HEADER APOPTOSIS 24-NOV-15 5EXQ TITLE HUMAN CYTOCHROME C Y48H COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYCS, CYC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBTR(HUMANCC) KEYWDS CYTOCHROME C, HEME, APOPTOSIS, TYROSINE TO HISTIDINE SUBSTITUTION, KEYWDS 2 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,G.N.L.JAMESON,E.C.LEDGERWOOD,S.M.WILBANKS REVDAT 3 27-SEP-23 5EXQ 1 REMARK REVDAT 2 03-FEB-21 5EXQ 1 COMPND JRNL REMARK HET REVDAT 2 2 1 HETNAM HETSYN FORMUL LINK REVDAT 2 3 1 ATOM REVDAT 1 30-NOV-16 5EXQ 0 JRNL AUTH M.FELLNER,R.PARAKRA,K.O.MCDONALD,I.KASS,G.N.L.JAMESON, JRNL AUTH 2 S.M.WILBANKS,E.C.LEDGERWOOD JRNL TITL ALTERED STRUCTURE AND DYNAMICS OF PATHOGENIC CYTOCHROME C JRNL TITL 2 VARIANTS CORRELATE WITH INCREASED APOPTOTIC ACTIVITY. JRNL REF BIOCHEM.J. 2021 JRNL REFN ESSN 1470-8728 JRNL PMID 33480393 JRNL DOI 10.1042/BCJ20200793 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10-2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 26362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0694 - 4.1832 0.97 2947 100 0.1440 0.1482 REMARK 3 2 4.1832 - 3.3204 0.98 2842 243 0.1449 0.1697 REMARK 3 3 3.3204 - 2.9007 0.99 2961 187 0.1654 0.1916 REMARK 3 4 2.9007 - 2.6355 0.99 2974 159 0.1621 0.1634 REMARK 3 5 2.6355 - 2.4466 0.99 2921 207 0.1630 0.1740 REMARK 3 6 2.4466 - 2.3024 1.00 2974 156 0.1661 0.1784 REMARK 3 7 2.3024 - 2.1871 0.31 917 57 0.1954 0.2105 REMARK 3 8 2.1871 - 2.0919 0.90 2704 134 0.1653 0.1634 REMARK 3 9 2.0919 - 2.0113 0.91 2788 120 0.1821 0.2153 REMARK 3 10 2.0113 - 1.9419 0.88 2478 118 0.1803 0.2354 REMARK 3 11 1.9419 - 1.8812 0.77 836 32 0.2727 0.2868 REMARK 3 12 1.8812 - 1.8274 0.92 2740 158 0.1957 0.2668 REMARK 3 13 1.8274 - 1.7793 0.93 2814 146 0.2011 0.2307 REMARK 3 14 1.7793 - 1.7359 0.93 2788 140 0.2094 0.2472 REMARK 3 15 1.7359 - 1.6964 0.93 2759 154 0.2171 0.2285 REMARK 3 16 1.6964 - 1.6603 0.93 2827 145 0.2318 0.3042 REMARK 3 17 1.6603 - 1.6271 0.94 2781 119 0.2422 0.2594 REMARK 3 18 1.6271 - 1.5964 0.87 2616 161 0.2472 0.2984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1808 REMARK 3 ANGLE : 0.950 2439 REMARK 3 CHIRALITY : 0.052 235 REMARK 3 PLANARITY : 0.010 301 REMARK 3 DIHEDRAL : 16.934 686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2507 -1.3552 -6.5092 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.2701 REMARK 3 T33: 0.0944 T12: 0.0188 REMARK 3 T13: -0.0249 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 5.5834 L22: 5.3615 REMARK 3 L33: 4.2232 L12: 1.6812 REMARK 3 L13: 0.1166 L23: 0.3804 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -1.1373 S13: 0.1726 REMARK 3 S21: 0.3175 S22: -0.0910 S23: -0.1653 REMARK 3 S31: -0.1476 S32: 0.2203 S33: 0.0345 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1497 -12.5999 -17.8794 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.0858 REMARK 3 T33: 0.1566 T12: 0.0205 REMARK 3 T13: 0.0124 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 5.5755 L22: 2.0028 REMARK 3 L33: 4.6086 L12: 1.0546 REMARK 3 L13: 2.6959 L23: 0.1284 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.0193 S13: -0.5411 REMARK 3 S21: 0.0502 S22: 0.0482 S23: -0.1813 REMARK 3 S31: 0.4348 S32: 0.1945 S33: -0.0984 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5780 -0.7570 -22.7661 