HEADER TRANSCRIPTION 24-NOV-15 5EY0 TITLE CRYSTAL STRUCTURE OF CODY FROM STAPHYLOCOCCUS AUREUS WITH GTP AND ILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-SENSING TRANSCRIPTIONAL PLEIOTROPIC REPRESSOR CODY; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN MU3 / ATCC SOURCE 3 700698); SOURCE 4 ORGANISM_TAXID: 418127; SOURCE 5 STRAIN: MU3 / ATCC 700698; SOURCE 6 GENE: CODY, SAHV_1245; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GTP-SENSING, PLEIOTROPIC TRANSCRIPTION REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.HAN,K.Y.HWANG REVDAT 4 08-NOV-23 5EY0 1 JRNL REMARK REVDAT 3 16-NOV-16 5EY0 1 JRNL REVDAT 2 21-SEP-16 5EY0 1 JRNL REVDAT 1 14-SEP-16 5EY0 0 JRNL AUTH A.R.HAN,H.R.KANG,J.SON,D.H.KWON,S.KIM,W.C.LEE,H.K.SONG, JRNL AUTH 2 M.J.SONG,K.Y.HWANG JRNL TITL THE STRUCTURE OF THE PLEIOTROPIC TRANSCRIPTION REGULATOR JRNL TITL 2 CODY PROVIDES INSIGHT INTO ITS GTP-SENSING MECHANISM JRNL REF NUCLEIC ACIDS RES. V. 44 9483 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596595 JRNL DOI 10.1093/NAR/GKW775 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 69602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9460 - 4.6087 0.98 3108 150 0.1694 0.2041 REMARK 3 2 4.6087 - 3.6601 0.97 2920 157 0.1424 0.1639 REMARK 3 3 3.6601 - 3.1981 0.95 2866 149 0.1525 0.1860 REMARK 3 4 3.1981 - 2.9059 0.94 2798 139 0.1711 0.2312 REMARK 3 5 2.9059 - 2.6978 0.94 2734 145 0.1679 0.1905 REMARK 3 6 2.6978 - 2.5388 0.93 2737 145 0.1682 0.2029 REMARK 3 7 2.5388 - 2.4117 0.93 2734 147 0.1754 0.2135 REMARK 3 8 2.4117 - 2.3068 0.93 2734 139 0.1705 0.2008 REMARK 3 9 2.3068 - 2.2180 0.93 2760 126 0.1632 0.1986 REMARK 3 10 2.2180 - 2.1415 0.94 2754 152 0.1687 0.1911 REMARK 3 11 2.1415 - 2.0746 0.94 2734 146 0.1752 0.2047 REMARK 3 12 2.0746 - 2.0153 0.95 2737 144 0.1790 0.2072 REMARK 3 13 2.0153 - 1.9622 0.95 2779 141 0.1835 0.2352 REMARK 3 14 1.9622 - 1.9144 0.94 2736 133 0.1907 0.2093 REMARK 3 15 1.9144 - 1.8709 0.95 2770 149 0.2007 0.2422 REMARK 3 16 1.8709 - 1.8310 0.95 2715 145 0.2033 0.2208 REMARK 3 17 1.8310 - 1.7944 0.94 2759 141 0.2210 0.2709 REMARK 3 18 1.7944 - 1.7606 0.95 2715 152 0.2317 0.2626 REMARK 3 19 1.7606 - 1.7291 0.95 2728 168 0.2260 0.2738 REMARK 3 20 1.7291 - 1.6998 0.93 2689 139 0.2476 0.2608 REMARK 3 21 1.6998 - 1.6724 0.94 2738 138 0.2534 0.2913 REMARK 3 22 1.6724 - 1.6467 0.94 2698 135 0.2553 0.2519 REMARK 3 23 1.6467 - 1.6225 0.93 2728 127 0.2636 0.2918 REMARK 3 24 1.6225 - 1.5996 0.86 2515 109 0.2859 0.2764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4096 REMARK 3 ANGLE : 1.076 5517 REMARK 3 CHIRALITY : 0.046 660 REMARK 3 PLANARITY : 0.004 689 REMARK 3 DIHEDRAL : 18.753 1581 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7879 11.4167 -8.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.0989 REMARK 3 T33: 0.1062 T12: -0.0031 REMARK 3 T13: -0.0096 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.7807 L22: 1.3187 REMARK 3 L33: 0.8439 L12: 0.4989 REMARK 3 L13: 0.1552 L23: 0.1732 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0028 S13: 0.1053 REMARK 3 S21: -0.0022 S22: 0.0297 S23: -0.0551 REMARK 3 S31: -0.1205 S32: 0.0944 S33: -0.0393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3920 11.3602 -24.9604 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.1774 REMARK 3 T33: 0.1525 T12: 0.0022 REMARK 3 T13: -0.0424 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.3883 