HEADER ISOMERASE 25-NOV-15 5EYW TITLE CRYSTAL STRUCTURE OF LITOPENAEUS VANNAMEI TRIOSEPHOSPHATE ISOMERASE TITLE 2 COMPLEXED WITH 2-PHOSPHOGLYCOLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 3 ORGANISM_COMMON: WHITELEG SHRIMP; SOURCE 4 ORGANISM_TAXID: 6689; SOURCE 5 GENE: TIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJETEXPRESS404 KEYWDS TIM, SHRIMP, 2-PHOSPHOGLYCOLIC ACID, LOW-THERMAL STABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.CARRASCO-MIRANDA,A.A.LOPEZ-ZAVALA,L.G.BRIEBA,E.RUDINO-PINERA, AUTHOR 2 R.R.SOTELO-MUNDO REVDAT 6 27-SEP-23 5EYW 1 REMARK REVDAT 5 15-JAN-20 5EYW 1 REMARK REVDAT 4 08-JAN-20 5EYW 1 REMARK REVDAT 3 09-AUG-17 5EYW 1 JRNL REMARK REVDAT 2 05-OCT-16 5EYW 1 JRNL REVDAT 1 28-SEP-16 5EYW 0 JRNL AUTH A.A.LOPEZ-ZAVALA,J.S.CARRASCO-MIRANDA,C.D.RAMIREZ-AGUIRRE, JRNL AUTH 2 M.LOPEZ-HIDALGO,C.G.BENITEZ-CARDOZA,A.OCHOA-LEYVA, JRNL AUTH 3 C.S.CARDONA-FELIX,C.DIAZ-QUEZADA,E.RUDINO-PINERA, JRNL AUTH 4 R.R.SOTELO-MUNDO,L.G.BRIEBA JRNL TITL STRUCTURAL INSIGHTS FROM A NOVEL INVERTEBRATE JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE FROM LITOPENAEUS VANNAMEI. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1864 1696 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27614148 JRNL DOI 10.1016/J.BBAPAP.2016.09.002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 48043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1532 - 4.3657 0.98 2718 155 0.1984 0.2168 REMARK 3 2 4.3657 - 3.4674 0.98 2706 140 0.1637 0.1915 REMARK 3 3 3.4674 - 3.0298 0.98 2740 136 0.1829 0.2101 REMARK 3 4 3.0298 - 2.7531 0.98 2750 134 0.1865 0.2315 REMARK 3 5 2.7531 - 2.5559 0.98 2693 148 0.1888 0.2468 REMARK 3 6 2.5559 - 2.4053 0.98 2701 154 0.1917 0.2247 REMARK 3 7 2.4053 - 2.2849 0.97 2729 140 0.1892 0.2579 REMARK 3 8 2.2849 - 2.1855 0.96 2649 156 0.1970 0.2471 REMARK 3 9 2.1855 - 2.1014 0.97 2686 158 0.1892 0.2301 REMARK 3 10 2.1014 - 2.0289 0.96 2691 117 0.1944 0.2414 REMARK 3 11 2.0289 - 1.9655 0.97 2719 130 0.1799 0.2316 REMARK 3 12 1.9655 - 1.9093 0.96 2617 138 0.1999 0.2399 REMARK 3 13 1.9093 - 1.8591 0.96 2671 158 0.2116 0.2476 REMARK 3 14 1.8591 - 1.8137 0.96 2677 135 0.2000 0.2954 REMARK 3 15 1.8137 - 1.7725 0.96 2630 145 0.2157 0.2703 REMARK 3 16 1.7725 - 1.7348 0.96 2668 139 0.2173 0.2879 REMARK 3 17 1.7348 - 1.7001 0.92 2580 135 0.2455 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 42.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61480 REMARK 3 B22 (A**2) : 2.07410 REMARK 3 B33 (A**2) : -1.45920 REMARK 3 B12 (A**2) : -0.92370 REMARK 3 B13 (A**2) : -0.88750 REMARK 3 B23 (A**2) : -0.18000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3816 REMARK 3 ANGLE : 1.089 5164 REMARK 3 CHIRALITY : 0.070 560 REMARK 3 PLANARITY : 0.005 680 REMARK 3 DIHEDRAL : 15.082 1406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : 1M LONG RH COATED TOROIDAL REMARK 200 MIRROR FOR VERTICAL AND REMARK 200 HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 15.