEILSTEIN J ORG CHEM V. 12 2849 2016 JRNL REFN ISSN 1860-5397 JRNL PMID 28144358 JRNL DOI 10.3762/BJOC.12.284 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3502 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4757 ; 1.193 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 5.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;29.865 ;22.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 559 ;15.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2714 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2101 ; 0.437 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3398 ; 0.843 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 1.441 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1347 ; 2.346 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -22 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0505 5.3740 -16.2113 REMARK 3 T TENSOR REMARK 3 T11: 0.2622 T22: 0.1944 REMARK 3 T33: 0.2498 T12: 0.0491 REMARK 3 T13: 0.0398 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.5903 L22: 2.0573 REMARK 3 L33: 6.9453 L12: -0.6071 REMARK 3 L13: 1.9984 L23: -2.5311 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.1401 S13: -0.0192 REMARK 3 S21: -0.2132 S22: 0.2673 S23: 0.4924 REMARK 3 S31: -0.1043 S32: -0.5669 S33: -0.2289 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9617 7.7415 0.3234 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.0566 REMARK 3 T33: 0.2152 T12: -0.0016 REMARK 3 T13: 0.0948 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.4829 L22: 2.7067 REMARK 3 L33: 3.4195 L12: -0.2805 REMARK 3 L13: -1.1342 L23: -0.2697 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: 0.1445 S13: 0.3743 REMARK 3 S21: 0.1457 S22: 0.0996 S23: 0.5551 REMARK 3 S31: -0.4416 S32: -0.3364 S33: -0.1938 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 58.0749 -19.2526 4.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.0228 REMARK 3 T33: 0.0728 T12: -0.0291 REMARK 3 T13: -0.0344 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 5.5665 L22: 1.4681 REMARK 3 L33: 2.8387 L12: -0.8910 REMARK 3 L13: -2.9289 L23: 0.7962 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: -0.2366 S13: -0.1338 REMARK 3 S21: 0.2874 S22: -0.0120 S23: 0.1041 REMARK 3 S31: 0.1618 S32: 0.1753 S33: -0.0820 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6776 -25.2578 -0.4751 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0707 REMARK 3 T33: 0.1286 T12: -0.0350 REMARK 3 T13: -0.0055 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.6870 L22: 1.4937 REMARK 3 L33: 5.6425 L12: -0.0747 REMARK 3 L13: -2.9454 L23: 0.5602 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: 0.1956 S13: -0.1471 REMARK 3 S21: -0.0501 S22: 0.0432 S23: -0.0108 REMARK 3 S31: 0.2277 S32: -0.2216 S33: -0.1159 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 64.8726 -2.5308 3.3787 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.0642 REMARK 3 T33: 0.0230 T12: -0.0712 REMARK 3 T13: 0.0303 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 2.2666 L22: 2.7664 REMARK 3 L33: 1.6922 L12: -0.5974 REMARK 3 L13: -0.4933 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -0.2320 S13: 0.1982 REMARK 3 S21: 0.3733 S22: 0.0429 S23: -0.0442 REMARK 3 S31: -0.2249 S32: 0.2413 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 327 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): 69.8562 -11.1764 0.