HEADER ISOMERASE 26-NOV-15 5EZ1 TITLE CRYSTAL STRUCTURE OF CELL BINDING FACTOR 2 FROM HELICOBACTER PYLORI IN TITLE 2 COMPLEX WITH I2CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE HP_0175; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 33-299; COMPND 5 SYNONYM: PPIASE HP_0175,ROTAMASE HP_0175; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: HP_0175; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL BINDING FACTOR 2, PEPTIDYL PROLYL CIS-TRANS ISOMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.SUN,C.H.CHU,Y.C.TSAI REVDAT 2 20-MAR-24 5EZ1 1 JRNL REMARK REVDAT 1 16-MAR-16 5EZ1 0 JRNL AUTH V.NAVEEN,C.H.CHU,B.W.CHEN,Y.C.TSAI,C.D.HSIAO,Y.J.SUN JRNL TITL HELICOBACTER PYLORI CELL BINDING FACTOR 2: INSIGHTS INTO JRNL TITL 2 DOMAIN MOTION. JRNL REF J.STRUCT.BIOL. V. 194 90 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 26850168 JRNL DOI 10.1016/J.JSB.2016.02.002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 29902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6746 - 5.3257 0.99 3142 126 0.2763 0.3041 REMARK 3 2 5.3257 - 4.2326 0.99 2940 158 0.2166 0.2892 REMARK 3 3 4.2326 - 3.6992 0.99 2870 145 0.2139 0.2768 REMARK 3 4 3.6992 - 3.3617 0.99 2843 167 0.2234 0.2809 REMARK 3 5 3.3617 - 3.1211 0.98 2804 160 0.2550 0.3011 REMARK 3 6 3.1211 - 2.9373 0.97 2744 158 0.2580 0.2995 REMARK 3 7 2.9373 - 2.7904 0.97 2745 154 0.2457 0.3255 REMARK 3 8 2.7904 - 2.6690 0.97 2735 157 0.2632 0.3316 REMARK 3 9 2.6690 - 2.5664 0.93 2602 141 0.2627 0.3198 REMARK 3 10 2.5664 - 2.4779 0.72 2018 102 0.2805 0.3453 REMARK 3 11 2.4779 - 2.4005 0.33 929 62 0.2934 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3846 REMARK 3 ANGLE : 1.245 5149 REMARK 3 CHIRALITY : 0.076 556 REMARK 3 PLANARITY : 0.007 665 REMARK 3 DIHEDRAL : 14.503 1523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2779 38.9649 53.2738 REMARK 3 T TENSOR REMARK 3 T11: 0.7374 T22: 0.6561 REMARK 3 T33: 0.6304 T12: -0.0269 REMARK 3 T13: -0.0821 T23: 0.1914 REMARK 3 L TENSOR REMARK 3 L11: 0.0066 L22: 0.0064 REMARK 3 L33: 0.0019 L12: 0.0008 REMARK 3 L13: -0.0002 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0141 S13: -0.0070 REMARK 3 S21: -0.0115 S22: 0.0011 S23: -0.0200 REMARK 3 S31: -0.0088 S32: 0.0109 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2072 31.8233 52.3399 REMARK 3 T TENSOR REMARK 3 T11: 0.4495 T22: 0.2473 REMARK 3 T33: 0.3808 T12: 0.1538 REMARK 3 T13: 0.0830 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 0.1030 L22: 0.2227 REMARK 3 L33: 0.1817 L12: -0.0246 REMARK 3 L13: 0.1289 L23: 0.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: 0.1095 S13: 0.1766 REMARK 3 S21: -0.0572 S22: -0.0660 S23: -0.0699 REMARK 3 S31: -0.0854 S32: 0.0377 S33: 0.0393 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4022 10.9669 46.5527 REMARK 3 T TENSOR REMARK 3 T11: 0.3901 T22: 0.2906 REMARK 3 T33: 0.2552 T12: 0.1332 REMARK 3 T13: 0.1212 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.0146 L22: 0.0508 REMARK 3 L33: 0.0806 L12: -0.0189 REMARK 3 L13: 0.0232 L23: -0.0277 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0369 S13: 0.0368 REMARK 3 S21: -0.0202 S22: -0.0926 S23: 0.0194 REMARK 3 S31: 0.0327 S32: 0.0713 S33: -0.0490 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3350 2.5488 20.3616 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.3297 REMARK 3 T33: 0.2774 T12: 0.0584 REMARK 3 T13: 0.0218 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.0866 L22: 0.0382 REMARK 3 L33: 0.0358 L12: 0.0133 REMARK 3 L13: 0.0422 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.0674 S13: 0.0064 REMARK 3 S21: 0.0406 S22: 0.0125 S23: -0.0672 REMARK 3 S31: 0.0352 S32: 0.0145 S33: -0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7485 -3.8810 -0.