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2I9E REMARK 200 REMARK 200 REMARK: NEEDLE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION EXPERIMENTS WAS REMARK 280 PERFORMED WITH THE ADDITION OF 15 MM PGA TO THE CONCENTRATED REMARK 280 LVTIM PROTEIN. NEEDLE-LIKE CRYSTALS APPEARED IN A RESERVOIR REMARK 280 SOLUTION CONTAINING 100MM TRIS HCL PH 8.5, 30% W/V POLYETHYLENE REMARK 280 GLYCOL 4,000 AND 200MM LITHIUM SULFATE MONOHYDRATE. PROTEIN REMARK 280 CRYSTALS GREW FOR ONE WEEK REACHING DIMENSIONS OF 400 X 50 X 50 REMARK 280 UM., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 249 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 682 O HOH B 554 1.84 REMARK 500 O HOH A 489 O HOH B 423 1.87 REMARK 500 O HOH B 445 O HOH B 749 1.87 REMARK 500 O HOH B 425 O HOH B 646 1.89 REMARK 500 N ARG A 5 O HOH A 401 1.90 REMARK 500 O LEU B 34 O HOH B 401 1.90 REMARK 500 O HOH A 623 O HOH A 792 1.90 REMARK 500 O HOH B 404 O HOH B 654 1.90 REMARK 500 O HOH B 784 O HOH B 788 1.91 REMARK 500 O HOH B 414 O HOH B 523 1.92 REMARK 500 NH2 ARG A 248 O HOH A 402 1.92 REMARK 500 O HOH B 706 O HOH B 824 1.93 REMARK 500 O THR A 176 O HOH A 403 1.94 REMARK 500 O HOH A 413 O HOH A 726 1.94 REMARK 500 N LEU A 49 O HOH A 404 1.94 REMARK 500 O HOH A 421 O HOH A 426 1.96 REMARK 500 O HOH B 408 O HOH B 746 1.96 REMARK 500 O HOH A 475 O HOH A 544 1.97 REMARK 500 NE1 TRP A 158 O HOH A 405 1.98 REMARK 500 O HOH A 491 O HOH A 649 1.99 REMARK 500 O HOH A 472 O HOH A 737 1.99 REMARK 500 O HOH A 604 O HOH A 728 1.99 REMARK 500 O HOH B 736 O HOH B 766 2.01 REMARK 500 O HOH B 511 O HOH B 547 2.01 REMARK 500 O HOH B 420 O HOH B 656 2.02 REMARK 500 O HOH A 637 O HOH B 689 2.03 REMARK 500 O HOH A 440 O HOH A 703 2.03 REMARK 500 O HOH A 714 O HOH B 689 2.03 REMARK 500 O HOH B 471 O HOH B 661 2.03 REMARK 500 O HOH A 692 O HOH B 701 2.03 REMARK 500 O HOH A 427 O HOH A 489 2.03 REMARK 500 NH2 ARG B 190 O THR B 205 2.04 REMARK 500 O HOH B 402 O HOH B 411 2.04 REMARK 500 O HOH A 618 O HOH A 789 2.05 REMARK 500 O HOH A 414 O HOH A 675 2.05 REMARK 500 NH2 ARG B 248 O HOH B 402 2.05 REMARK 500 O HOH B 402 O HOH B 424 2.06 REMARK 500 ND2 ASN A 59 O HOH A 406 2.06 REMARK 500 O HOH B 656 O HOH B 783 2.08 REMARK 500 O HOH B 853 O HOH B 858 2.08 REMARK 500 O HOH B 719 O HOH B 794 2.08 REMARK 500 O HOH B 413 O HOH B 635 2.08 REMARK 500 O HOH A 737 O HOH A 808 2.08 REMARK 500 O HOH B 670 O HOH B 713 2.09 REMARK 500 O VAL A 41 O HOH A 407 2.09 REMARK 500 O HOH B 418 O HOH B 664 2.09 REMARK 500 O HOH A 832 O HOH B 665 2.09 REMARK 500 O HOH B 663 O HOH B 798 2.09 REMARK 500 O HOH B 823 O HOH B 852 2.09 REMARK 500 O HOH B 636 O HOH B 766 2.10 REMARK 500 REMARK 500 THIS ENTRY HAS 89 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 753 O HOH B 738 1554 1.71 REMARK 500 O HOH A 669 O HOH B 744 1564 1.78 REMARK 500 O HOH A 695 O HOH A 830 1565 1.81 REMARK 500 O HOH A 657 O HOH B 754 1564 1.85 REMARK 500 O HOH A 607 O HOH A 757 1565 1.89 REMARK 500 O HOH A 417 O HOH B 670 1564 2.02 REMARK 500 O HOH A 