HEADER OXIDOREDUCTASE 27-NOV-15 5EZW TITLE THIOSULFATE BOUND RAT CYSTEINE DIOXYGENASE Y157H VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DIOXYGENASE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DIOXYGENASE TYPE I,CDO-I; COMPND 5 EC: 1.13.11.20; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CDO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPR-IBA1/RATCDO/Y155H_VARIANT KEYWDS THIOETHER BOND, POST-TRANSLATIONAL MODIFICATION, POST TRANSLATIONAL, KEYWDS 2 POSTTRANSLATIONAL, CYSTEINE DIOXYGENASE, NON-HEME MONO-IRON, CUPIN, KEYWDS 3 TYROSINE TO HISTIDINE SUBSTITUTION, BETA BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,E.P.TCHESNOKOV,G.N.L.JAMESON,S.M.WILBANKS REVDAT 2 27-SEP-23 5EZW 1 REMARK REVDAT 1 09-NOV-16 5EZW 0 JRNL AUTH M.FELLNER,S.M.WILBANKS JRNL TITL THIOSULFATE BOUND RAT CYSTEINE DIOXYGENASE Y157H VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10-2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 24543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1183 - 4.1527 1.00 2849 129 0.1455 0.1454 REMARK 3 2 4.1527 - 3.2982 1.00 2837 131 0.1452 0.1312 REMARK 3 3 3.2982 - 2.8819 1.00 2821 145 0.1611 0.1869 REMARK 3 4 2.8819 - 2.6187 1.00 2819 160 0.1767 0.2232 REMARK 3 5 2.6187 - 2.4311 1.00 2798 180 0.1785 0.2239 REMARK 3 6 2.4311 - 2.2879 1.00 2809 162 0.1805 0.1994 REMARK 3 7 2.2879 - 2.1734 0.99 2808 145 0.1677 0.1784 REMARK 3 8 2.1734 - 2.0788 1.00 2803 136 0.1650 0.1879 REMARK 3 9 2.0788 - 1.9988 0.99 2780 169 0.1846 0.1987 REMARK 3 10 1.9988 - 1.9298 0.99 2799 155 0.1821 0.1845 REMARK 3 11 1.9298 - 1.8695 0.99 2786 149 0.1827 0.2224 REMARK 3 12 1.8695 - 1.8161 0.99 2792 125 0.1871 0.2528 REMARK 3 13 1.8161 - 1.7683 0.98 2777 177 0.2053 0.2317 REMARK 3 14 1.7683 - 1.7252 0.91 2573 128 0.2479 0.3151 REMARK 3 15 1.7252 - 1.6859 0.78 2213 114 0.3096 0.3355 REMARK 3 16 1.6859 - 1.6501 0.69 1924 88 0.4006 0.4675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1583 REMARK 3 ANGLE : 0.858 2137 REMARK 3 CHIRALITY : 0.053 229 REMARK 3 PLANARITY : 0.005 278 REMARK 3 DIHEDRAL : 13.765 580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5425 -19.0819 9.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1595 REMARK 3 T33: 0.1844 T12: 0.0140 REMARK 3 T13: -0.0011 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 6.9347 L22: 8.9195 REMARK 3 L33: 8.3031 L12: 1.8265 REMARK 3 L13: -0.2741 L23: -2.8189 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.3983 S13: -0.6104 REMARK 3 S21: -0.5221 S22: 0.0666 S23: 0.1579 REMARK 3 S31: 0.3635 S32: -0.3840 S33: -0.0658 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8680 -10.7960 8.1753 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.1674 REMARK 3 T33: 0.1650 T12: 0.0061 REMARK 3 T13: -0.0308 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 6.5028 L22: 7.3644 REMARK 3 L33: 8.6532 L12: -0.2163 REMARK 3 L13: -0.5539 L23: -4.3898 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.4282 S13: 0.1321 REMARK 3 S21: -0.3268 S22: 0.1373 S23: 0.4023 REMARK 3 S31: -0.0121 S32: -0.5554 S33: -0.2014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7521 -9.7829 25.6356 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1183 REMARK 3 T33: 0.0683 T12: 0.0078 REMARK 3 T13: 0.0003 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.9335 L22: 7.6049 REMARK 3 L33: 4.4199 L12: 0.5778 REMARK 3 L13: 1.7011 L23: 3.5644 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: -0.1156 S13: -0.0977 REMARK 3 S21: 0.1551 S22: 0.0946 S23: -0.2724 REMARK 3 S31: 0.0811 S32: 0.1132 S33: -0.1369 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0802 -2.7128 19.6328 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.1254 REMARK 3 T33: 0.1324 T12: -0.0105 REMARK 3 T13: -0.0042 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.6035 L22: 1.8763 REMARK 3 L33: 1.6766 L12: -0.6388 REMARK 3 L13: 0.2122 L23: 0.3274 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0184 S13: -0.0204 REMARK 3 S21: -0.0663 S22: 0.0531 S23: -0.0156 REMARK 3 S31: -0.0374 S32: -0.0315 S33: -0.0245 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0311 16.5222 20.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.3725 T22: 0.2388 REMARK 3 T33: 0.3692 T12: 0.1241 REMARK 3 T13: -0.0475 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 6.8297 L22: 9.7988 REMARK 3 L33: 6.2407 L12: -1.1763 REMARK 3 L13: -1.5015 L23: 1.6396 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: -0.1871 S13: 1.0884 REMARK 3 S21: 0.2231 S22: -0.0185 S23: 0.7678 REMARK 3 S31: -1.2931 S32: -0.7869 S33: 0.0610 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5692 -4.8834 23.9788 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.2303 REMARK 3 T33: 0.2705 T12: -0.0162 REMARK 3 T13: 0.0272 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.4880 L22: 3.3511 REMARK 3 L33: 4.5237 L12: -0.9541 REMARK 3 L13: -1.1535 L23: 0.4841 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: -0.3188 S13: -0.2085 REMARK 3 S21: 0.2826 S22: -0.0217 S23: 0.5487 REMARK 3 S31: -0.0867 S32: -0.3615 S33: -0.0039 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3093 3.9014 19.5493 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1514 REMARK 3 T33: 0.1539 T12: 0.0327 REMARK 3 T13: -0.0068 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 5.8479 L22: 7.0010 REMARK 3 L33: 2.0373 L12: -2.9425 REMARK 3 L13: 2.2105 L23: -4.9707 REMARK 3 S TENSOR REMARK 3 S11: -0.1940 S12: -0.1282 S13: -0.0275 REMARK 3 S21: 0.0959 S22: 0.0885 S23: 0.2698 REMARK 3 S31: -0.3412 S32: -0.5443 S33: 0.2670 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7060 -0.6757 21.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1340 REMARK 3 T33: 0.1586 T12: 0.0052 REMARK 3 T13: 0.0013 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.1059 L22: 1.7988 REMARK 3 L33: 2.4744 L12: -0.5349 REMARK 3 L13: 0.5515 L23: 0.4379 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.0004 S13: 0.0679 REMARK 3 S21: -0.0621 S22: 0.0142 S23: 0.0297 REMARK 3 S31: -0.0560 S32: 0.0315 S33: -0.0287 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6050 15.8575 21.