HEADER TRANSFERASE 25-NOV-15 5EYM TITLE MEK1 IN COMPLEX WITH BI 847325 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 35-393; COMPND 5 SYNONYM: MKK1,ERK ACTIVATOR KINASE 1,MAPK/ERK KINASE 1,MEK 1; COMPND 6 EC: 2.7.12.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K1, MEK1, PRKMK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BADER,U.REISER,S.K.ZAHN,M.TREU REVDAT 3 10-JAN-24 5EYM 1 REMARK LINK REVDAT 2 19-OCT-16 5EYM 1 JRNL REVDAT 1 17-AUG-16 5EYM 0 JRNL AUTH P.SINI,U.GURTLER,S.K.ZAHN,C.BAUMANN,D.RUDOLPH, JRNL AUTH 2 R.BAUMGARTINGER,E.STRAUSS,C.HASLINGER,U.TONTSCH-GRUNT, JRNL AUTH 3 I.C.WAIZENEGGER,F.SOLCA,G.BADER,A.ZOEPHEL,M.TREU,U.REISER, JRNL AUTH 4 P.GARIN-CHESA,G.BOEHMELT,N.KRAUT,J.QUANT,G.R.ADOLF JRNL TITL PHARMACOLOGICAL PROFILE OF BI 847325, AN ORALLY JRNL TITL 2 BIOAVAILABLE, ATP-COMPETITIVE INHIBITOR OF MEK AND AURORA JRNL TITL 3 KINASES. JRNL REF MOL.CANCER THER. V. 15 2388 2016 JRNL REFN ESSN 1538-8514 JRNL PMID 27496137 JRNL DOI 10.1158/1535-7163.MCT-16-0066 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 19120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1357 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1216 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.01000 REMARK 3 B22 (A**2) : 5.01000 REMARK 3 B33 (A**2) : -7.51000 REMARK 3 B12 (A**2) : 2.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.417 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.381 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4637 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3237 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6261 ; 0.901 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7839 ; 1.252 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 5.407 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;30.537 ;24.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 797 ;13.626 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 703 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5088 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 902 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2912 ; 0.972 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1178 ; 0.124 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4665 ; 1.773 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1725 ; 2.458 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1596 ; 3.863 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 5EYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 68.