679 O HOH B 585 1564 2.07 REMARK 500 O HOH B 822 O HOH B 843 1545 2.07 REMARK 500 O HOH A 650 O HOH B 562 1554 2.15 REMARK 500 O HOH A 835 O HOH B 771 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 139 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 139 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -140.71 35.81 REMARK 500 ASP A 157 93.67 -162.41 REMARK 500 VAL A 197 -91.07 -122.30 REMARK 500 ASN A 246 33.49 -96.80 REMARK 500 LYS B 14 -144.05 44.15 REMARK 500 VAL B 197 -99.39 -122.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 843 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 844 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 845 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 846 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 847 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 848 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 849 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 850 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 851 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 852 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A 853 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A 854 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 855 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A 856 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH A 858 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH A 859 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH A 860 DISTANCE = 8.68 ANGSTROMS REMARK 525 HOH A 861 DISTANCE = 11.19 ANGSTROMS REMARK 525 HOH B 832 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 833 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 834 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 835 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 836 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 837 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 838 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 839 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 840 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 841 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 842 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 843 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 844 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 845 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 846 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 847 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 848 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 849 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 850 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 851 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 852 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 853 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH B 854 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH B 855 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH B 856 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH B 857 DISTANCE = 8.74 ANGSTROMS REMARK 525 HOH B 858 DISTANCE = 9.