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.0910 REMARK 3 T33: 0.1282 T12: -0.0099 REMARK 3 T13: 0.0450 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 7.3006 L22: 6.0050 REMARK 3 L33: 9.1502 L12: 0.8003 REMARK 3 L13: 4.5279 L23: -0.3044 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: 0.3381 S13: 0.3822 REMARK 3 S21: -0.1658 S22: 0.0918 S23: -0.4408 REMARK 3 S31: -0.2149 S32: 0.2701 S33: -0.2052 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2356 -0.1827 -19.9444 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0787 REMARK 3 T33: 0.1143 T12: -0.0006 REMARK 3 T13: 0.0046 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 5.6269 L22: 0.9786 REMARK 3 L33: 6.0272 L12: 0.8005 REMARK 3 L13: 0.8534 L23: 1.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0938 S13: 0.4949 REMARK 3 S21: -0.0117 S22: 0.1667 S23: 0.0162 REMARK 3 S31: -0.1512 S32: 0.0227 S33: -0.0978 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1499 2.2384 -11.7524 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.2306 REMARK 3 T33: 0.2154 T12: -0.0411 REMARK 3 T13: 0.0245 T23: -0.1106 REMARK 3 L TENSOR REMARK 3 L11: 8.6471 L22: 7.2745 REMARK 3 L33: 9.4244 L12: -0.1267 REMARK 3 L13: 1.1581 L23: -3.7068 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: -0.4779 S13: 0.6346 REMARK 3 S21: 0.1630 S22: -0.0306 S23: -0.2447 REMARK 3 S31: -0.3486 S32: 0.9292 S33: -0.0385 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3393 15.6051 -10.3101 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1247 REMARK 3 T33: 0.1422 T12: 0.0361 REMARK 3 T13: 0.0009 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 9.4347 L22: 6.7503 REMARK 3 L33: 2.1250 L12: -0.9296 REMARK 3 L13: 2.2134 L23: 3.7737 REMARK 3 S TENSOR REMARK 3 S11: 0.2168 S12: -0.3635 S13: 0.4297 REMARK 3 S21: 0.0533 S22: -0.1201 S23: -0.0036 REMARK 3 S31: -0.9753 S32: -0.6460 S33: -0.0738 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0018 4.1406 -15.4404 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.1230 REMARK 3 T33: 0.1046 T12: -0.0010 REMARK 3 T13: -0.0274 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 8.9994 L22: 6.2546 REMARK 3 L33: 5.3180 L12: -0.5549 REMARK 3 L13: -0.3080 L23: 4.1955 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.1380 S13: -0.2293 REMARK 3 S21: -0.1596 S22: -0.1750 S23: 0.3698 REMARK 3 S31: 0.0850 S32: -0.3788 S33: 0.0658 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4450 -1.9170 -12.9745 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.0771 REMARK 3 T33: 0.1036 T12: -0.0214 REMARK 3 T13: 0.0189 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.4868 L22: 3.8648 REMARK 3 L33: 7.8165 L12: 2.4633 REMARK 3 L13: -0.4673 L23: 1.1207 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.1639 S13: -0.0564 REMARK 3 S21: 0.1802 S22: -0.0693 S23: 0.1426 REMARK 3 S31: 0.4353 S32: -0.3571 S33: 0.0177 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4306 -6.1086 -18.8112 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.0758 REMARK 3 T33: 0.1291 T12: -0.0109 REMARK 3 T13: -0.0059 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.5081 L22: 1.4635 REMARK 3 L33: 4.6461 L12: -0.0711 REMARK 3 L13: -0.5686 L23: 1.5863 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: 0.0261 S13: -0.4075 REMARK 3 S21: -0.0312 S22: 0.0391 