HEADER APOPTOSIS 26-NOV-15 5EYZ TITLE CRYSTAL STRUCTURE OF THE PTPN4 PDZ DOMAIN COMPLEXED WITH THE TAILORED TITLE 2 PEPTIDE CYTO8-RETEV COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PDZ DOMAIN, RESIDUES 499-604; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE MEG1,PTPASE-MEG1; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYTO8-RETEV; COMPND 10 CHAIN: E, F, G, H; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST15; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS APOPTOSIS, CELL DEATH, GLIOBLASTOMA, MULTIPROTEIN COMPLEXES, PDZ KEYWDS 2 DOMAINS, PEPTIDES DESIGN, PROTEIN BINDING, NON-RECEPTOR TYPE 4, KEYWDS 3 PTPN4, RABIES VIRUS, PDZ BINDING MOTIF EXPDTA X-RAY DIFFRACTION AUTHOR P.MAISONNEUVE,M.C.VANEY,B.BABAULT,C.CAILLET-SAGUY,M.LAFON, AUTHOR 2 M.DELEPIERRE,F.CORDIER,N.WOLFF REVDAT 7 10-JAN-24 5EYZ 1 REMARK REVDAT 6 16-OCT-19 5EYZ 1 REMARK REVDAT 5 20-DEC-17 5EYZ 1 AUTHOR JRNL REVDAT 4 19-OCT-16 5EYZ 1 REMARK REVDAT 3 17-AUG-16 5EYZ 1 JRNL REVDAT 2 15-JUN-16 5EYZ 1 JRNL REVDAT 1 08-JUN-16 5EYZ 0 JRNL AUTH P.MAISONNEUVE,C.CAILLET-SAGUY,M.C.VANEY,E.BIBI-ZAINAB, JRNL AUTH 2 K.SAWYER,B.RAYNAL,A.HAOUZ,M.DELEPIERRE,M.LAFON,F.CORDIER, JRNL AUTH 3 N.WOLFF JRNL TITL MOLECULAR BASIS OF THE INTERACTION OF THE HUMAN PROTEIN JRNL TITL 2 TYROSINE PHOSPHATASE NON-RECEPTOR TYPE 4 (PTPN4) WITH THE JRNL TITL 3 MITOGEN-ACTIVATED PROTEIN KINASE P38 GAMMA. JRNL REF J.BIOL.CHEM. V. 291 16699 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27246854 JRNL DOI 10.1074/JBC.M115.707208 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.BABAULT,F.CORDIER,M.LAFAGE,J.COCKBURN,A.HAOUZ,C.PREHAUD, REMARK 1 AUTH 2 F.A.REY,M.DELEPIERRE,H.BUC,M.LAFON,N.WOLFF REMARK 1 TITL PEPTIDES TARGETING THE PDZ DOMAIN OF PTPN4 ARE EFFICIENT REMARK 1 TITL 2 INDUCERS OF GLIOBLASTOMA CELL DEATH. REMARK 1 REF STRUCTURE V. 19 1518 2011 REMARK 1 REFN ISSN 1878-4186 REMARK 1 PMID 22000519 REMARK 1 DOI 10.1016/J.STR.2011.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 30234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.02 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1670 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2402 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1590 REMARK 3 BIN R VALUE (WORKING SET) : 0.2377 REMARK 3 BIN FREE R VALUE : 0.2926 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.79 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3066 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.76970 REMARK 3 B22 (A**2) : 3.32400 REMARK 3 B33 (A**2) : -11.09370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.419 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.208 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.164 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.207 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.165 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3111 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4204 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1116 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 98 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 446 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3111 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 392 