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA B 301 DBREF 5EYW A 1 249 UNP K0E682 K0E682_LITVA 1 249 DBREF 5EYW B 1 249 UNP K0E682 K0E682_LITVA 1 249 SEQRES 1 A 249 MET ALA SER PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP SEQRES 2 A 249 LYS MET ASN GLY ASP LYS ALA ALA ILE ASP GLY ILE ILE SEQRES 3 A 249 SER PHE MET LYS THR GLY PRO LEU SER PRO ASN THR GLU SEQRES 4 A 249 VAL VAL VAL GLY CYS PRO GLN CYS TYR LEU MET TYR THR SEQRES 5 A 249 ARG GLU HIS MET PRO ALA ASN ILE GLY ILE ALA ALA GLN SEQRES 6 A 249 ASN CYS TYR LYS VAL ALA LYS GLY ALA PHE THR GLY GLU SEQRES 7 A 249 ILE SER PRO ALA MET VAL LYS ASP CYS GLY CYS GLU TRP SEQRES 8 A 249 VAL ILE LEU GLY HIS SER GLU ARG ARG ASN VAL PHE GLY SEQRES 9 A 249 GLU PRO ASP GLN LEU ILE SER GLU LYS VAL GLY HIS ALA SEQRES 10 A 249 LEU GLU ALA GLY LEU LYS VAL ILE PRO CYS ILE GLY GLU SEQRES 11 A 249 LYS LEU GLU ASP ARG GLU GLY ASN ARG THR GLN GLU VAL SEQRES 12 A 249 VAL PHE ALA GLN MET LYS ALA LEU LEU PRO ASN ILE SER SEQRES 13 A 249 ASP TRP SER ARG VAL VAL LEU ALA TYR GLU PRO VAL TRP SEQRES 14 A 249 ALA ILE GLY THR GLY LYS THR ALA SER PRO GLU GLN ALA SEQRES 15 A 249 GLN GLU VAL HIS ALA ASP LEU ARG GLN TRP LEU ARG ASP SEQRES 16 A 249 ASN VAL ASN ALA GLU VAL ALA GLU SER THR ARG ILE ILE SEQRES 17 A 249 TYR GLY GLY SER VAL SER ALA GLY ASN CYS GLN GLU LEU SEQRES 18 A 249 ALA LYS LYS GLY ASP ILE ASP GLY PHE LEU VAL GLY GLY SEQRES 19 A 249 ALA ALA LEU LYS PRO ASP PHE VAL GLN ILE ILE ASN ALA SEQRES 20 A 249 ARG GLY SEQRES 1 B 249 MET ALA SER PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP SEQRES 2 B 249 LYS MET ASN GLY ASP LYS ALA ALA ILE ASP GLY ILE ILE SEQRES 3 B 249 SER PHE MET LYS THR GLY PRO LEU SER PRO ASN THR GLU SEQRES 4 B 249 VAL VAL VAL GLY CYS PRO GLN CYS TYR LEU MET TYR THR SEQRES 5 B 249 ARG GLU HIS MET PRO ALA ASN ILE GLY ILE ALA ALA GLN SEQRES 6 B 249 ASN CYS TYR LYS VAL ALA LYS GLY ALA PHE THR GLY GLU SEQRES 7 B 249 ILE SER PRO ALA MET VAL LYS ASP CYS GLY CYS GLU TRP SEQRES 8 B 249 VAL ILE LEU GLY HIS SER GLU ARG ARG ASN VAL PHE GLY SEQRES 9 B 249 GLU PRO ASP GLN LEU ILE SER GLU LYS VAL GLY HIS ALA SEQRES 10 B 249 LEU GLU ALA GLY LEU LYS VAL ILE PRO CYS ILE GLY GLU SEQRES 11 B 249 LYS LEU GLU ASP ARG GLU GLY ASN ARG THR GLN GLU VAL SEQRES 12 B 249 VAL PHE ALA GLN MET LYS ALA LEU LEU PRO ASN ILE SER SEQRES 13 B 249 ASP TRP SER ARG VAL VAL LEU ALA TYR GLU PRO VAL TRP SEQRES 14 B 249 ALA ILE GLY THR GLY LYS THR ALA SER PRO GLU GLN ALA SEQRES 15 B 249 GLN GLU VAL HIS ALA ASP LEU ARG GLN TRP LEU ARG ASP SEQRES 16 B 249 ASN VAL ASN ALA GLU VAL ALA GLU SER THR ARG ILE ILE SEQRES 17 B 249 TYR GLY GLY SER VAL SER ALA GLY ASN CYS GLN GLU LEU SEQRES 18 B 249 ALA LYS LYS GLY ASP ILE ASP GLY PHE LEU VAL GLY GLY SEQRES 19 B 249 ALA ALA LEU LYS PRO ASP PHE VAL GLN ILE ILE ASN ALA SEQRES 20 B 249 ARG GLY HET PGA A 301 9 HET PGA B 