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.1150 REMARK 3 T33: 0.0573 T12: -0.0485 REMARK 3 T13: -0.0356 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 4.2318 L22: 2.5487 REMARK 3 L33: 2.3977 L12: -1.6592 REMARK 3 L13: -1.2536 L23: 0.3931 REMARK 3 S TENSOR REMARK 3 S11: 0.1197 S12: -0.2144 S13: 0.0671 REMARK 3 S21: 0.2022 S22: 0.0418 S23: -0.2039 REMARK 3 S31: -0.1395 S32: 0.5064 S33: -0.1615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5EX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3O1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NH4PO4, 0.3 M K2HPO4, 0.1 M REMARK 280 NH4PO4 CITRATE (PH 4.2), PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.21667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.43333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.43333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.21667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 LYS A -24 REMARK 465 PRO A -23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 329 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 -116.61 52.40 REMARK 500 PHE A 140 -64.33 -124.19 REMARK 500 THR A 277 67.58 34.27 REMARK 500 LYS A 329 -12.08 63.80 REMARK 500 ALA A 330 -53.43 79.41 REMARK 500 GLU A 331 -128.41 83.42 REMARK 500 PHE A 382 100.80 -11.87 REMARK 500 PHE A 382 101.33 -12.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 767 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 6.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 342 SG REMARK 620 2 HEM A 401 NA 93.8 REMARK 620 3 HEM A 401 NB 86.1 90.8 REMARK 620 4 HEM A 401 NC 87.2 178.4 88.1 REMARK 620 5 HEM A 401 ND 96.9 89.2 177.0 91.8 REMARK 620 6 EDO A 402 O1 173.2 86.4 87.1 92.4 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 417 DBREF 5EX8 A 1 391 UNP Q8KLL7 Q8KLL7_STRTO 1 391 SEQADV 5EX8 MET A -32 UNP Q8KLL7 INITIATING METHIONINE SEQADV 5EX8 HIS A -31 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 HIS A -30 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 HIS A -29 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 HIS A -28 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 HIS A -27 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 HIS A -26 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 GLY A -25 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 LYS A -24 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 PRO A -23 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 ILE A -22 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 PRO A -21 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 ASN A -20 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 PRO A -19 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 LEU A -18 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 LEU A -17 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 GLY A -16 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 LEU A -15 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 ASP A -14 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 SER A -13 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 