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.0380 REMARK 3 T33: 0.2464 T12: 0.2688 REMARK 3 T13: 0.2135 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.1998 L22: 0.1124 REMARK 3 L33: 0.0606 L12: -0.0810 REMARK 3 L13: -0.0603 L23: 0.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.1122 S12: -0.0977 S13: -0.1370 REMARK 3 S21: 0.0956 S22: 0.0209 S23: 0.0010 REMARK 3 S31: 0.1886 S32: 0.0979 S33: -0.2060 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3506 -0.6206 6.4595 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.3378 REMARK 3 T33: 0.2432 T12: 0.4419 REMARK 3 T13: 0.0812 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.1756 L22: 0.1014 REMARK 3 L33: 0.0120 L12: -0.1384 REMARK 3 L13: -0.0444 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.1906 S13: -0.1051 REMARK 3 S21: 0.1047 S22: -0.0349 S23: -0.1863 REMARK 3 S31: 0.1824 S32: 0.3008 S33: -0.2765 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9111 1.5173 36.1516 REMARK 3 T TENSOR REMARK 3 T11: 0.3535 T22: 0.3160 REMARK 3 T33: 0.2298 T12: 0.2173 REMARK 3 T13: 0.1846 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.0857 REMARK 3 L33: 0.0771 L12: -0.0032 REMARK 3 L13: 0.0240 L23: 0.0105 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0823 S13: -0.0468 REMARK 3 S21: 0.1908 S22: 0.0614 S23: 0.0488 REMARK 3 S31: 0.0799 S32: 0.0072 S33: 0.2214 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2379 9.4519 50.2026 REMARK 3 T TENSOR REMARK 3 T11: 0.6054 T22: 0.3319 REMARK 3 T33: 0.3796 T12: 0.1315 REMARK 3 T13: 0.0648 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.1393 L22: 0.1754 REMARK 3 L33: 0.4985 L12: -0.1186 REMARK 3 L13: -0.1643 L23: 0.0758 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.1262 S13: -0.1526 REMARK 3 S21: -0.0352 S22: -0.0983 S23: 0.3206 REMARK 3 S31: 0.2970 S32: -0.1658 S33: -0.0328 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6775 33.4010 12.4719 REMARK 3 T TENSOR REMARK 3 T11: 0.5244 T22: 0.5805 REMARK 3 T33: 0.6478 T12: 0.0450 REMARK 3 T13: 0.0189 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 0.0898 L22: 0.0537 REMARK 3 L33: 0.0612 L12: -0.0609 REMARK 3 L13: 0.0615 L23: -0.0190 REMARK 3 S TENSOR REMARK 3 S11: 0.1809 S12: -0.2304 S13: 0.1113 REMARK 3 S21: 0.1890 S22: -0.1119 S23: -0.0912 REMARK 3 S31: -0.1147 S32: -0.0875 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7967 31.4397 46.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.5769 T22: 0.4484 REMARK 3 T33: 0.3823 T12: -0.0028 REMARK 3 T13: -0.0351 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 0.0156 L22: 0.0402 REMARK 3 L33: 0.0483 L12: 0.0033 REMARK 3 L13: -0.0113 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: 0.1114 S13: 0.0206 REMARK 3 S21: 0.0463 S22: 0.0891 S23: 0.0398 REMARK 3 S31: 0.0498 S32: -0.2039 S33: -0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33151 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 44% JAFFAMINE M-600 PH 7.0, 50 MM REMARK 280 SUCCINATE ACID PH 3.