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3EQC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG 4000, 100 MM TRIS, 300 MM REMARK 280 NACL, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.47067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.94133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.70600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 186.17667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.23533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 35 REMARK 465 LYS A 36 REMARK 465 LEU A 37 REMARK 465 GLU A 38 REMARK 465 GLU A 39 REMARK 465 LEU A 40 REMARK 465 ASN A 78 REMARK 465 GLY A 79 REMARK 465 GLY A 80 REMARK 465 LYS A 183 REMARK 465 HIS A 184 REMARK 465 LYS A 185 REMARK 465 ALA A 220 REMARK 465 ASN A 221 REMARK 465 SER A 222 REMARK 465 PHE A 223 REMARK 465 VAL A 224 REMARK 465 GLY A 225 REMARK 465 GLN A 236 REMARK 465 GLY A 237 REMARK 465 THR A 238 REMARK 465 HIS A 239 REMARK 465 TYR A 240 REMARK 465 SER A 241 REMARK 465 GLY A 276 REMARK 465 CYS A 277 REMARK 465 GLN A 278 REMARK 465 VAL A 279 REMARK 465 GLU A 280 REMARK 465 GLY A 281 REMARK 465 ASP A 282 REMARK 465 ALA A 283 REMARK 465 ALA A 284 REMARK 465 GLU A 285 REMARK 465 THR A 286 REMARK 465 PRO A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 PRO A 290 REMARK 465 ARG A 291 REMARK 465 THR A 292 REMARK 465 PRO A 293 REMARK 465 GLY A 294 REMARK 465 ARG A 295 REMARK 465 PRO A 296 REMARK 465 LEU A 297 REMARK 465 ASN A 298 REMARK 465 LYS A 299 REMARK 465 PHE A 300 REMARK 465 GLY A 301 REMARK 465 MET A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 ARG A 305 REMARK 465 PRO A 306 REMARK 465 ASN A 382 REMARK 465 GLN A 383 REMARK 465 PRO A 384 REMARK 465 SER A 385 REMARK 465 THR A 386 REMARK 465 PRO A 387 REMARK 465 THR A 388 REMARK 465 HIS A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 391 REMARK 465 GLY A 392 REMARK 465 VAL A 393 REMARK 465 LYS B 35 REMARK 465 LYS B 36 REMARK 465 LEU B 37 REMARK 465 GLU B 38 REMARK 465 GLU B 39 REMARK 465 LEU B 40 REMARK 465 ASN B 78 REMARK 465 GLY B 79 REMARK 465 GLY B 80 REMARK 465 LYS B 183 REMARK 465 HIS B 184 REMARK 465 LYS B 185 REMARK 465 ALA B 220 REMARK 465 ASN B 221 REMARK 465 SER B 222 REMARK 465 PHE B 223 REMARK 465 VAL B 224 REMARK 465 GLY B 225 REMARK 465 GLN B 236 REMARK 465 GLY B 237 REMARK 465 THR B 238 REMARK 465 HIS B 239 REMARK 465 TYR B 240 REMARK 465 SER B 241 REMARK 465 GLY B 276 REMARK 465 CYS B 277 REMARK 465 GLN B 278 REMARK 465 VAL B 279 REMARK 465 GLU B 280 REMARK 465 GLY B 281 REMARK 465 ASP B 282 REMARK 465 ALA B 283 REMARK 465 ALA B 284 REMARK 465 GLU B 285 REMARK 465 THR B 286 REMARK 465 PRO B 287 REMARK 465 PRO B 288 REMARK 465 ARG B 289 REMARK 465 PRO B 290 REMARK 465 ARG B 291 REMARK 465 THR B 292 REMARK 465 PRO B 293 REMARK 465 GLY B 294 REMARK 465 ARG B 295 REMARK 465 PRO B 296 REMARK 465 LEU B 297 REMARK 465 ASN B 298 REMARK 465 LYS B 299 REMARK 465 PHE B 300 REMARK 465 GLY B 301 REMARK 465 MET B 302 REMARK 465 ASP B 303 REMARK 465 SER B 304 REMARK 