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3393 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 28.7617 -27.2673 -16.3857 REMARK 3 T TENSOR REMARK 3 T11: -0.1847 T22: -0.1559 REMARK 3 T33: -0.0792 T12: -0.0031 REMARK 3 T13: -0.0059 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 6.4852 L22: 5.9905 REMARK 3 L33: 4.1884 L12: 2.2317 REMARK 3 L13: -0.4465 L23: -0.5537 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.1333 S13: 0.0704 REMARK 3 S21: 0.0038 S22: -0.2199 S23: -0.4179 REMARK 3 S31: -0.1617 S32: 0.0922 S33: 0.1388 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 13.7677 -49.1950 -19.3946 REMARK 3 T TENSOR REMARK 3 T11: -0.1459 T22: -0.1077 REMARK 3 T33: -0.0434 T12: 0.0119 REMARK 3 T13: 0.0039 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 7.2650 L22: 5.3750 REMARK 3 L33: 5.5812 L12: -0.5985 REMARK 3 L13: 0.6463 L23: -0.9389 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.0290 S13: 0.0477 REMARK 3 S21: -0.2783 S22: 0.0359 S23: 0.5443 REMARK 3 S31: 0.0261 S32: -0.1881 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -13.4567 -28.8054 -25.8674 REMARK 3 T TENSOR REMARK 3 T11: -0.1586 T22: -0.2018 REMARK 3 T33: -0.0780 T12: -0.0221 REMARK 3 T13: 0.0460 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 8.1595 L22: 4.9833 REMARK 3 L33: 4.3574 L12: 1.6540 REMARK 3 L13: 0.2353 L23: -0.5846 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0128 S13: -0.5443 REMARK 3 S21: -0.2055 S22: 0.1011 S23: 0.0824 REMARK 3 S31: 0.4365 S32: -0.0950 S33: -0.0866 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 8.8189 -14.6376 -22.9217 REMARK 3 T TENSOR REMARK 3 T11: -0.1433 T22: -0.1640 REMARK 3 T33: -0.0069 T12: 0.0295 REMARK 3 T13: 0.0102 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 6.9960 L22: 5.7003 REMARK 3 L33: 6.7661 L12: 0.1178 REMARK 3 L13: -1.3236 L23: 1.2724 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: -0.0744 S13: 0.5444 REMARK 3 S21: -0.0169 S22: -0.0425 S23: 0.1060 REMARK 3 S31: -0.2166 S32: 0.0871 S33: -0.0511 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 34.9217 -33.8594 -9.2500 REMARK 3 T TENSOR REMARK 3 T11: -0.0205 T22: -0.0062 REMARK 3 T33: 0.0350 T12: -0.0126 REMARK 3 T13: -0.0489 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 0.3308 L22: 0.6544 REMARK 3 L33: 0.0000 L12: -0.2170 REMARK 3 L13: -0.0729 L23: -0.3614 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.0602 S13: -0.0028 REMARK 3 S21: 0.0469 S22: -0.0069 S23: -0.0130 REMARK 3 S31: -0.0105 S32: 0.0056 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 11.4101 -40.7599 -12.0495 REMARK 3 T TENSOR REMARK 3 T11: -0.0369 T22: -0.0131 REMARK 3 T33: 0.0597 T12: 0.0825 REMARK 3 T13: 0.0735 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 0.3775 L22: 0.3677 REMARK 3 L33: 0.0756 L12: -0.1053 REMARK 3 L13: -0.1721 L23: 0.4173 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0591 S13: -0.0017 REMARK 3 S21: 0.0362 S22: -0.0104 S23: 0.0213 REMARK 3 S31: 0.0009 S32: -0.0200 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): -7.2119 -35.3199 -33.1895 REMARK 3 T TENSOR REMARK 3 T11: -0.0030 T22: -0.0242 REMARK 3 T33: 0.0330 T12: 0.0659 REMARK 3 T13: 0.0491 T23: -0.1266 REMARK 3 L TENSOR REMARK 3 L11: 0.3820 L22: 0.1386 REMARK 3 L33: 0.0129 L12: -0.5769 REMARK 3 L13: -0.4768 L23: 0.2434 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0372 S13: -0.0208 REMARK 3 S21: -0.0313 S22: 0.0090 S23: 0.0086 REMARK 3 S31: 0.0113 S32: -0.0082 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 0.8818 -11.8718 -30.2823 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: -0.0386 REMARK 3 T33: 0.0800 T12: 0.1038 REMARK 3 T13: -0.0379 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 0.0997 L22: 0.3387 REMARK 3 L33: 0.0004 L12: -0.4384 REMARK 3 L13: 0.4725 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0476 S13: 0.0133 REMARK 3 S21: -0.0702 S22: 0.0043 S23: 0.0121 REMARK 3 S31: -0.0204 S32: 0.0025 S33: -0.0041 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 5EYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28268 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NFK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 8000, 0.1 M MES PH 6.0, 0.2 M REMARK 280 CALCIUM ACETATE, 0.143 MM AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.85500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.44000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.85500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.44000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.11500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.85500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.44000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.11500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.85500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.44000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 GLU A 502 REMARK 465 LYS A 503 REMARK 465 PRO A 504 REMARK 465 THR A 505 REMARK 465 PRO A 506 REMARK 465 ASN A 507 REMARK 465 GLY A 508 REMARK 465 GLY A 509 REMARK 465 ILE A 510 REMARK 465 PRO A 511 REMARK 465 GLY B 498 REMARK 465 SER B 499 REMARK 465 SER B 500 REMARK 465 PRO B 501 REMARK 465 GLU B 502 REMARK 465 LYS B 503 REMARK 465 PRO B 504 REMARK 465 THR B 505 REMARK 465 PRO B 506 REMARK 465 ASN B 507 REMARK 465 GLY B 508 REMARK 465 GLY B 509 REMARK 465 ILE B 510 REMARK 465 GLY C 498 REMARK 465 SER C 499 REMARK 465 SER C 500 REMARK 465 PRO C 501 REMARK 465 GLU C 502 REMARK 465 LYS C 503 REMARK 465 PRO C 504 REMARK 465 THR C 505 REMARK 465 PRO C 506 REMARK 465 ASN C 507 REMARK 465 GLY C 508 REMARK 465 GLY C 509 REMARK 465 ILE C 510 REMARK 465 PRO C 511 REMARK 465 GLY D 498 REMARK 465 SER D 499 REMARK 465 SER D 500 REMARK 465 PRO D 501 REMARK 465 GLU D 502 REMARK 465 LYS D 503 REMARK 465 PRO D 504 REMARK 465 THR D 505 REMARK 465 PRO D 506 REMARK 465 ASN D 507 REMARK 465 GLY D 508 REMARK 465 GLY D 509 REMARK 465 ILE D 510 REMARK 465 PRO D 511 REMARK 465 HIS D 512 REMARK 465 SER E 1 REMARK 465 TRP E 2 REMARK 465 GLU E 3 REMARK 465 SER E 4 REMARK 465 HIS E 5 REMARK 465 LYS E 6 REMARK 465 SER E 7 REMARK 465 SER F 1 REMARK 465 TRP F 2 REMARK 465 GLU F 3 REMARK 465 SER F 4 REMARK 465 HIS F 5 REMARK 465 LYS F 6 REMARK 465 SER F 7 REMARK 465 SER G 1 REMARK 465 TRP G 2 REMARK 465 GLU G 3 REMARK 465 SER G 4 REMARK 465 HIS G 5 REMARK 465 LYS G 6 REMARK 465 SER G 7 REMARK 465 SER H 1 REMARK 465 TRP H 2 REMARK 465 GLU H 3 REMARK 465 SER H 4 REMARK 465 HIS H 5 REMARK 465 LYS H 6 REMARK 465 SER H 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 