301 9 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID FORMUL 3 PGA 2(C2 H5 O6 P) FORMUL 5 HOH *919(H2 O) HELIX 1 AA1 ASP A 18 GLY A 32 1 15 HELIX 2 AA2 PRO A 45 CYS A 47 5 3 HELIX 3 AA3 TYR A 48 MET A 56 1 9 HELIX 4 AA4 SER A 80 CYS A 87 1 8 HELIX 5 AA5 HIS A 96 VAL A 102 1 7 HELIX 6 AA6 PRO A 106 GLY A 121 1 16 HELIX 7 AA7 LYS A 131 GLY A 137 1 7 HELIX 8 AA8 ARG A 139 LEU A 152 1 14 HELIX 9 AA9 PRO A 153 ILE A 155 5 3 HELIX 10 AB1 ASP A 157 ARG A 160 5 4 HELIX 11 AB2 PRO A 167 ILE A 171 5 5 HELIX 12 AB3 SER A 178 VAL A 197 1 20 HELIX 13 AB4 ASN A 198 THR A 205 1 8 HELIX 14 AB5 ASN A 217 LYS A 223 1 7 HELIX 15 AB6 GLY A 233 PRO A 239 5 7 HELIX 16 AB7 ASP A 240 ASN A 246 1 7 HELIX 17 AB8 ASP B 18 GLY B 32 1 15 HELIX 18 AB9 PRO B 45 CYS B 47 5 3 HELIX 19 AC1 TYR B 48 MET B 56 1 9 HELIX 20 AC2 SER B 80 CYS B 87 1 8 HELIX 21 AC3 HIS B 96 VAL B 102 1 7 HELIX 22 AC4 PRO B 106 ALA B 120 1 15 HELIX 23 AC5 LYS B 131 GLY B 137 1 7 HELIX 24 AC6 ARG B 139 LEU B 152 1 14 HELIX 25 AC7 PRO B 153 ILE B 155 5 3 HELIX 26 AC8 ASP B 157 VAL B 161 5 5 HELIX 27 AC9 PRO B 167 ILE B 171 5 5 HELIX 28 AD1 SER B 178 VAL B 197 1 20 HELIX 29 AD2 ASN B 198 THR B 205 1 8 HELIX 30 AD3 ASN B 217 LYS B 223 1 7 HELIX 31 AD4 GLY B 233 PRO B 239 5 7 HELIX 32 AD5 ASP B 240 ASN B 246 1 7 SHEET 1 AA1 9 PHE A 7 ASN A 12 0 SHEET 2 AA1 9 THR A 38 GLY A 43 1 O GLU A 39 N PHE A 7 SHEET 3 AA1 9 GLY A 61 ALA A 64 1 O ALA A 63 N VAL A 42 SHEET 4 AA1 9 TRP A 91 LEU A 94 1 O ILE A 93 N ALA A 64 SHEET 5 AA1 9 LYS A 123 ILE A 128 1 O CYS A 127 N LEU A 94 SHEET 6 AA1 9 VAL A 162 TYR A 165 1 O ALA A 164 N ILE A 128 SHEET 7 AA1 9 ARG A 206 GLY A 210 1 O ILE A 208 N TYR A 165 SHEET 8 AA1 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 AA1 9 PHE A 7 ASN A 12 1 N GLY A 10 O PHE A 230 SHEET 1 AA2 9 PHE B 7 ASN B 12 0 SHEET 2 AA2 9 THR B 38 GLY B 43 1 O GLY B 43 N GLY B 11 SHEET 3 AA2 9 GLY B 61 ALA B 64 1 O ALA B 63 N VAL B 42 SHEET 4 AA2 9 TRP B 91 LEU B 94 1 O ILE B 93 N ALA B 64 SHEET 5 AA2 9 LYS B 123 ILE B 128 1 O ILE B 125 N VAL B 92 SHEET 6 AA2 9 LEU B 163 TYR B 165 1 O ALA B 164 N ILE B 128 SHEET 7 AA2 9 ILE B 207 GLY B 210 1 O ILE B 208 N LEU B 163 SHEET 8 AA2 9 GLY B 229 VAL B 232 1 O GLY B 229 N TYR B 209 SHEET 9 AA2 9 PHE B 7 ASN B 12 1 N GLY B 10 O VAL B 232 CISPEP 1 GLY A 32 PRO A 33 0 3.38 CISPEP 2 GLY B 32 PRO B 33 0 8.16 SITE 1 AC1 16 ASN A 12 LYS A 14 HIS A 96 GLU A 166 SITE 2 AC1 16 ALA A 170 ILE A 171 GLY A 172 SER A 212 SITE 3 AC1 16 LEU A 231 GLY A 233 GLY A 234 HOH A 474 SITE 4 AC1 16 HOH A 475 HOH A 480 HOH A 498 HOH A 544 SITE 1 AC2 16 ASN B 12 LYS B 14 HIS B 96 GLU B 166 SITE 2 AC2 16 ALA B 170 ILE B 171 GLY B 172 GLY B 211 SITE 3 AC2 16 SER B 212 LEU B 231 GLY B 233 GLY B 234 SITE 4 AC2 16 HOH B 432 HOH B 481 HOH B 485 HOH B 533 CRYST1 38.140 45.980 71.850 74.56 80.24 75.17 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026219 -0.006942 -0.002969 0.00000 SCALE2 0.000000 0.022498 -0.005413 0.00000 SCALE3 0.000000 0.000000 0.014525 0.00000