L22: 2.2629 REMARK 3 L33: 3.7838 L12: -1.5261 REMARK 3 L13: 2.4872 L23: -2.0400 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.1369 S13: 0.1043 REMARK 3 S21: -0.2308 S22: 0.0024 S23: 0.0880 REMARK 3 S31: -0.1781 S32: -0.0326 S33: -0.0026 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5051 36.4332 -35.7013 REMARK 3 T TENSOR REMARK 3 T11: 0.6397 T22: 0.5476 REMARK 3 T33: 0.2039 T12: 0.0002 REMARK 3 T13: -0.0841 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.3562 L22: 1.1197 REMARK 3 L33: 1.4689 L12: -0.3510 REMARK 3 L13: -0.2268 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.1776 S12: -0.7945 S13: 0.1728 REMARK 3 S21: 0.7987 S22: 0.0988 S23: -0.2349 REMARK 3 S31: -0.0672 S32: 0.0766 S33: -0.0633 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3675 16.8269 -8.9102 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.1731 REMARK 3 T33: 0.1831 T12: -0.0620 REMARK 3 T13: -0.0603 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 5.0342 L22: 2.0000 REMARK 3 L33: 9.0535 L12: -4.0333 REMARK 3 L13: 2.5952 L23: -6.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: -0.0390 S13: 0.0615 REMARK 3 S21: -0.1526 S22: -0.0738 S23: 0.0801 REMARK 3 S31: 0.0396 S32: 0.1054 S33: 0.0380 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4907 -12.6619 -14.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1037 REMARK 3 T33: 0.1085 T12: -0.0019 REMARK 3 T13: -0.0037 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.3794 L22: 1.0819 REMARK 3 L33: 0.7923 L12: 0.5511 REMARK 3 L13: 0.0250 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.0664 S13: -0.1643 REMARK 3 S21: -0.0395 S22: 0.0147 S23: 0.0264 REMARK 3 S31: 0.0974 S32: -0.0189 S33: 0.0176 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3965 6.4356 -23.6861 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.1873 REMARK 3 T33: 0.1565 T12: 0.0138 REMARK 3 T13: -0.0152 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.4342 L22: 3.2477 REMARK 3 L33: 5.1183 L12: -1.9100 REMARK 3 L13: 2.5222 L23: -3.3405 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.2799 S13: 0.2568 REMARK 3 S21: -0.1198 S22: -0.0413 S23: 0.0283 REMARK 3 S31: -0.2025 S32: -0.0865 S33: 0.0389 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3963 14.7734 -50.6154 REMARK 3 T TENSOR REMARK 3 T11: 0.4491 T22: 0.6336 REMARK 3 T33: 0.7199 T12: 0.0299 REMARK 3 T13: -0.0380 T23: 0.2172 REMARK 3 L TENSOR REMARK 3 L11: 2.6173 L22: 2.0791 REMARK 3 L33: 1.1101 L12: -0.3780 REMARK 3 L13: 1.3780 L23: -1.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.7814 S13: -0.6420 REMARK 3 S21: -0.1085 S22: 0.0075 S23: -0.0734 REMARK 3 S31: 0.3777 S32: -0.4994 S33: -0.0236 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3360 -17.8871 -13.4543 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1905 REMARK 3 T33: 0.1843 T12: -0.0665 REMARK 3 T13: -0.0171 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 6.5765 L22: 8.3782 REMARK 3 L33: 7.8557 L12: 3.8167 REMARK 3 L13: -1.3783 L23: -4.6145 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -0.2330 S13: -0.3009 REMARK 3 S21: 0.0441 S22: -0.0450 S23: 0.1205 REMARK 3 S31: -0.1429 S32: 0.0202 S33: 0.0730 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B0L AND 2B18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, SODIUM CITRATE REMARK 280 DEHYDRATE, PEG400, PH 5.