512 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 593 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 593 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 512 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 593 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 513 -174.51 61.59 REMARK 500 ASP A 523 -166.90 -78.05 REMARK 500 HIS B 512 -75.27 -105.86 REMARK 500 ASN B 514 17.64 58.26 REMARK 500 ASP B 523 -167.41 -77.14 REMARK 500 SER B 594 56.08 -111.72 REMARK 500 ASP C 513 -79.02 59.38 REMARK 500 SER C 594 74.45 16.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NFK RELATED DB: PDB REMARK 900 3NFK CONTAINS THE SAME PDZ DOMAIN OF THE PROTEIN TYROSINE REMARK 900 PHOSPHATASE NON RECEPTOR TYPE 4 (PTPN4) REMARK 900 RELATED ID: 3NFL RELATED DB: PDB REMARK 900 3NFL CONTAINS THE SAME PDZ DOMAIN OF THE PROTEIN TYROSINE REMARK 900 PHOSPHATASE NON RECEPTOR TYPE 4 (PTPN4) DBREF 5EYZ A 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EYZ B 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EYZ C 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EYZ D 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 5EYZ E 1 13 PDB 5EYZ 5EYZ 1 13 DBREF 5EYZ F 1 13 PDB 5EYZ 5EYZ 1 13 DBREF 5EYZ G 1 13 PDB 5EYZ 5EYZ 1 13 DBREF 5EYZ H 1 13 PDB 5EYZ 5EYZ 1 13 SEQADV 5EYZ GLY A 498 UNP P29074 EXPRESSION TAG SEQADV 5EYZ GLY B 498 UNP P29074 EXPRESSION TAG SEQADV 5EYZ GLY C 498 UNP P29074 EXPRESSION TAG SEQADV 5EYZ GLY D 498 UNP P29074 EXPRESSION TAG SEQRES 1 A 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 A 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 A 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 A 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 A 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 A 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 A 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 A 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 A 107 ARG PRO ASN SEQRES 1 B 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 B 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 B 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 B 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 B 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 B 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 B 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 B 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 B 107 ARG PRO ASN SEQRES 1 C 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 C 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 C 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 C 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 C 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 C 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 C 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 C 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 C 107 ARG PRO ASN SEQRES 1 D 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 D 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 D 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 D 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 D 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 D 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 D 