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.2333 REMARK 3 T33: 0.3415 T12: 0.0092 REMARK 3 T13: -0.0614 T23: -0.0932 REMARK 3 L TENSOR REMARK 3 L11: 2.0937 L22: 6.9994 REMARK 3 L33: 7.5766 L12: -4.7587 REMARK 3 L13: -6.1649 L23: 2.8861 REMARK 3 S TENSOR REMARK 3 S11: 0.1769 S12: -0.7512 S13: 1.1445 REMARK 3 S21: 0.1523 S22: 0.2847 S23: -0.7279 REMARK 3 S31: -0.8306 S32: 0.2981 S33: -0.3457 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4931 -1.6376 18.5306 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.2009 REMARK 3 T33: 0.2801 T12: -0.0358 REMARK 3 T13: 0.0092 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 4.7131 L22: 6.4458 REMARK 3 L33: 4.6062 L12: -4.7429 REMARK 3 L13: -1.0611 L23: 0.5125 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.2817 S13: 0.6236 REMARK 3 S21: -0.1234 S22: 0.1474 S23: -0.0653 REMARK 3 S31: -0.2347 S32: 0.3326 S33: -0.1124 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX OPTICS REMARK 200 OPTICS : OSMIC VARIMAX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 26.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 24.10 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4KWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS OF 3 MICROL OF REMARK 280 APPROXIMATELY 25 MG/ML Y157H-CDO (20MM TRIS-HCL, PH 8.0) AND 1 REMARK 280 MICROL RESERVOIR BUFFER CONTAINING SEEDS FROM WT-CDO WERE REMARK 280 ALLOWED TO EQUILIBRATE ABOVE THE RESERVOIR BUFFER (26% (W/V) REMARK 280 POLYETHYLENE GLYCOL 4000, 200 MM AMMONIUM ACETATE, 100 MM SODIUM REMARK 280 CITRATE)., PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.21000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.87500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.81500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.87500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.60500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.87500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.81500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.87500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.60500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.21000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 191 REMARK 465 THR A 192 REMARK 465 THR A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ASN A 200 REMARK 465 SER A 201 REMARK 465 ALA A 202 REMARK 465 TRP A 203 REMARK 465 SER A 204 REMARK 465 HIS A 205 REMARK 465 PRO A 206 REMARK 465 GLN A 207 REMARK 465 PHE A 208 REMARK 465 GLU A 209 REMARK 465 LYS A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 5 O HOH A 401 2.05 REMARK 500 O HOH A 557 O HOH A 598 2.08 REMARK 500 O HOH A 581 O HOH A 585 2.14 REMARK 500 OE1 GLU A 38 O HOH A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 128 -7.12 76.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 103.0 REMARK 620 3 HIS A 140 NE2 97.2 97.9 REMARK 620 4 THJ A 302 S2 117.5 125.3 110.