HEADER VIRAL PROTEIN 24-NOV-15 5EXZ TITLE CRYSTAL STRUCTURE OF PURIFIED RECOMBINANT CPV1 POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-POLYHEDRIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYPOVIRUS 1; SOURCE 3 ORGANISM_COMMON: BMCPV; SOURCE 4 ORGANISM_TAXID: 110829; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS IN VIVO CRYSTAL, VIRAL PROTEIN, POLYHEDRIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BOUDES,D.GARRIGA,F.COULIBALY REVDAT 2 27-SEP-23 5EXZ 1 REMARK SEQADV LINK REVDAT 1 25-MAY-16 5EXZ 0 JRNL AUTH M.BOUDES,D.GARRIGA,A.FRYGA,T.CARADOC-DAVIES,F.COULIBALY JRNL TITL A PIPELINE FOR STRUCTURE DETERMINATION OF IN VIVO-GROWN JRNL TITL 2 CRYSTALS USING IN CELLULO DIFFRACTION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 576 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27050136 JRNL DOI 10.1107/S2059798316002369 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 13732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2753 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1811 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2456 REMARK 3 BIN R VALUE (WORKING SET) : 0.1744 REMARK 3 BIN FREE R VALUE : 0.2394 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.79 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 297 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.216 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.198 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.160 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2157 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2950 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 955 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 60 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 307 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2157 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 262 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2778 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EXZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.26800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER 2.10.1 REMARK 200 STARTING MODEL: 2OH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALS USED TO DETERMINE THIS REMARK 280 STRUCTURE WERE DIRECTLY PURIFIED FROM CELLS, IN VIVO REMARK 280 CRYSTALLIZATION IN THE CYTOPLASM OF THE CELL, IN CELL, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.58500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.58500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.58500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.58500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.58500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.58500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.58500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.58500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.58500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.58500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.58500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.58500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.58500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 78730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 128260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -612.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 103.17000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 103.17000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 103.17000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 103.17000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 103.17000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.17000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 103.17000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 103.17000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 103.17000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 103.17000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 103.17000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 103.17000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 103.17000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 103.17000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 103.17000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 103.17000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 103.17000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 103.17000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 571 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -47.24 66.77 REMARK 500 GLU A 135 -55.44 68.56 REMARK 500 ASN A 185 85.66 -151.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CTP A 306 O3G REMARK 620 2 CTP A 306 O2A 92.1 REMARK 620 3 CTP A 306 O2B 93.8 89.2 REMARK 620 4 HOH A 474 O 92.5 84.6 171.4 REMARK 620 5 HOH A 529 O 91.4 164.9 105.2 80.