465 ARG B 305 REMARK 465 PRO B 306 REMARK 465 ASN B 382 REMARK 465 GLN B 383 REMARK 465 PRO B 384 REMARK 465 SER B 385 REMARK 465 THR B 386 REMARK 465 PRO B 387 REMARK 465 THR B 388 REMARK 465 HIS B 389 REMARK 465 ALA B 390 REMARK 465 ALA B 391 REMARK 465 GLY B 392 REMARK 465 VAL B 393 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 48 CG CD CE NZ REMARK 480 LEU A 50 CG CD1 CD2 REMARK 480 GLU A 51 CG CD OE1 OE2 REMARK 480 GLN A 56 CG CD OE1 NE2 REMARK 480 GLN A 58 CG CD OE1 NE2 REMARK 480 LYS A 59 CG CD CE NZ REMARK 480 LYS A 64 CE NZ REMARK 480 LYS A 70 CD CE NZ REMARK 480 LYS A 104 CG CD CE NZ REMARK 480 ASP A 136 CG OD1 OD2 REMARK 480 ILE A 141 CD1 REMARK 480 GLU A 182 CG CD OE1 OE2 REMARK 480 ILE A 186 CG1 CG2 CD1 REMARK 480 MET A 187 CG SD CE REMARK 480 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 45 CD OE1 NE2 REMARK 480 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 48 CG CD CE NZ REMARK 480 LEU B 50 CG CD1 CD2 REMARK 480 GLU B 51 CG CD OE1 OE2 REMARK 480 GLN B 56 CG CD OE1 NE2 REMARK 480 GLN B 58 CG CD OE1 NE2 REMARK 480 LYS B 59 CG CD CE NZ REMARK 480 LYS B 64 CE NZ REMARK 480 LYS B 70 CD CE NZ REMARK 480 LYS B 104 CG CD CE NZ REMARK 480 ILE B 107 CG1 CG2 CD1 REMARK 480 ASP B 136 CG OD1 OD2 REMARK 480 GLU B 182 CG CD OE1 OE2 REMARK 480 ILE B 186 CG1 CG2 CD1 REMARK 480 MET B 187 CG SD CE REMARK 480 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 480 ASP B 267 CG OD1 OD2 REMARK 480 LYS B 269 CD CE NZ REMARK 480 GLU B 270 CG CD OE1 OE2 REMARK 480 GLU B 272 CG CD OE1 OE2 REMARK 480 LEU B 273 CG CD1 CD2 REMARK 480 LYS B 344 CG CD CE NZ REMARK 480 GLU B 348 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 163 OG SER B 331 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 135 -119.16 -145.93 REMARK 500 ASP A 190 105.25 76.19 REMARK 500 ASP A 208 74.87 60.26 REMARK 500 ASP A 208 74.87 60.84 REMARK 500 LEU A 342 30.22 -90.70 REMARK 500 SER B 135 -90.76 -153.95 REMARK 500 ARG B 181 -78.40 -62.74 REMARK 500 ASP B 190 97.37 80.43 REMARK 500 ASP B 208 82.03 62.10 REMARK 500 ASP B 208 82.03 62.05 REMARK 500 ARG B 234 42.52 -90.63 REMARK 500 ALA B 359 -56.76 -21.39 REMARK 500 ASP B 370 75.64 -59.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 5U5 A 401 REMARK 615 5U5 B 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD1 REMARK 620 2 ASP A 65 OD2 45.2 REMARK 620 3 HOH A 501 O 80.7 54.5 REMARK 620 4 HOH A 504 O 61.6 82.8 136.7 REMARK 620 5 ASP B 66 OD2 131.2 92.3 92.9 96.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD2 REMARK 620 2 ASP A 66 OD1 96.4 REMARK 620 3 HOH A 507 O 82.6 146.9 REMARK 620 4 ASP B 65 OD2 160.1 88.2 83.1 REMARK 620 5 ASP B 66 OD1 94.2 130.3 82.6 97.6 REMARK 620 6 HOH B 503 O 95.2 78.9 68.4 66.6 147.