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ A 302 DBREF 5EZW A 1 200 UNP P21816 CDO1_RAT 1 200 SEQADV 5EZW HIS A 157 UNP P21816 TYR 157 ENGINEERED MUTATION SEQADV 5EZW SER A 201 UNP P21816 EXPRESSION TAG SEQADV 5EZW ALA A 202 UNP P21816 EXPRESSION TAG SEQADV 5EZW TRP A 203 UNP P21816 EXPRESSION TAG SEQADV 5EZW SER A 204 UNP P21816 EXPRESSION TAG SEQADV 5EZW HIS A 205 UNP P21816 EXPRESSION TAG SEQADV 5EZW PRO A 206 UNP P21816 EXPRESSION TAG SEQADV 5EZW GLN A 207 UNP P21816 EXPRESSION TAG SEQADV 5EZW PHE A 208 UNP P21816 EXPRESSION TAG SEQADV 5EZW GLU A 209 UNP P21816 EXPRESSION TAG SEQADV 5EZW LYS A 210 UNP P21816 EXPRESSION TAG SEQRES 1 A 210 MET GLU ARG THR GLU LEU LEU LYS PRO ARG THR LEU ALA SEQRES 2 A 210 ASP LEU ILE ARG ILE LEU HIS GLU LEU PHE ALA GLY ASP SEQRES 3 A 210 GLU VAL ASN VAL GLU GLU VAL GLN ALA VAL LEU GLU ALA SEQRES 4 A 210 TYR GLU SER ASN PRO ALA GLU TRP ALA LEU TYR ALA LYS SEQRES 5 A 210 PHE ASP GLN TYR ARG TYR THR ARG ASN LEU VAL ASP GLN SEQRES 6 A 210 GLY ASN GLY LYS PHE ASN LEU MET ILE LEU CYS TRP GLY SEQRES 7 A 210 GLU GLY HIS GLY SER SER ILE HIS ASP HIS THR ASP SER SEQRES 8 A 210 HIS CYS PHE LEU LYS LEU LEU GLN GLY ASN LEU LYS GLU SEQRES 9 A 210 THR LEU PHE ASP TRP PRO ASP LYS LYS SER ASN GLU MET SEQRES 10 A 210 ILE LYS LYS SER GLU ARG THR LEU ARG GLU ASN GLN CYS SEQRES 11 A 210 ALA TYR ILE ASN ASP SER ILE GLY LEU HIS ARG VAL GLU SEQRES 12 A 210 ASN VAL SER HIS THR GLU PRO ALA VAL SER LEU HIS LEU SEQRES 13 A 210 HIS SER PRO PRO PHE ASP THR CYS HIS ALA PHE ASP GLN SEQRES 14 A 210 ARG THR GLY HIS LYS ASN LYS VAL THR MET THR PHE HIS SEQRES 15 A 210 SER LYS PHE GLY ILE ARG THR PRO PHE THR THR SER GLY SEQRES 16 A 210 SER LEU GLU ASN ASN SER ALA TRP SER HIS PRO GLN PHE SEQRES 17 A 210 GLU LYS HET FE2 A 301 1 HET THJ A 302 5 HETNAM FE2 FE (II) ION HETNAM THJ THIOSULFATE FORMUL 2 FE2 FE 2+ FORMUL 3 THJ O3 S2 2- FORMUL 4 HOH *243(H2 O) HELIX 1 AA1 THR A 11 PHE A 23 1 13 HELIX 2 AA2 ASN A 29 TYR A 40 1 12 HELIX 3 AA3 ASN A 43 ALA A 48 1 6 HELIX 4 AA4 LEU A 49 ALA A 51 5 3 HELIX 5 AA5 GLN A 65 LYS A 69 5 5 SHEET 1 AA1 7 CYS A 130 ILE A 133 0 SHEET 2 AA1 7 HIS A 92 GLN A 99 -1 N LEU A 95 O ALA A 131 SHEET 3 AA1 7 ALA A 151 SER A 158 -1 O LEU A 154 N LYS A 96 SHEET 4 AA1 7 ASN A 71 TRP A 77 -1 N MET A 73 O HIS A 155 SHEET 5 AA1 7 THR A 59 ASP A 64 -1 N VAL A 63 O LEU A 72 SHEET 6 AA1 7 SER A 183 LYS A 184 1 O SER A 183 N LEU A 62 SHEET 7 AA1 7 ILE A 187 ARG A 188 -1 O ILE A 187 N LYS A 184 SHEET 1 AA2 3 ILE A 85 HIS A 86 0 SHEET 2 AA2 3 THR A 163 PHE A 167 -1 O PHE A 167 N ILE A 85 SHEET 3 AA2 3 LYS A 174 THR A 178 -1 O VAL A 177 N CYS A 164 SHEET 1 AA3 3 LYS A 119 LEU A 125 0 SHEET 2 AA3 3 LEU A 102 PHE A 107 -1 N LEU A 106 O LYS A 120 SHEET 3 AA3 3 LEU A 139 GLU A 143 -1 O GLU A 143 N LYS A 103 LINK NE2 HIS A 86 FE FE2 A 301 1555 1555 2.01 LINK NE2 HIS A 88 FE FE2 A 301 1555 1555 2.06 LINK NE2 HIS A 140 FE FE2 A 301 1555 1555 2.09 LINK FE FE2 A 301 S2 THJ A 302 1555 1555 2.25 CISPEP 1 SER A 158 PRO A 159 0 -3.96 SITE 1 AC1 4 HIS A 86 HIS A 88 HIS A 140 THJ A 302 SITE 1 AC2 9 ARG A 60 HIS A 86 HIS A 88 HIS A 140 SITE 2 AC2 9 HIS A 155 HIS A 157 FE2 A 301 HOH A 469 SITE 3 AC2 9 HOH A 500 CRYST1 57.750 57.750 122.420 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008169 0.00000