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.14233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 244.28467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 244.28467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.14233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 544 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 THR A 34 REMARK 465 LYS A 35 REMARK 465 LYS A 36 REMARK 465 THR A 37 REMARK 465 THR A 38 REMARK 465 ASP A 39 REMARK 465 SER A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 VAL A 44 REMARK 465 LEU A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 VAL A 48 REMARK 465 ASP A 49 REMARK 465 GLY A 50 REMARK 465 ARG A 51 REMARK 465 PRO A 52 REMARK 465 ILE A 53 REMARK 465 GLN A 63 REMARK 465 ARG A 64 REMARK 465 ASN A 65 REMARK 465 PRO A 66 REMARK 465 ASN A 67 REMARK 465 PHE A 68 REMARK 465 ASP A 69 REMARK 465 PHE A 70 REMARK 465 ASP A 71 REMARK 465 LYS A 72 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 ILE A 297 REMARK 465 ASN A 298 REMARK 465 LYS A 299 REMARK 465 LEU A 300 REMARK 465 GLU A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 MET B 31 REMARK 465 GLY B 32 REMARK 465 ASN B 33 REMARK 465 THR B 34 REMARK 465 LYS B 35 REMARK 465 LYS B 36 REMARK 465 THR B 37 REMARK 465 THR B 38 REMARK 465 ASP B 39 REMARK 465 SER B 40 REMARK 465 SER B 41 REMARK 465 ALA B 42 REMARK 465 GLY B 43 REMARK 465 VAL B 44 REMARK 465 LEU B 45 REMARK 465 ALA B 46 REMARK 465 THR B 47 REMARK 465 VAL B 48 REMARK 465 ASP B 49 REMARK 465 GLY B 50 REMARK 465 ARG B 51 REMARK 465 PRO B 52 REMARK 465 ILE B 53 REMARK 465 GLN B 63 REMARK 465 ARG B 64 REMARK 465 ASN B 65 REMARK 465 PRO B 66 REMARK 465 ASN B 67 REMARK 465 PHE B 68 REMARK 465 ASP B 69 REMARK 465 PHE B 70 REMARK 465 ASP B 71 REMARK 465 LYS B 72 REMARK 465 LEU B 73 REMARK 465 LYS B 74 REMARK 465 ASN B 298 REMARK 465 LYS B 299 REMARK 465 LEU B 300 REMARK 465 GLU B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 577 O HOH A 578 1.87 REMARK 500 O HOH B 545 O HOH B 569 1.91 REMARK 500 OG1 THR B 197 O HOH B 501 1.91 REMARK 500 O PHE A 244 O HOH A 501 1.92 REMARK 500 O HOH A 550 O HOH A 572 1.94 REMARK 500 O HOH A 573 O HOH B 573 1.95 REMARK 500 NE2 GLN A 215 O HOH A 502 1.95 REMARK 500 NH1 ARG B 290 O HOH B 502 1.99 REMARK 500 NZ LYS B 203 O HOH B 503 2.01 REMARK 500 NE2 GLN B 206 O HOH B 504 2.04 REMARK 500 O HOH A 562 O HOH A 570 2.04 REMARK 500 OD2 ASP B 210 O HOH B 505 2.05 REMARK 500 O HOH A 562 O HOH A 565 2.08 REMARK 500 O VAL A 296 O HOH A 503 2.09 REMARK 500 O HOH A 522 O HOH A 547 2.11 REMARK 500 OD1 ASP A 234 O HOH A 504 2.13 REMARK 500 OE1 GLU A 186 O HOH A 505 2.15 REMARK 500 N THR B 54 O HOH B 506 2.16 REMARK 500 O HOH B 516 O HOH B 567 2.17 REMARK 500 O HOH B 547 O HOH B 570 2.17 REMARK 500 OH TYR A 250 O HOH A 506 2.17 REMARK 500 O HOH A 530 O HOH A 544 2.18 REMARK 500 O ALA B 187 O HOH B 508 2.19 REMARK 500 O THR A 259 O HOH A 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 544 O HOH B 560 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 -106.33 51.20 REMARK 500 ASN A 217 30.52 -97.62 REMARK 500 LYS A 254 116.95 -164.79 REMARK 500 ASP B 57 -111.66 50.88 REMARK 500 ASP B 59 150.27 -47.69 REMARK 500 ASN B 217 32.32 -97.42 REMARK 500 LYS B 254 114.00 -167.