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD2 REMARK 620 2 ASP B 65 OD1 128.4 REMARK 620 3 ASP B 65 OD2 87.2 43.1 REMARK 620 4 HOH B 502 O 90.8 70.6 52.0 REMARK 620 5 HOH B 507 O 97.6 74.8 90.7 141.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5U5 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5U5 B 401 DBREF 5EYM A 35 393 UNP Q02750 MP2K1_HUMAN 35 393 DBREF 5EYM B 35 393 UNP Q02750 MP2K1_HUMAN 35 393 SEQADV 5EYM ASN A 298 UNP Q02750 SER 298 ENGINEERED MUTATION SEQADV 5EYM LYS A 299 UNP Q02750 SER 299 ENGINEERED MUTATION SEQADV 5EYM PHE A 300 UNP Q02750 TYR 300 ENGINEERED MUTATION SEQADV 5EYM ASN B 298 UNP Q02750 SER 298 ENGINEERED MUTATION SEQADV 5EYM LYS B 299 UNP Q02750 SER 299 ENGINEERED MUTATION SEQADV 5EYM PHE B 300 UNP Q02750 TYR 300 ENGINEERED MUTATION SEQRES 1 A 359 LYS LYS LEU GLU GLU LEU GLU LEU ASP GLU GLN GLN ARG SEQRES 2 A 359 LYS ARG LEU GLU ALA PHE LEU THR GLN LYS GLN LYS VAL SEQRES 3 A 359 GLY GLU LEU LYS ASP ASP ASP PHE GLU LYS ILE SER GLU SEQRES 4 A 359 LEU GLY ALA GLY ASN GLY GLY VAL VAL PHE LYS VAL SER SEQRES 5 A 359 HIS LYS PRO SER GLY LEU VAL MET ALA ARG LYS LEU ILE SEQRES 6 A 359 HIS LEU GLU ILE LYS PRO ALA ILE ARG ASN GLN ILE ILE SEQRES 7 A 359 ARG GLU LEU GLN VAL LEU HIS GLU CYS ASN SER PRO TYR SEQRES 8 A 359 ILE VAL GLY PHE TYR GLY ALA PHE TYR SER ASP GLY GLU SEQRES 9 A 359 ILE SER ILE CYS MET GLU HIS MET ASP GLY GLY SER LEU SEQRES 10 A 359 ASP GLN VAL LEU LYS LYS ALA GLY ARG ILE PRO GLU GLN SEQRES 11 A 359 ILE LEU GLY LYS VAL SER ILE ALA VAL ILE LYS GLY LEU SEQRES 12 A 359 THR TYR LEU ARG GLU LYS HIS LYS ILE MET HIS ARG ASP SEQRES 13 A 359 VAL LYS PRO SER ASN ILE LEU VAL ASN SER ARG GLY GLU SEQRES 14 A 359 ILE LYS LEU CYS ASP PHE GLY VAL SER GLY GLN LEU ILE SEQRES 15 A 359 ASP SER MET ALA ASN SER PHE VAL GLY THR ARG SER TYR SEQRES 16 A 359 MET SER PRO GLU ARG LEU GLN GLY THR HIS TYR SER VAL SEQRES 17 A 359 GLN SER ASP ILE TRP SER MET GLY LEU SER LEU VAL GLU SEQRES 18 A 359 MET ALA VAL GLY ARG TYR PRO ILE PRO PRO PRO ASP ALA SEQRES 19 A 359 LYS GLU LEU GLU LEU MET PHE GLY CYS GLN VAL GLU GLY SEQRES 20 A 359 ASP ALA ALA GLU THR PRO PRO ARG PRO ARG THR PRO GLY SEQRES 21 A 359 ARG PRO LEU ASN LYS PHE GLY MET ASP SER ARG PRO PRO SEQRES 22 A 359 MET ALA ILE PHE GLU LEU LEU ASP TYR ILE VAL ASN GLU SEQRES 23 A 359 PRO PRO PRO LYS LEU PRO SER GLY VAL PHE SER LEU GLU SEQRES 24 A 359 PHE GLN ASP PHE VAL ASN LYS CYS LEU ILE LYS ASN PRO SEQRES 25 A 359 ALA GLU ARG ALA ASP LEU LYS GLN LEU MET VAL HIS ALA SEQRES 26 A 359 PHE ILE LYS ARG SER ASP ALA GLU GLU VAL ASP PHE ALA SEQRES 27 A 359 GLY TRP LEU CYS SER THR ILE GLY LEU ASN GLN PRO SER SEQRES 28 A 359 THR PRO THR HIS ALA ALA GLY VAL SEQRES 1 B 359 LYS LYS LEU GLU GLU LEU GLU LEU ASP GLU GLN GLN ARG SEQRES 2 B 359 LYS ARG LEU GLU ALA PHE LEU