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.94700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.01150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.01400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.01150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.94700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.01400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLY B 236 REMARK 465 MET B 237 REMARK 465 SER B 256 REMARK 465 LYS B 257 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 MET A 237 REMARK 465 SER A 256 REMARK 465 LYS A 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 453 O HOH A 596 1.80 REMARK 500 O HOH B 479 O HOH B 576 1.83 REMARK 500 N MET B 1 O HOH B 401 1.89 REMARK 500 O HIS A 132 O HOH A 401 1.93 REMARK 500 O HOH A 408 O HOH A 416 1.93 REMARK 500 OD1 ASN B 138 O HOH B 402 2.00 REMARK 500 O HOH A 535 O HOH A 604 2.02 REMARK 500 OE2 GLU A 104 O HOH A 402 2.03 REMARK 500 O HOH B 405 O HOH B 581 2.05 REMARK 500 O HOH A 619 O HOH A 633 2.06 REMARK 500 O HOH B 478 O HOH B 498 2.08 REMARK 500 O HOH B 587 O HOH B 597 2.12 REMARK 500 O HOH A 402 O HOH A 591 2.13 REMARK 500 OD2 ASP B 26 O HOH B 403 2.13 REMARK 500 O HOH B 489 O HOH B 606 2.14 REMARK 500 O HOH B 513 O HOH B 556 2.16 REMARK 500 O HOH B 514 O HOH B 560 2.16 REMARK 500 OD2 ASP B 251 O HOH B 404 2.17 REMARK 500 O HOH B 432 O HOH B 591 2.18 REMARK 500 O HOH B 577 O HOH A 509 2.18 REMARK 500 O HOH B 567 O HOH A 613 2.18 REMARK 500 O HOH A 401 O HOH A 540 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 420 O HOH A 591 4545 2.05 REMARK 500 O HOH B 527 O HOH A 508 1655 2.12 REMARK 500 O HOH A 402 O HOH A 420 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 54 -86.80 -124.06 REMARK 500 HIS B 132 -64.16 -124.45 REMARK 500 SER B 234 64.98 -103.34 REMARK 500 ASN A 54 -91.18 -127.04 REMARK 500 ASN A 102 44.72 -108.64 REMARK 500 HIS A 132 -52.46 -129.47 REMARK 500 LYS A 248 11.59 -69.30 REMARK 500 GLU A 252 -44.24 93.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 634 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 635 DISTANCE = 6.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ILE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ILE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EY1 RELATED DB: PDB REMARK 900 RELATED ID: 5EY2 RELATED DB: PDB DBREF 5EY0 B 1 257 UNP A7X1N2 CODY_STAA1 1 257 DBREF 5EY0 A 1 257 UNP A7X1N2 CODY_STAA1 1 257 SEQADV 5EY0 HIS B -16 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS B -15 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS B -14 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS B -13 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS B -12 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS B -11 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 SER B -10 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 SER B -9 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 GLY B -8 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 LEU B -7 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 VAL B -6 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 PRO B -5 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 ARG B -4 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 GLY B -3 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 SER B -2 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS B -1 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 