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 D 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 D 107 ARG PRO ASN SEQRES 1 E 13 SER TRP GLU SER HIS LYS SER GLY ARG GLU THR GLU VAL SEQRES 1 F 13 SER TRP GLU SER HIS LYS SER GLY ARG GLU THR GLU VAL SEQRES 1 G 13 SER TRP GLU SER HIS LYS SER GLY ARG GLU THR GLU VAL SEQRES 1 H 13 SER TRP GLU SER HIS LYS SER GLY ARG GLU THR GLU VAL HET CL C 701 1 HETNAM CL CHLORIDE ION FORMUL 9 CL CL 1- FORMUL 10 HOH *109(H2 O) HELIX 1 AA1 THR A 551 CYS A 556 1 6 HELIX 2 AA2 THR A 578 ALA A 588 1 11 HELIX 3 AA3 SER A 589 ARG A 592 5 4 HELIX 4 AA4 THR B 551 CYS B 556 1 6 HELIX 5 AA5 THR B 578 ALA B 588 1 11 HELIX 6 AA6 THR C 551 CYS C 556 1 6 HELIX 7 AA7 THR C 578 ALA C 588 1 11 HELIX 8 AA8 SER C 589 ARG C 592 5 4 HELIX 9 AA9 THR D 551 CYS D 556 1 6 HELIX 10 AB1 THR D 578 ALA D 588 1 11 SHEET 1 AA1 4 VAL A 516 MET A 520 0 SHEET 2 AA1 4 LEU A 597 ARG A 602 -1 O LEU A 599 N ILE A 518 SHEET 3 AA1 4 GLN A 565 ILE A 569 -1 N VAL A 567 O LEU A 600 SHEET 4 AA1 4 ARG A 572 ASP A 573 -1 O ARG A 572 N ILE A 569 SHEET 1 AA2 3 MET A 540 VAL A 547 0 SHEET 2 AA2 3 PHE A 530 GLY A 535 -1 N GLY A 535 O MET A 540 SHEET 3 AA2 3 GLU E 10 GLU E 12 -1 O THR E 11 N VAL A 532 SHEET 1 AA3 4 VAL B 516 MET B 520 0 SHEET 2 AA3 4 LEU B 597 ARG B 602 -1 O LEU B 599 N ILE B 518 SHEET 3 AA3 4 GLN B 565 ILE B 569 -1 N VAL B 567 O LEU B 600 SHEET 4 AA3 4 ARG B 572 ASP B 573 -1 O ARG B 572 N ILE B 569 SHEET 1 AA4 3 MET B 540 VAL B 547 0 SHEET 2 AA4 3 PHE B 530 GLY B 535 -1 N GLY B 535 O MET B 540 SHEET 3 AA4 3 GLU F 10 VAL F 13 -1 O VAL F 13 N PHE B 530 SHEET 1 AA5 4 VAL C 516 MET C 520 0 SHEET 2 AA5 4 LEU C 597 ARG C 602 -1 O LEU C 597 N MET C 520 SHEET 3 AA5 4 GLN C 565 ILE C 569 -1 N VAL C 567 O LEU C 600 SHEET 4 AA5 4 ARG C 572 ASP C 573 -1 O ARG C 572 N ILE C 569 SHEET 1 AA6 3 MET C 540 VAL C 547 0 SHEET 2 AA6 3 PHE C 530 GLY C 535 -1 N GLY C 535 O MET C 540 SHEET 3 AA6 3 GLU G 10 GLU G 12 -1 O THR G 11 N VAL C 532 SHEET 1 AA7 4 VAL D 516 MET D 520 0 SHEET 2 AA7 4 LEU D 597 ARG D 602 -1 O LEU D 599 N ILE D 518 SHEET 3 AA7 4 GLN D 565 ILE D 569 -1 N VAL D 567 O LEU D 600 SHEET 4 AA7 4 ARG D 572 ASP D 573 -1 O ARG D 572 N ILE D 569 SHEET 1 AA8 3 MET D 540 VAL D 547 0 SHEET 2 AA8 3 PHE D 530 GLY D 535 -1 N GLY D 535 O MET D 540 SHEET 3 AA8 3 GLU H 10 GLU H 12 -1 O THR H 11 N VAL D 532 SSBOND 1 CYS A 590 CYS B 590 1555 1555 2.04 SSBOND 2 CYS C 590 CYS D 590 1555 1555 2.04 CISPEP 1 VAL A 557 PRO A 558 0 0.91 CISPEP 2 HIS A 593 SER A 594 0 -1.77 CISPEP 3 VAL B 557 PRO B 558 0 0.41 CISPEP 4 HIS B 593 SER B 594 0 0.81 CISPEP 5 VAL C 557 PRO C 558 0 0.82 CISPEP 6 SER C 594 GLY C 595 0 -4.71 CISPEP 7 VAL D 557 PRO D 558 0 0.58 SITE 1 AC1 4 ASP A 554 ASN B 514 ASN C 514 HOH C 832 CRYST1 77.710 80.880 170.230 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005874 0.00000 MTRIX1 1 0.894900 0.446200 0.011540 63.13000 1 MTRIX2 1 -0.446100 -0.893100 -0.058420 -65.96000 1 MTRIX3 1 -0.015760 -0.057420 0.998200 0.45250 1 MTRIX1 2 -0.046440 -0.998800 0.014620 -0.30170 1 MTRIX2 2 -0.998800 0.046670 0.016230 -38.89000 1 MTRIX3 2 -0.016890 -0.013840 -0.999800 -42.94000 1 MTRIX1 3 -0.418500 0.908200 0.004394 45.88000 1 MTRIX2 3 0.906700 0.417500 0.060860 -27.88000 1 MTRIX3 3 0.053440 0.029450 -0.998100 -39.31000 1