THR GLN LYS GLN LYS VAL SEQRES 3 B 359 GLY GLU LEU LYS ASP ASP ASP PHE GLU LYS ILE SER GLU SEQRES 4 B 359 LEU GLY ALA GLY ASN GLY GLY VAL VAL PHE LYS VAL SER SEQRES 5 B 359 HIS LYS PRO SER GLY LEU VAL MET ALA ARG LYS LEU ILE SEQRES 6 B 359 HIS LEU GLU ILE LYS PRO ALA ILE ARG ASN GLN ILE ILE SEQRES 7 B 359 ARG GLU LEU GLN VAL LEU HIS GLU CYS ASN SER PRO TYR SEQRES 8 B 359 ILE VAL GLY PHE TYR GLY ALA PHE TYR SER ASP GLY GLU SEQRES 9 B 359 ILE SER ILE CYS MET GLU HIS MET ASP GLY GLY SER LEU SEQRES 10 B 359 ASP GLN VAL LEU LYS LYS ALA GLY ARG ILE PRO GLU GLN SEQRES 11 B 359 ILE LEU GLY LYS VAL SER ILE ALA VAL ILE LYS GLY LEU SEQRES 12 B 359 THR TYR LEU ARG GLU LYS HIS LYS ILE MET HIS ARG ASP SEQRES 13 B 359 VAL LYS PRO SER ASN ILE LEU VAL ASN SER ARG GLY GLU SEQRES 14 B 359 ILE LYS LEU CYS ASP PHE GLY VAL SER GLY GLN LEU ILE SEQRES 15 B 359 ASP SER MET ALA ASN SER PHE VAL GLY THR ARG SER TYR SEQRES 16 B 359 MET SER PRO GLU ARG LEU GLN GLY THR HIS TYR SER VAL SEQRES 17 B 359 GLN SER ASP ILE TRP SER MET GLY LEU SER LEU VAL GLU SEQRES 18 B 359 MET ALA VAL GLY ARG TYR PRO ILE PRO PRO PRO ASP ALA SEQRES 19 B 359 LYS GLU LEU GLU LEU MET PHE GLY CYS GLN VAL GLU GLY SEQRES 20 B 359 ASP ALA ALA GLU THR PRO PRO ARG PRO ARG THR PRO GLY SEQRES 21 B 359 ARG PRO LEU ASN LYS PHE GLY MET ASP SER ARG PRO PRO SEQRES 22 B 359 MET ALA ILE PHE GLU LEU LEU ASP TYR ILE VAL ASN GLU SEQRES 23 B 359 PRO PRO PRO LYS LEU PRO SER GLY VAL PHE SER LEU GLU SEQRES 24 B 359 PHE GLN ASP PHE VAL ASN LYS CYS LEU ILE LYS ASN PRO SEQRES 25 B 359 ALA GLU ARG ALA ASP LEU LYS GLN LEU MET VAL HIS ALA SEQRES 26 B 359 PHE ILE LYS ARG SER ASP ALA GLU GLU VAL ASP PHE ALA SEQRES 27 B 359 GLY TRP LEU CYS SER THR ILE GLY LEU ASN GLN PRO SER SEQRES 28 B 359 THR PRO THR HIS ALA ALA GLY VAL HET 5U5 A 401 35 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET 5U5 B 401 35 HETNAM 5U5 3-[(3~{Z})-3-[[[4-[(DIMETHYLAMINO)METHYL]PHENYL]AMINO]- HETNAM 2 5U5 PHENYL-METHYLIDENE]-2-OXIDANYLIDENE-1~{H}-INDOL-6-YL]- HETNAM 3 5U5 ~{N}-ETHYL-PROP-2-YNAMIDE HETNAM CA CALCIUM ION FORMUL 3 5U5 2(C29 H28 N4 O2) FORMUL 4 CA 3(CA 2+) FORMUL 8 HOH *17(H2 O) HELIX 1 AA1 GLN A 45 LYS A 59 1 15 HELIX 2 AA2 LYS A 64 ASP A 66 5 3 HELIX 3 AA3 LYS A 104 GLN A 116 1 13 HELIX 4 AA4 GLN A 116 CYS A 121 1 6 HELIX 5 AA5 LEU A 151 GLY A 159 1 9 HELIX 6 AA6 PRO A 162 GLU A 182 1 21 HELIX 7 AA7 SER A 212 MET A 219 1 8 HELIX 8 AA8 SER A 231 LEU A 235 5 5 HELIX 9 AA9 GLN A 243 GLY A 259 1 17 HELIX 10 AB1 ASP A 267 PHE A 275 1 9 HELIX 11 AB2 ALA A 309 GLU A 320 1 12 HELIX 12 AB3 SER A 331 LEU A 342 1 12 HELIX 13 AB4 ASP A 351 VAL A 357 1 7 HELIX 14 AB5 HIS A 358 GLU A 367 1 10 HELIX 15 AB6 ASP A 370 GLY A 380 1 11 HELIX 16 AB7 ASP B 43 VAL B 60 1 18 HELIX 17 AB8 LYS B 64 ASP B 66 5 3 HELIX 18 