THR A -12 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 GLU A -11 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 ASN A -10 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 LEU A -9 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 TYR A -8 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 PHE A -7 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 GLN A -6 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 GLY A -5 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 ILE A -4 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 ASP A -3 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 PRO A -2 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 PHE A -1 UNP Q8KLL7 EXPRESSION TAG SEQADV 5EX8 THR A 0 UNP Q8KLL7 EXPRESSION TAG SEQRES 1 A 424 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 A 424 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 A 424 GLN GLY ILE ASP PRO PHE THR MET PHE GLU GLU ILE ASN SEQRES 4 A 424 VAL VAL ARG ALA SER GLN LEU HIS ARG ARG ASP ARG PHE SEQRES 5 A 424 ASP PRO VAL PRO GLU LEU HIS SER LEU MET LYS GLU GLY SEQRES 6 A 424 GLY LEU THR VAL LEU GLY THR GLU ASP SER THR GLU GLY SEQRES 7 A 424 ARG THR ALA TRP LEU ALA THR GLY ILE ASP GLU VAL ARG SEQRES 8 A 424 GLN VAL LEU GLY SER ASP LYS PHE SER ALA ARG LEU LEU SEQRES 9 A 424 TYR GLY GLY THR ALA ALA GLY ILE THR TRP PRO GLY PHE SEQRES 10 A 424 LEU THR GLN TYR ASP PRO PRO GLU HIS THR ARG LEU ARG SEQRES 11 A 424 ARG MET VAL VAL PRO ALA PHE SER HIS ARG ARG MET GLN SEQRES 12 A 424 LYS PHE ARG PRO ARG VAL GLU GLN ILE VAL GLN ASP SER SEQRES 13 A 424 LEU ASP THR ILE GLU SER LEU GLY GLY PRO VAL ASP PHE SEQRES 14 A 424 VAL PRO HIS PHE GLY TRP ALA ILE ALA THR PRO ALA THR SEQRES 15 A 424 CYS ASP PHE LEU GLY ILE PRO ARG ASP ASP GLN ALA ASP SEQRES 16 A 424 LEU ALA ARG ILE LEU LEU ALA SER ARG THR ASP ARG SER SEQRES 17 A 424 ASP LYS ARG ARG THR ALA ALA GLY ASN LYS PHE MET THR SEQRES 18 A 424 TYR MET LYS GLN HIS VAL ALA GLN SER ARG ARG GLY SER SEQRES 19 A 424 GLY ASP ASP LEU PHE GLY ILE VAL GLY ARG GLU ASN GLY SEQRES 20 A 424 ASP ALA ILE THR ASP ALA GLU LEU THR GLY VAL ALA ALA SEQRES 21 A 424 PHE VAL MET GLY ALA ALA ALA ASP GLN VAL ALA ARG LEU SEQRES 22 A 424 LEU ALA ALA GLY ALA TRP LEU MET VAL GLU GLN PRO ALA SEQRES 23 A 424 GLN PHE ALA LEU LEU ARG GLU LYS PRO GLU THR VAL PRO SEQRES 24 A 424 GLU TRP LEU ASP GLU THR MET ARG TYR LEU THR THR ASP SEQRES 25 A 424 GLU LYS THR HIS PRO ARG VAL ALA THR GLN ASP VAL ARG SEQRES 26 A 424 ILE GLY ASN GLN LEU VAL LYS ALA GLY ASP THR VAL THR SEQRES 27 A 424 CYS SER LEU LEU ALA ALA ASN ARG PRO ASN TYR PRO SER SEQRES 28 A 424 ALA GLU ASP GLU PHE ASP ILE THR ARG GLU LYS ALA GLU SEQRES 29 A 424 HIS LEU ALA PHE GLY HIS GLY ILE HIS HIS CYS LEU GLY SEQRES 30 A 424 ARG ALA MET ALA GLU LEU MET PHE LYS VAL SER ILE PRO SEQRES 31 A 424 ALA LEU ALA HIS ARG PHE PRO THR LEU ARG LEU ALA ASP SEQRES 32 A 424 PRO GLN ARG GLU ILE THR LEU GLY PRO PRO PRO PHE ASP SEQRES 33 A 424 VAL GLU ALA LEU LEU LEU ASP TRP HET HEM A 401 43 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EDO 1,2-ETHANEDIOL HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 EDO 16(C2 H6 O2) FORMUL 19 HOH *268(H2 O) HELIX 1 AA1 ASP A -14 LEU A -9 1 6 HELIX 2 AA2 ASP