S23: 0.1615 REMARK 3 S31: 0.2829 S32: -0.1685 S33: 0.0510 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8168 4.9520 -9.3742 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.1300 REMARK 3 T33: 0.0685 T12: 0.0086 REMARK 3 T13: -0.0037 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.7710 L22: 9.7700 REMARK 3 L33: 8.0658 L12: -1.4746 REMARK 3 L13: -0.4962 L23: -1.2201 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: -0.4630 S13: 0.0918 REMARK 3 S21: 0.4737 S22: 0.1710 S23: -0.0517 REMARK 3 S31: -0.1372 S32: 0.0005 S33: -0.0411 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0596 8.2395 -19.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0777 REMARK 3 T33: 0.0662 T12: -0.0104 REMARK 3 T13: 0.0278 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.9277 L22: 5.6000 REMARK 3 L33: 6.4401 L12: -0.6095 REMARK 3 L13: 1.5085 L23: 1.5579 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.0614 S13: 0.1763 REMARK 3 S21: -0.0001 S22: 0.0308 S23: -0.2000 REMARK 3 S31: -0.2482 S32: 0.1579 S33: -0.0815 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3591 10.2097 -5.7175 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1179 REMARK 3 T33: 0.0670 T12: 0.0404 REMARK 3 T13: 0.0119 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 7.9663 L22: 8.4310 REMARK 3 L33: 9.0807 L12: 4.2897 REMARK 3 L13: -1.2775 L23: -0.7385 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: -0.3829 S13: 0.1930 REMARK 3 S21: 0.3703 S22: -0.0970 S23: 0.1425 REMARK 3 S31: -0.2728 S32: -0.3204 S33: -0.0392 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 54.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 3ZCF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS OF 1 MICROL OF 29.5 REMARK 280 MG/ML OF REDUCED PROTEIN AND 2 MICROL RESERVOIR BUFFER WERE REMARK 280 ALLOWED TO EQUILIBRATE ABOVE THE RESERVOIR BUFFER (32% (W/V) REMARK 280 POLYETHYLENE GLYCOL 5000, 50 MM LITHIUMSULFATE, 50 MM TRIS-HCL REMARK 280 PH 8.5). THE PROTEIN SOLUTION WAS 17.5 MM SODIUM PHOSPHATE, 25 REMARK 280 MM SODIUM CHLORIDE, 15 MM SODIUM DITHIONITE (PH 7.6)., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.98250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 411 O HOH A 445 1.90 REMARK 500 O HOH A 310 O HOH A 438 1.99 REMARK 500 O HOH B 455 O HOH B 492 2.00 REMARK 500 O HOH B 446 O HOH B 499 2.04 REMARK 500 O HOH B 486 O HOH B 488 2.05 REMARK 500 O HOH B 447 O HOH B 475 2.06 REMARK 500 O HOH B 434 O HOH B 446 2.07 REMARK 500 NZ LYS A 73 O HOH A 301 2.15 REMARK 500 O HOH B 379 O HOH B 472 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -138.77 -124.06 REMARK 500 ASN A 70 88.57 -161.84 REMARK 500 LYS B 27 -139.51 -121.88 REMARK 500 ASN B 70 88.26 -164.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 93.3 REMARK 620 3 HEC A 201 NB 89.5 89.0 REMARK 620 4 HEC A 201 NC 89.2 177.2 89.9 REMARK 620 5 HEC A 201 ND 92.9 90.0 177.4 91.0 REMARK 620 6 MET A 80 SD 177.3 84.6 92.3 92.9 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 89.9 REMARK 620 3 HEC B 201 NB 90.1 89.0 REMARK 620 4 HEC B 201 NC 92.6 177.2 89.9 REMARK 620 5 HEC B 201 ND 92.3 90.0 177.4 91.0 REMARK 620 6 MET B 80 SD 173.3 83.6 91.7 93.9 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 14 DBREF 5EXQ A 1 104 UNP P99999 CYC_HUMAN 2 105 DBREF 5EXQ B 1 104 