AB9 LYS B 104 GLN B 116 1 13 HELIX 19 AC1 VAL B 117 GLU B 120 5 4 HELIX 20 AC2 SER B 150 GLY B 159 1 10 HELIX 21 AC3 PRO B 162 GLU B 182 1 21 HELIX 22 AC4 SER B 212 SER B 218 1 7 HELIX 23 AC5 SER B 231 LEU B 235 5 5 HELIX 24 AC6 GLN B 243 GLY B 259 1 17 HELIX 25 AC7 ASP B 267 PHE B 275 1 9 HELIX 26 AC8 ALA B 309 GLU B 320 1 12 HELIX 27 AC9 SER B 331 LEU B 342 1 12 HELIX 28 AD1 ASP B 351 VAL B 357 1 7 HELIX 29 AD2 HIS B 358 GLU B 367 1 10 HELIX 30 AD3 ASP B 370 GLY B 380 1 11 SHEET 1 AA1 5 PHE A 68 GLY A 75 0 SHEET 2 AA1 5 VAL A 82 HIS A 87 -1 O VAL A 82 N GLY A 75 SHEET 3 AA1 5 LEU A 92 HIS A 100 -1 O LEU A 92 N HIS A 87 SHEET 4 AA1 5 GLU A 138 GLU A 144 -1 O ILE A 139 N ILE A 99 SHEET 5 AA1 5 PHE A 129 TYR A 134 -1 N PHE A 133 O SER A 140 SHEET 1 AA2 3 GLY A 149 SER A 150 0 SHEET 2 AA2 3 ILE A 196 VAL A 198 -1 O VAL A 198 N GLY A 149 SHEET 3 AA2 3 ILE A 204 LEU A 206 -1 O LYS A 205 N LEU A 197 SHEET 1 AA3 5 PHE B 68 GLY B 75 0 SHEET 2 AA3 5 VAL B 82 HIS B 87 -1 O LYS B 84 N SER B 72 SHEET 3 AA3 5 LEU B 92 HIS B 100 -1 O ARG B 96 N PHE B 83 SHEET 4 AA3 5 GLU B 138 GLU B 144 -1 O MET B 143 N ALA B 95 SHEET 5 AA3 5 PHE B 129 TYR B 134 -1 N TYR B 130 O CYS B 142 SHEET 1 AA4 2 ILE B 196 VAL B 198 0 SHEET 2 AA4 2 ILE B 204 LEU B 206 -1 O LYS B 205 N LEU B 197 LINK OD1 ASP A 65 CA CA A 402 1555 1555 2.53 LINK OD2 ASP A 65 CA CA A 402 1555 1555 3.02 LINK OD2 ASP A 65 CA CA A 403 1555 1555 2.15 LINK OD1 ASP A 66 CA CA A 403 1555 1555 2.25 LINK OD2 ASP A 66 CA CA A 404 1555 1555 2.18 LINK CA CA A 402 O HOH A 501 1555 1555 2.74 LINK CA CA A 402 O HOH A 504 1555 1555 3.19 LINK CA CA A 402 OD2 ASP B 66 1555 1555 2.28 LINK CA CA A 403 O HOH A 507 1555 1555 2.47 LINK CA CA A 403 OD2 ASP B 65 1555 1555 2.46 LINK CA CA A 403 OD1 ASP B 66 1555 1555 2.34 LINK CA CA A 403 O HOH B 503 1555 1555 2.80 LINK CA CA A 404 OD1 ASP B 65 1555 1555 2.74 LINK CA CA A 404 OD2 ASP B 65 1555 1555 3.14 LINK CA CA A 404 O HOH B 502 1555 1555 3.08 LINK CA CA A 404 O HOH B 507 1555 1555 2.78 CISPEP 1 ILE A 263 PRO A 264 0 1.09 CISPEP 2 ILE B 263 PRO B 264 0 0.74 SITE 1 AC1 11 LEU A 74 ALA A 95 LYS A 97 MET A 143 SITE 2 AC1 11 GLU A 144 HIS A 145 MET A 146 GLY A 149 SITE 3 AC1 11 GLN A 153 LEU A 197 CYS A 207 SITE 1 AC2 3 ASP A 65 HOH A 501 ASP B 66 SITE 1 AC3 6 ASP A 65 ASP A 66 HOH A 507 ASP B 65 SITE 2 AC3 6 ASP B 66 HOH B 503 SITE 1 AC4 4 ASP A 66 ASP B 65 HOH B 502 HOH B 507 SITE 1 AC5 12 LEU B 74 GLY B 75 VAL B 82 ALA B 95 SITE 2 AC5 12 LYS B 97 MET B 143 GLU B 144 HIS B 145 SITE 3 AC5 12 MET B 146 GLN B 153 LEU B 197 CYS B 207 CRYST1 78.760 78.760 223.412 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012697 0.007331 0.000000 0.00000 SCALE2 0.000000 0.014661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004476 0.00000