A -3 LEU A 13 1 17 HELIX 3 AA3 VAL A 22 GLU A 31 1 10 HELIX 4 AA4 GLY A 53 SER A 63 1 11 HELIX 5 AA5 ALA A 68 TYR A 72 5 5 HELIX 6 AA6 PHE A 84 TYR A 88 5 5 HELIX 7 AA7 PRO A 91 VAL A 101 1 11 HELIX 8 AA8 PRO A 102 PHE A 104 5 3 HELIX 9 AA9 SER A 105 GLY A 131 1 27 HELIX 10 AB1 PHE A 136 PHE A 140 1 5 HELIX 11 AB2 PHE A 140 LEU A 153 1 14 HELIX 12 AB3 PRO A 156 ASP A 158 5 3 HELIX 13 AB4 ASP A 159 ASP A 173 1 15 HELIX 14 AB5 SER A 175 ARG A 198 1 24 HELIX 15 AB6 ASP A 204 GLY A 214 1 11 HELIX 16 AB7 ASP A 215 ILE A 217 5 3 HELIX 17 AB8 THR A 218 GLY A 231 1 14 HELIX 18 AB9 GLY A 231 GLN A 251 1 21 HELIX 19 AC1 GLN A 251 LYS A 261 1 11 HELIX 20 AC2 PRO A 262 VAL A 265 5 4 HELIX 21 AC3 GLU A 267 THR A 277 1 11 HELIX 22 AC4 SER A 307 ARG A 313 1 7 HELIX 23 AC5 GLY A 344 PHE A 363 1 20 SHEET 1 AA1 2 ARG A 16 ASP A 17 0 SHEET 2 AA1 2 ASP A 20 PRO A 21 -1 O ASP A 20 N ASP A 17 SHEET 1 AA2 5 LEU A 34 THR A 39 0 SHEET 2 AA2 5 THR A 47 ALA A 51 -1 O ALA A 48 N GLY A 38 SHEET 3 AA2 5 THR A 303 CYS A 306 1 O THR A 303 N TRP A 49 SHEET 4 AA2 5 ARG A 285 ALA A 287 -1 N ARG A 285 O VAL A 304 SHEET 5 AA2 5 PHE A 66 SER A 67 -1 N SER A 67 O VAL A 286 SHEET 1 AA3 3 VAL A 134 ASP A 135 0 SHEET 2 AA3 3 LEU A 388 ASP A 390 -1 O LEU A 389 N VAL A 134 SHEET 3 AA3 3 ARG A 367 LEU A 368 -1 N ARG A 367 O ASP A 390 SHEET 1 AA4 2 VAL A 291 ILE A 293 0 SHEET 2 AA4 2 GLN A 296 VAL A 298 -1 O VAL A 298 N VAL A 291 LINK SG CYS A 342 FE HEM A 401 1555 1555 2.24 LINK FE HEM A 401 O1 EDO A 402 1555 1555 2.31 CISPEP 1 PRO A 90 PRO A 91 0 -0.72 CISPEP 2 GLY A 132 PRO A 133 0 -0.51 CISPEP 3 TYR A 316 PRO A 317 0 -9.09 CISPEP 4 GLU A 331 HIS A 332 0 -17.71 CISPEP 5 PRO A 380 PRO A 381 0 2.62 SITE 1 AC1 23 LEU A 85 THR A 86 HIS A 93 ARG A 97 SITE 2 AC1 23 PHE A 228 ALA A 233 GLN A 236 VAL A 237 SITE 3 AC1 23 ASP A 279 THR A 282 HIS A 283 ARG A 285 SITE 4 AC1 23 LEU A 308 ALA A 334 PHE A 335 GLY A 336 SITE 5 AC1 23 HIS A 340 CYS A 342 GLY A 344 EDO A 402 SITE 6 AC1 23 EDO A 407 HOH A 557 HOH A 566 SITE 1 AC2 8 LEU A -15 PHE A 228 ALA A 232 ALA A 233 SITE 2 AC2 8 GLN A 236 HEM A 401 EDO A 407 HOH A 757 SITE 1 AC3 4 HIS A 337 GLY A 338 HOH A 541 HOH A 580 SITE 1 AC4 5 ARG A 18 GLU A 250 LEU A 368 PRO A 371 SITE 2 AC4 5 ARG A 373 SITE 1 AC5 2 ASP A 162 ILE A 166 SITE 1 AC6 3 ARG A 259 HIS A 361 PRO A 364 SITE 1 AC7 7 PHE A 228 GLN A 236 ASP A 279 HIS A 283 SITE 2 AC7 7 HEM A 401 EDO A 402 HOH A 757 SITE 1 AC8 5 ASP A 370 ARG A 373 GLU A 374 LEU A 388 SITE 2 AC8 5 HOH A 509 SITE 1 AC9 5 VAL A 137 TRP A 142 ASP A 235 ARG A 239 SITE 2 AC9 5 HOH A 505 SITE 1 AD1 5 ARG A 58 GLN A 59 GLY A 62 SER A 63 SITE 2 AD1 5 HIS A 337 SITE 1 AD2 5 GLN A 110 ARG A 113 LYS A 353 HOH A 536 SITE 2 AD2 5 HOH A 574 SITE 1 AD3 3 ARG A 115 ASP A 122 ARG A 157 SITE 1 AD4 2 ASP A 64 LYS A 65 SITE 1 AD5 5 ILE A 79 TYR A 88 GLU A 221 HOH A 529 SITE 2 AD5 5 HOH A 693 SITE 1 AD6 6 LEU A -18 TRP A 81 PRO A 82 MET A 187 SITE 2 AD6 6 ALA A 220 GLY A 224 SITE 1 AD7 4 GLY A 131 GLY A 132 ASP A 390 TRP A 391 SITE 1 AD8 2 ARG A 165 SER A 201 CRYST1 110.050 110.050 93.650 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009087 0.005246 0.000000 0.00000 SCALE2 0.000000 0.010493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010678 0.00000