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 578 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 573 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ICB A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ICB B 401 DBREF 5EZ1 A 33 299 UNP P56112 Y175_HELPY 33 299 DBREF 5EZ1 B 33 299 UNP P56112 Y175_HELPY 33 299 SEQADV 5EZ1 MET A 31 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 GLY A 32 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 LEU A 300 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 GLU A 301 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS A 302 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS A 303 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS A 304 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS A 305 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS A 306 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS A 307 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 MET B 31 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 GLY B 32 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 LEU B 300 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 GLU B 301 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS B 302 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS B 303 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS B 304 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS B 305 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS B 306 UNP P56112 EXPRESSION TAG SEQADV 5EZ1 HIS B 307 UNP P56112 EXPRESSION TAG SEQRES 1 A 277 MET GLY ASN THR LYS LYS THR THR ASP SER SER ALA GLY SEQRES 2 A 277 VAL LEU ALA THR VAL ASP GLY ARG PRO ILE THR LYS SER SEQRES 3 A 277 ASP PHE ASP MET ILE LYS GLN ARG ASN PRO ASN PHE ASP SEQRES 4 A 277 PHE ASP LYS LEU LYS GLU LYS GLU LYS GLU ALA LEU ILE SEQRES 5 A 277 ASP GLN ALA ILE ARG THR ALA LEU VAL GLU ASN GLU ALA SEQRES 6 A 277 LYS THR GLU LYS LEU ASP SER THR PRO GLU PHE LYS ALA SEQRES 7 A 277 MET MET GLU ALA VAL LYS LYS GLN ALA LEU VAL GLU PHE SEQRES 8 A 277 TRP ALA LYS LYS GLN ALA GLU GLU VAL LYS LYS VAL GLN SEQRES 9 A 277 ILE PRO GLU LYS GLU MET GLN ASP PHE TYR ASN ALA ASN SEQRES 10 A 277 LYS ASP GLN LEU PHE VAL LYS GLN GLU ALA HIS ALA ARG SEQRES 11 A 277 HIS ILE LEU VAL LYS THR GLU ASP GLU ALA LYS ARG ILE SEQRES 12 A 277 ILE SER GLU ILE ASP LYS GLN PRO LYS ALA LYS LYS GLU SEQRES 13 A 277 ALA LYS PHE ILE GLU LEU ALA ASN ARG ASP THR ILE ASP SEQRES 14 A 277 PRO ASN SER LYS ASN ALA GLN ASN GLY GLY ASP LEU GLY SEQRES 15 A 277 LYS PHE GLN LYS ASN GLN MET ALA PRO ASP PHE SER LYS SEQRES 16 A 277 ALA ALA PHE ALA LEU THR PRO GLY ASP TYR THR LYS THR SEQRES 17 A 277 PRO VAL LYS THR GLU PHE GLY TYR HIS ILE ILE TYR LEU SEQRES 18 A 277 ILE SER LYS ASP SER PRO VAL THR TYR THR TYR GLU GLN SEQRES 19 A 277 ALA LYS PRO THR ILE LYS GLY MET LEU GLN GLU LYS LEU SEQRES 20 A 277 PHE GLN GLU ARG MET ASN GLN ARG ILE GLU GLU LEU ARG SEQRES 21 A 277 LYS HIS ALA LYS ILE VAL ILE ASN LYS LEU GLU HIS HIS SEQRES 22 A 277 HIS HIS HIS HIS SEQRES 1 B 277 MET GLY ASN THR LYS LYS THR THR ASP SER SER ALA GLY SEQRES 2 B 277 VAL LEU ALA THR VAL ASP GLY ARG PRO ILE THR LYS SER SEQRES 3 B 277 ASP PHE ASP MET ILE LYS GLN ARG ASN PRO ASN PHE ASP SEQRES 4 B 277 PHE ASP LYS