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 305 O3G REMARK 620 2 ATP A 305 O1A 82.2 REMARK 620 3 ATP A 305 O1B 90.3 93.2 REMARK 620 4 HOH A 401 O 133.6 58.0 70.9 REMARK 620 5 HOH A 404 O 95.3 82.9 172.6 101.7 REMARK 620 6 HOH A 448 O 98.0 171.0 95.8 125.1 88.1 REMARK 620 7 HOH A 479 O 166.7 105.9 99.5 58.9 75.7 72.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A 307 O1B REMARK 620 2 GTP A 307 O1A 69.1 REMARK 620 3 GTP A 307 O3G 68.8 59.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTP A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EXY RELATED DB: PDB REMARK 900 SAME STRUCTURE FROM DATA COLLECTED IN CELLULO CRYSTALS DBREF 5EXZ A 2 248 UNP P11041 PYHD_CPVBM 2 248 SEQADV 5EXZ ACE A 1 UNP P11041 ACETYLATION SEQRES 1 A 248 ACE ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 248 GLY ARG GLU GLN ARG LEU PHE ASN SER GLU GLN TYR ASN SEQRES 3 A 248 TYR ASN ASN SER LEU ASN GLY GLU VAL SER VAL TRP VAL SEQRES 4 A 248 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ILE ASN SEQRES 5 A 248 LYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU THR PHE SEQRES 6 A 248 LYS ALA LEU LYS GLU TYR ARG GLU GLY GLN HIS ASN ASP SEQRES 7 A 248 SER TYR ASP GLU TYR GLU VAL ASN GLN SER ILE TYR TYR SEQRES 8 A 248 PRO ASN GLY GLY ASP ALA ARG LYS PHE HIS SER ASN ALA SEQRES 9 A 248 LYS PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER VAL SEQRES 10 A 248 ASN VAL ARG THR ILE LYS MET ALA LYS GLY ASN ALA VAL SEQRES 11 A 248 SER VAL PRO ASP GLU TYR LEU GLN ARG SER HIS PRO TRP SEQRES 12 A 248 GLU ALA THR GLY ILE LYS TYR ARG LYS ILE LYS ARG ASP SEQRES 13 A 248 GLY GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU PRO SEQRES 14 A 248 HIS GLU TYR ASN SER ILE SER LEU ALA VAL SER GLY VAL SEQRES 15 A 248 HIS LYS ASN PRO SER SER TYR ASN VAL GLY SER ALA HIS SEQRES 16 A 248 ASN VAL MET ASP VAL PHE GLN SER CYS ASP LEU ALA LEU SEQRES 17 A 248 ARG PHE CYS ASN ARG TYR TRP ALA GLU LEU GLU LEU VAL SEQRES 18 A 248 ASN HIS TYR ILE SER PRO ASN ALA TYR PRO TYR LEU ASP SEQRES 19 A 248 ILE ASN ASN HIS SER TYR GLY VAL ALA LEU SER ASN ARG SEQRES 20 A 248 GLN HET ACE A 1 3 HET CL A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET ATP A 305 31 HET CTP A 306 29 HET GTP A 307 32 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 1 ACE C2 H4 O FORMUL 2 CL CL 1- FORMUL 3 MG 3(MG 2+) FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 7 CTP C9 H16 N3 O14 P3 FORMUL 8 GTP C10 H16 N5 O14 P3 FORMUL 9 HOH *173(H2 O) HELIX 1 AA1 ASP A 11 SER A 30 1 20 HELIX 2 AA2 THR A 64 LYS A 69 1 6 HELIX 3 AA3 ASP A 78 TYR A 91 1 14 HELIX 4 AA4 ASN A 118 ILE A 122 5 5 HELIX 5 AA5 TYR A 136 SER A 140 5 5 HELIX 6 AA6 THR A 146 TYR A 150 5 5 HELIX 7 AA7 ASN A 196 ALA A 207 1 12 HELIX 8 AA8 ALA A 216 TYR A 224 1 9 SHEET 1 AA1 6 ARG A 151 ARG A 155 0 SHEET 2 AA1 6 GLU A 158 GLU A 167 -1 O SER A 163 N ARG A 151 SHEET 3 AA1 6 ALA A 108 PHE A 113 -1 N ILE A 111 O HIS A 164 SHEET 4 AA1 6 GLU A 34 TYR A 42 -1 N TYR A 40 O GLN A 110 SHEET 5 AA1 6 VAL A 48 GLN A 56 -1 O LEU A 49 N ALA A 41 SHEET 6 AA1 6 LEU A 208 TYR A 214 -1 O TYR A 214 N VAL A 48 SHEET 1 AA2 3 LYS A 58 GLU A 63 0 SHEET 2 AA2 3 SER A 176 VAL A 182 -1 O LEU A 177 N GLU A 63 SHEET 3 AA2 3 LYS A 123 GLY A 127 -1 N ALA A 125 O ALA A 178 SHEET 1 AA3 2 TYR A 232 LEU A 233 0 SHEET 2 AA3 2 SER A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 LINK C ACE A 1 N ALA A 2 1555 1555 1.34 LINK MG MG A 302 O3G CTP A 306 1555 1555 1.93 LINK MG MG A 302 O2A CTP A 306 1555 1555 2.15 LINK MG MG A 302 O2B CTP A 306 1555 1555 2.00 LINK MG MG A 302 O HOH A 474 1555 5555 2.23 LINK MG MG A 302 O HOH A 529 1555 1555 2.09 LINK MG MG A 303 O3G ATP A 305 1555 1555 2.00 LINK MG MG A 303 O1A ATP A 305 1555 1555 2.11 LINK MG MG A 303 O1B ATP A 305 1555 1555 2.05 LINK MG MG A 303 O HOH A 401 1555 1555 2.90 LINK MG MG A 303 O HOH A 404 1555 19554 2.26 LINK MG MG A 303 O HOH A 448 1555 19554 2.38 LINK MG MG A 303 O HOH A 479 1555 3655 2.42 LINK MG MG A 304 O1B GTP A 307 1555 1555 1.95 LINK MG MG A 304 O1A GTP A 307 1555 1555 2.87 LINK MG MG A 304 O3G GTP A 307 1555 1555 2.94 SITE 1 AC1 3 ALA A 2 LEU A 31 HOH A 528 SITE 1 AC2 3 CTP A 306 HOH A 474 HOH A 529 SITE 1 AC3 5 ATP A 305 HOH A 401 HOH A 404 HOH A 448 SITE 2 AC3 5 HOH A 479 SITE 1 AC4 1 GTP A 307 SITE 1 AC5 15 TYR A 25 LYS A 152 LYS A 154 ARG A 155 SITE 2 AC5 15 ASP A 156 GLY A 157 ILE A 159 LYS A 184 SITE 3 AC5 15 MG A 303 GTP A 307 HOH A 401 HOH A 404 SITE 4 AC5 15 HOH A 485 HOH A 532 HOH A 542 SITE 1 AC6 14 HIS A 76 ASN A 77 ASP A 78 SER A 79 SITE 2 AC6 14 TYR A 80 ASP A 81 ASP A 96 ARG A 98 SITE 3 AC6 14 MG A 302 HOH A 429 HOH A 474 HOH A 480 SITE 4 AC6 14 HOH A 504 HOH A 529 SITE 1 AC7 9 ASN A 9 ARG A 10 ARG A 18 HIS A 170 SITE 2 AC7 9 TYR A 172 ASN A 173 LYS A 184 MG A 304 SITE 3 AC7 9 ATP A 305 CRYST1 103.170 103.170 103.170 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009693 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009693 0.00000 HETATM 1 C ACE A 1 68.384 -10.859 9.459 1.00 9.89 C HETATM 2 O ACE A 1 67.809 -11.221 8.427 1.00 10.95 O HETATM 3 CH3 ACE A 1 69.579 -11.653 9.993 1.00 10.62 C