UNP P99999 CYC_HUMAN 2 105 SEQADV 5EXQ HIS A 48 UNP P99999 TYR 49 ENGINEERED MUTATION SEQADV 5EXQ HIS B 48 UNP P99999 TYR 49 ENGINEERED MUTATION SEQRES 1 A 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE ILE MET LYS SEQRES 2 A 104 CYS SER GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 A 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG LYS SEQRES 4 A 104 THR GLY GLN ALA PRO GLY TYR SER HIS THR ALA ALA ASN SEQRES 5 A 104 LYS ASN LYS GLY ILE ILE TRP GLY GLU ASP THR LEU MET SEQRES 6 A 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 A 104 LYS MET ILE PHE VAL GLY ILE LYS LYS LYS GLU GLU ARG SEQRES 8 A 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU SEQRES 1 B 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE ILE MET LYS SEQRES 2 B 104 CYS SER GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 B 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG LYS SEQRES 4 B 104 THR GLY GLN ALA PRO GLY TYR SER HIS THR ALA ALA ASN SEQRES 5 B 104 LYS ASN LYS GLY ILE ILE TRP GLY GLU ASP THR LEU MET SEQRES 6 B 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 B 104 LYS MET ILE PHE VAL GLY ILE LYS LYS LYS GLU GLU ARG SEQRES 8 B 104 ALA ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU HET HEC A 201 43 HET HEC B 201 43 HET SO4 B 202 5 HETNAM HEC HEME C HETNAM SO4 SULFATE ION FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *368(H2 O) HELIX 1 AA1 ASP A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 LYS A 55 1 7 HELIX 3 AA3 GLY A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 HELIX 6 AA6 ASP B 2 CYS B 14 1 13 HELIX 7 AA7 THR B 49 LYS B 55 1 7 HELIX 8 AA8 GLY B 60 ASN B 70 1 11 HELIX 9 AA9 ASN B 70 ILE B 75 1 6 HELIX 10 AB1 LYS B 87 THR B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.92 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.98 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.93 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.86 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.02 LINK SD MET A 80 FE HEC A 201 1555 1555 2.25 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 1.98 LINK SD MET B 80 FE HEC B 201 1555 1555 2.29 SITE 1 AC1 21 LYS A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 21 THR A 28 PRO A 30 ARG A 38 THR A 40 SITE 3 AC1 21 GLY A 41 TYR A 46 HIS A 48 THR A 49 SITE 4 AC1 21 ASN A 52 TRP A 59 THR A 78 LYS A 79 SITE 5 AC1 21 MET A 80 ILE A 81 PHE A 82 HOH A 308 SITE 6 AC1 21 LYS B 55 SITE 1 AC2 6 PHE A 36 GLY A 60 GLU A 61 LYS A 99 SITE 2 AC2 6 HOH B 315 HOH B 323 SITE 1 AC3 22 LYS B 13 CYS B 14 SER B 15 GLN B 16 SITE 2 AC3 22 HIS B 18 LYS B 27 THR B 28 GLY B 29 SITE 3 AC3 22 PRO B 30 ARG B 38 THR B 40 GLY B 41 SITE 4 AC3 22 TYR B 46 HIS B 48 THR B 49 ASN B 52 SITE 5 AC3 22 TRP B 59 THR B 78 LYS B 79 MET B 80 SITE 6 AC3 22 PHE B 82 HOH B 312 SITE 1 AC4 21 PHE B 10 LYS B 13 SER B 15 GLN B 16 SITE 2 AC4 21 CYS B 17 HIS B 18 THR B 28 PRO B 30 SITE 3 AC4 21 ARG B 38 THR B 40 GLY B 41 TYR B 46 SITE 4 AC4 21 HIS B 48 THR B 49 ASN B 52 TRP B 59 SITE 5 AC4 21 THR B 78 LYS B 79 MET B 80 PHE B 82 SITE 6 AC4 21 HOH B 312 CRYST1 56.791 35.965 59.937 90.00 115.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017608 0.000000 0.008449 0.00000 SCALE2 0.000000 0.027805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018505 0.00000