LEU LYS GLU LYS GLU LYS GLU ALA LEU ILE SEQRES 5 B 277 ASP GLN ALA ILE ARG THR ALA LEU VAL GLU ASN GLU ALA SEQRES 6 B 277 LYS THR GLU LYS LEU ASP SER THR PRO GLU PHE LYS ALA SEQRES 7 B 277 MET MET GLU ALA VAL LYS LYS GLN ALA LEU VAL GLU PHE SEQRES 8 B 277 TRP ALA LYS LYS GLN ALA GLU GLU VAL LYS LYS VAL GLN SEQRES 9 B 277 ILE PRO GLU LYS GLU MET GLN ASP PHE TYR ASN ALA ASN SEQRES 10 B 277 LYS ASP GLN LEU PHE VAL LYS GLN GLU ALA HIS ALA ARG SEQRES 11 B 277 HIS ILE LEU VAL LYS THR GLU ASP GLU ALA LYS ARG ILE SEQRES 12 B 277 ILE SER GLU ILE ASP LYS GLN PRO LYS ALA LYS LYS GLU SEQRES 13 B 277 ALA LYS PHE ILE GLU LEU ALA ASN ARG ASP THR ILE ASP SEQRES 14 B 277 PRO ASN SER LYS ASN ALA GLN ASN GLY GLY ASP LEU GLY SEQRES 15 B 277 LYS PHE GLN LYS ASN GLN MET ALA PRO ASP PHE SER LYS SEQRES 16 B 277 ALA ALA PHE ALA LEU THR PRO GLY ASP TYR THR LYS THR SEQRES 17 B 277 PRO VAL LYS THR GLU PHE GLY TYR HIS ILE ILE TYR LEU SEQRES 18 B 277 ILE SER LYS ASP SER PRO VAL THR TYR THR TYR GLU GLN SEQRES 19 B 277 ALA LYS PRO THR ILE LYS GLY MET LEU GLN GLU LYS LEU SEQRES 20 B 277 PHE GLN GLU ARG MET ASN GLN ARG ILE GLU GLU LEU ARG SEQRES 21 B 277 LYS HIS ALA LYS ILE VAL ILE ASN LYS LEU GLU HIS HIS SEQRES 22 B 277 HIS HIS HIS HIS HET ICB A 401 12 HET ICB B 401 12 HETNAM ICB 1H-INDOLE-2-CARBOXYLIC ACID FORMUL 3 ICB 2(C9 H7 N O2) FORMUL 5 HOH *151(H2 O) HELIX 1 AA1 LYS A 76 GLU A 98 1 23 HELIX 2 AA2 LYS A 99 SER A 102 5 4 HELIX 3 AA3 THR A 103 LYS A 131 1 29 HELIX 4 AA4 PRO A 136 PHE A 152 1 17 HELIX 5 AA5 THR A 166 LYS A 179 1 14 HELIX 6 AA6 PRO A 181 ALA A 183 5 3 HELIX 7 AA7 LYS A 184 THR A 197 1 14 HELIX 8 AA8 ASP A 199 GLN A 206 1 8 HELIX 9 AA9 ALA A 220 LEU A 230 1 11 HELIX 10 AB1 THR A 261 HIS A 292 1 32 HELIX 11 AB2 LYS B 76 GLU B 98 1 23 HELIX 12 AB3 LYS B 99 SER B 102 5 4 HELIX 13 AB4 THR B 103 LYS B 131 1 29 HELIX 14 AB5 PRO B 136 PHE B 152 1 17 HELIX 15 AB6 THR B 166 LYS B 179 1 14 HELIX 16 AB7 PRO B 181 THR B 197 1 17 HELIX 17 AB8 ASP B 199 GLN B 206 1 8 HELIX 18 AB9 ALA B 220 LEU B 230 1 11 HELIX 19 AC1 THR B 261 HIS B 292 1 32 SHEET 1 AA1 3 ASP A 59 MET A 60 0 SHEET 2 AA1 3 LYS A 55 SER A 56 -1 N SER A 56 O ASP A 59 SHEET 3 AA1 3 ILE B 295 VAL B 296 -1 O VAL B 296 N LYS A 55 SHEET 1 AA2 2 VAL A 153 LYS A 154 0 SHEET 2 AA2 2 VAL A 258 THR A 259 -1 O VAL A 258 N LYS A 154 SHEET 1 AA3 4 ASP A 210 PHE A 214 0 SHEET 2 AA3 4 ALA A 157 VAL A 164 -1 N ALA A 159 O LEU A 211 SHEET 3 AA3 4 GLY A 245 LYS A 254 -1 O SER A 253 N HIS A 158 SHEET 4 AA3 4 VAL A 240 THR A 242 -1 N VAL A 240 O HIS A 247 SHEET 1 AA4 2 LYS B 55 SER B 56 0 SHEET 2 AA4 2 ASP B 59 MET B 60 -1 O ASP B 59 N SER B 56 SHEET 1 AA5 2 VAL B 153 LYS B 154 0 SHEET 2 AA5 2 VAL B 258 THR B 259 -1 O VAL B 258 N LYS B 154 SHEET 1 AA6 4 ASP B 210 GLN B 215 0 SHEET 2 AA6 4 GLU B 156 VAL B 164 -1 N ALA B 157 O PHE B 214 SHEET 3 AA6 4 GLY B 245 LYS B 254 -1 O SER B 253 N HIS B 158 SHEET 4 AA6 4 VAL B 240 THR B 242 -1 N VAL B 240 O HIS B 247 SITE 1 AC1 5 HIS A 161 LEU A 163 ASP A 199 MET A 219 SITE 2 AC1 5 PHE A 244 SITE 1 AC2 6 HIS B 161 LEU B 163 ASP B 199 MET B 219 SITE 2 AC2 6 PHE B 223 PHE B 244 CRYST1 61.998 61.998 366.427 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016130 0.009312 0.000000 0.00000 SCALE2 0.000000 0.018625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002729 0.00000