MET B 0 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -16 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -15 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -14 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -13 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -12 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -11 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 SER A -10 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 SER A -9 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 GLY A -8 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 LEU A -7 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 VAL A -6 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 PRO A -5 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 ARG A -4 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 GLY A -3 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 SER A -2 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 HIS A -1 UNP A7X1N2 EXPRESSION TAG SEQADV 5EY0 MET A 0 UNP A7X1N2 EXPRESSION TAG SEQRES 1 B 274 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 274 GLY SER HIS MET MET SER LEU LEU SER LYS THR ARG GLU SEQRES 3 B 274 LEU ASN THR LEU LEU GLN LYS HIS LYS GLY ILE ALA VAL SEQRES 4 B 274 ASP PHE LYS ASP VAL ALA GLN THR ILE SER SER VAL THR SEQRES 5 B 274 VAL THR ASN VAL PHE ILE VAL SER ARG ARG GLY LYS ILE SEQRES 6 B 274 LEU GLY SER SER LEU ASN GLU LEU LEU LYS SER GLN ARG SEQRES 7 B 274 ILE ILE GLN MET LEU GLU GLU ARG HIS ILE PRO SER GLU SEQRES 8 B 274 TYR THR GLU ARG LEU MET GLU VAL LYS GLN THR GLU SER SEQRES 9 B 274 ASN ILE ASP ILE ASP ASN VAL LEU THR VAL PHE PRO PRO SEQRES 10 B 274 GLU ASN ARG GLU LEU PHE ILE ASP SER ARG THR THR ILE SEQRES 11 B 274 PHE PRO ILE LEU GLY GLY GLY GLU ARG LEU GLY THR LEU SEQRES 12 B 274 VAL LEU GLY ARG VAL HIS ASP ASP PHE ASN GLU ASN ASP SEQRES 13 B 274 LEU VAL LEU GLY GLU TYR ALA ALA THR VAL ILE GLY MET SEQRES 14 B 274 GLU ILE LEU ARG GLU LYS HIS SER GLU VAL GLU LYS GLU SEQRES 15 B 274 ALA ARG ASP LYS ALA ALA ILE THR MET ALA ILE ASN SER SEQRES 16 B 274 LEU SER TYR SER GLU LYS GLU ALA ILE GLU HIS ILE PHE SEQRES 17 B 274 GLU GLU LEU GLY GLY THR GLU GLY LEU LEU ILE ALA SER SEQRES 18 B 274 LYS VAL ALA ASP ARG VAL GLY ILE THR ARG SER VAL ILE SEQRES 19 B 274 VAL ASN ALA LEU ARG LYS LEU GLU SER ALA GLY VAL ILE SEQRES 20 B 274 GLU SER ARG SER LEU GLY MET LYS GLY THR PHE ILE LYS SEQRES 21 B 274 VAL LYS LYS GLU LYS PHE LEU ASP GLU LEU GLU LYS SER SEQRES 22 B 274 LYS SEQRES 1 A 274 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 274 GLY SER HIS MET MET SER LEU LEU SER LYS THR ARG GLU SEQRES 3 A 274 LEU ASN THR LEU LEU GLN LYS HIS LYS GLY ILE ALA VAL SEQRES 4 A 274 ASP PHE LYS ASP VAL ALA GLN THR ILE SER SER VAL THR SEQRES 5 A 274 VAL THR ASN VAL PHE ILE VAL SER ARG ARG GLY LYS ILE SEQRES 6 A 274 LEU GLY SER SER LEU ASN GLU LEU LEU LYS SER GLN ARG SEQRES 7 A 274 ILE ILE GLN MET LEU GLU GLU ARG HIS ILE PRO SER GLU SEQRES 8 A 274 TYR THR GLU ARG LEU MET GLU VAL LYS GLN THR GLU SER SEQRES 9 A 274 ASN ILE ASP ILE ASP ASN VAL LEU THR VAL PHE PRO PRO SEQRES 10 A 274 GLU ASN ARG GLU LEU PHE ILE ASP SER ARG THR THR ILE SEQRES 11 A 274 PHE PRO ILE LEU GLY GLY GLY GLU ARG LEU GLY THR LEU SEQRES 12 A 274 VAL LEU GLY ARG VAL HIS ASP ASP PHE ASN GLU ASN ASP SEQRES 13 A 274 LEU VAL LEU GLY GLU TYR ALA ALA THR VAL ILE GLY MET SEQRES 14 A 274 GLU ILE LEU ARG GLU LYS HIS SER GLU VAL GLU LYS GLU SEQRES 15 A 274 ALA ARG ASP LYS ALA ALA ILE THR MET ALA ILE ASN SER SEQRES 16 A 274 LEU SER TYR SER GLU LYS GLU ALA ILE GLU HIS ILE PHE SEQRES 17 A 274 GLU GLU LEU GLY GLY THR GLU GLY LEU LEU ILE ALA SER SEQRES 18 A 274 LYS VAL ALA ASP ARG VAL GLY ILE THR ARG SER VAL ILE SEQRES 19 A 274 VAL ASN ALA LEU ARG LYS LEU GLU SER ALA GLY VAL ILE SEQRES 20 A 274 GLU SER ARG SER LEU GLY MET LYS GLY THR PHE ILE LYS SEQRES 21 A 274 VAL LYS LYS GLU LYS PHE LEU ASP GLU LEU GLU LYS SER SEQRES 22 A 274 LYS HET ILE B 301 9 HET GTP B 302 32 HET ILE A 301 9 HET GTP A 302 32 HETNAM ILE ISOLEUCINE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 ILE 2(C6 H13 N O2) FORMUL 4 GTP 2(C10 H16 N5 O14 P3) FORMUL 7 HOH *446(H2 O) HELIX 1 AA1 SER B 2 HIS B 17 1 16 HELIX 2 AA2 ASP B 23 VAL B 36 1 14 HELIX 3 AA3 ASN B 54 LYS B 58 5 5 HELIX 4 AA4 SER B 59 ARG B 69 1 11 HELIX 5 AA5 PRO B 72 GLU B 81 1 10 HELIX 6 AA6 PRO B 99 ILE B 107 5 9 HELIX 7 AA7 ASN B 136 LEU B 179 1 44 HELIX 8 AA8 SER B 180 GLU B 193 1 14 HELIX 9 AA9 ILE B 202 GLY B 211 1 10 HELIX 10 AB1 THR B 213 GLY B 228 1 16 HELIX 11 AB2 LYS B 248 LYS B 255 1 8 HELIX 12 AB3 SER A 2 HIS A 17 1 16 HELIX 13 AB4 ASP A 23 VAL A 36 1 14 HELIX 14 AB5 ASN A 54 LYS A 58 5 5 HELIX 15 AB6 SER A 59 ARG A 69 1 11 HELIX 16 AB7 PRO A 72 GLU A 81 1 10 HELIX 17 AB8 PRO A 99 ARG A 103 5 5 HELIX 18 AB9 ASN A 136 ASN A 177 1 42 HELIX 19 AC1 SER A 180 LEU A 194 1 15 HELIX 20 AC2 ILE A 202 ASP A 208 1 7 HELIX 21 AC3 THR A 213 ALA A 227 1 15 HELIX 22 AC4 LYS A 246 LYS A 248 5 3 HELIX 23 AC5 PHE A 249 GLU A 254 1 6 SHEET 1 AA1 5 ILE B 48 SER B 52 0 SHEET 2 AA1 5 ASN B 38 SER B 43 -1 N ILE B 41 O LEU B 49 SHEET 3 AA1 5 GLU B 121 ARG B 130 -1 O GLY B 129 N ASN B 38 SHEET 4 AA1 5 ARG B 110 GLY B 118 -1 N ILE B 116 O LEU B 123 SHEET 5 AA1 5 GLU B 86 ILE B 89 -1 N ILE B 89 O THR B 111 SHEET 1 AA2 3 GLU B 198 LEU B 201 0 SHEET 2 AA2 3 THR B 240 VAL B 244 -1 O THR B 240 N LEU B 201 SHEET 3 AA2 3 ILE B 230 ARG B 233 -1 N GLU B 231 O LYS B 243 SHEET 1 AA3 5 ILE A 48 SER A 52 0 SHEET 2 AA3 5 ASN A 38 SER A 43 -1 N VAL A 39 O SER A 52 SHEET 3 AA3 5 GLU A 121 ARG A 130 -1 O VAL A 127 N PHE A 40 SHEET 4 AA3 5 ARG A 110 GLY A 118 -1 N ILE A 116 O LEU A 123 SHEET 5 AA3 5 GLU A 86 ILE A 89 -1 N ILE A 89 O THR A 111 SHEET 1 AA4 3 GLU A 198 LEU A 201 0 SHEET 2 AA4 3 THR A 240 VAL A 244 -1 O THR A 240 N LEU A 201 SHEET 3 AA4 3 ILE A 230 ARG A 233 -1 N ARG A 233 O PHE A 241 SITE 1 AC1 9 ARG B 61 TYR B 75 THR B 96 VAL B 97 SITE 2 AC1 9 PHE B 98 PRO B 100 HOH B 436 HOH B 444 SITE 3 AC1 9 HOH B 480 SITE 1 AC2 21 VAL B 22 PHE B 24 SER B 43 ARG B 44 SITE 2 AC2 21 ARG B 45 LYS B 47 LEU B 49 GLU B 153 SITE 3 AC2 21 ARG B 156 GLU B 157 LYS B 158 GLU B 161 SITE 4 AC2 21 HOH B 408 HOH B 411 HOH B 412 HOH B 421 SITE 5 AC2 21 HOH B 435 HOH B 461 HOH B 470 HOH B 500 SITE 6 AC2 21 HOH B 539 SITE 1 AC3 10 ARG A 61 MET A 65 TYR A 75 THR A 96 SITE 2 AC3 10 VAL A 97 PHE A 98 PRO A 100 HOH A 436 SITE 3 AC3 10 HOH A 442 HOH A 495 SITE 1 AC4 22 VAL A 22 PHE A 24 SER A 43 ARG A 44 SITE 2 AC4 22 ARG A 45 LYS A 47 LEU A 49 GLU A 153 SITE 3 AC4 22 GLU A 157 LYS A 158 HOH A 405 HOH A 409 SITE 4 AC4 22 HOH A 410 HOH A 423 HOH A 443 HOH A 463 SITE 5 AC4 22 HOH A 483 HOH A 487 HOH A 490 HOH A 508 SITE 6 AC4 22 HOH A 544 TYR B 181 CRYST1 45.894 76.028 158.023 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006328 0.00000