HEADER HYDROLASE 27-NOV-15 5F03 TITLE TRYPTASE B2 IN COMPLEX WITH 5-(3-AMINOMETHYL-PHENOXYMETHYL)-3-[3-(2- TITLE 2 CHLORO-PYRIDIN-3-YLETHYNYL)-PHENYL]-OXAZOLIDIN-2-ONE; COMPOUND WITH TITLE 3 TRIFLUORO-ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTASE BETA-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRYPTASE-2,TRYPTASE II; COMPND 5 EC: 3.4.21.59; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: MAST CELLS; SOURCE 6 GENE: TPSB2, TPS2; SOURCE 7 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS HUMAN TRYPTASE, SERINE PROTEINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BANNER,J.BENZ,C.JOSEPH,A.KUGLSTATTER REVDAT 3 20-MAR-19 5F03 1 COMPND SOURCE DBREF SEQADV REVDAT 2 25-MAY-16 5F03 1 JRNL REVDAT 1 24-FEB-16 5F03 0 JRNL AUTH B.KUHN,W.GUBA,J.HERT,D.BANNER,C.BISSANTZ,S.CECCARELLI, JRNL AUTH 2 W.HAAP,M.KORNER,A.KUGLSTATTER,C.LERNER,P.MATTEI,W.NEIDHART, JRNL AUTH 3 E.PINARD,M.G.RUDOLPH,T.SCHULZ-GASCH,T.WOLTERING,M.STAHL JRNL TITL A REAL-WORLD PERSPECTIVE ON MOLECULAR DESIGN. JRNL REF J.MED.CHEM. V. 59 4087 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26878596 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01875 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2218 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 689 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4171 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5735 ; 1.442 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 6.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;27.519 ;23.511 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 613 ;14.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;12.039 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3325 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2027 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2808 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 543 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2565 ; 0.680 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4087 ; 1.074 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1926 ; 1.675 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1648 ; 2.420 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4230 9.3430 -1.2690 REMARK 3 T TENSOR REMARK 3 T11: -0.0926 T22: -0.1341 REMARK 3 T33: -0.1106 T12: -0.0065 REMARK 3 T13: -0.0044 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.7339 L22: 1.3302 REMARK 3 L33: 0.7634 L12: 0.1822 REMARK 3 L13: -0.2776 L23: -0.4472 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0698 S13: -0.0287 REMARK 3 S21: 0.0795 S22: -0.0122 S23: -0.0705 REMARK 3 S31: 0.0181 S32: 0.0634 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6150 -28.0030 -23.8800 REMARK 3 T TENSOR REMARK 3 T11: -0.0381 T22: -0.1588 REMARK 3 T33: -0.0904 T12: 0.0012 REMARK 3 T13: -0.0026 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.8339 L22: 0.5694 REMARK 3 L33: 1.9095 L12: 0.0967 REMARK 3 L13: 0.1726 L23: 0.1565 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0602 S13: -0.0196 REMARK 3 S21: 0.1207 S22: 0.0026 S23: 0.0020 REMARK 3 S31: 0.2216 S32: -0.0685 S33: -0.0228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 67.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0103 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: IN-HOUSE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1 M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.31667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.31667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 244 REMARK 465 LYS A 245 REMARK 465 PRO A 246 REMARK 465 LYS B 245 REMARK 465 PRO B 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 239 O HOH A 401 2.16 REMARK 500 O TYR A 75 O HOH A 402 2.18 REMARK 500 O HOH A 432 O HOH A 527 2.19 REMARK 500 O HOH A 615 O HOH A 675 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 74 -26.49 82.61 REMARK 500 TYR A 74 -21.84 82.61 REMARK 500 GLN A 79 60.99 -150.84 REMARK 500 PHE A 130 73.85 56.53 REMARK 500 ASN A 185 -157.13 -145.81 REMARK 500 SER A 214 -65.86 -124.20 REMARK 500 TYR B 74 -14.97 80.31 REMARK 500 TYR B 74 -17.10 80.31 REMARK 500 TYR B 95 -24.75 -141.11 REMARK 500 ASN B 185 -159.38 -149.75 REMARK 500 ASN B 204 36.09 38.75 REMARK 500 SER B 214 -64.82 -122.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 759 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5TA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5TA B 301 DBREF 5F03 A 16 246 UNP P20231 TRYB2_HUMAN 31 275 DBREF 5F03 B 16 246 UNP P20231 TRYB2_HUMAN 31 275 SEQADV 5F03 LYS A 113 UNP P20231 ASN 132 CONFLICT SEQADV 5F03 LYS B 113 UNP P20231 ASN 132 CONFLICT SEQRES 1 A 245 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 A 245 TRP GLN VAL SER LEU ARG VAL HIS GLY PRO TYR TRP MET SEQRES 3 A 245 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 A 245 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 A 245 LEU ALA ALA LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 A 245 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 A 245 VAL HIS PRO GLN PHE TYR THR ALA GLN ILE GLY ALA ASP SEQRES 8 A 245 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL LYS VAL SER SEQRES 9 A 245 SER HIS VAL HIS THR VAL THR LEU PRO PRO ALA SER GLU SEQRES 10 A 245 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 A 245 GLY ASP VAL ASP ASN ASP GLU ARG LEU PRO PRO PRO PHE SEQRES 12 A 245 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 A 245 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 A 245 ASP ASP VAL ARG ILE VAL ARG ASP ASP MET LEU CYS ALA SEQRES 15 A 245 GLY ASN THR ARG ARG ASP SER CYS GLN GLY ASP SER GLY SEQRES 16 A 245 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 A 245 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 A 245 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 A 245 ASP TRP ILE HIS HIS TYR VAL PRO LYS LYS PRO SEQRES 1 B 245 ILE VAL GLY GLY GLN GLU ALA PRO ARG SER LYS TRP PRO SEQRES 2 B 245 TRP GLN VAL SER LEU ARG VAL HIS GLY PRO TYR TRP MET SEQRES 3 B 245 HIS PHE CYS GLY GLY SER LEU ILE HIS PRO GLN TRP VAL SEQRES 4 B 245 LEU THR ALA ALA HIS CYS VAL GLY PRO ASP VAL LYS ASP SEQRES 5 B 245 LEU ALA ALA LEU ARG VAL GLN LEU ARG GLU GLN HIS LEU SEQRES 6 B 245 TYR TYR GLN ASP GLN LEU LEU PRO VAL SER ARG ILE ILE SEQRES 7 B 245 VAL HIS PRO GLN PHE TYR THR ALA GLN ILE GLY ALA ASP SEQRES 8 B 245 ILE ALA LEU LEU GLU LEU GLU GLU PRO VAL LYS VAL SER SEQRES 9 B 245 SER HIS VAL HIS THR VAL THR LEU PRO PRO ALA SER GLU SEQRES 10 B 245 THR PHE PRO PRO GLY MET PRO CYS TRP VAL THR GLY TRP SEQRES 11 B 245 GLY ASP VAL ASP ASN ASP GLU ARG LEU PRO PRO PRO PHE SEQRES 12 B 245 PRO LEU LYS GLN VAL LYS VAL PRO ILE MET GLU ASN HIS SEQRES 13 B 245 ILE CYS ASP ALA LYS TYR HIS LEU GLY ALA TYR THR GLY SEQRES 14 B 245 ASP ASP VAL ARG ILE VAL ARG ASP ASP MET LEU CYS ALA SEQRES 15 B 245 GLY ASN THR ARG ARG ASP SER CYS GLN GLY ASP SER GLY SEQRES 16 B 245 GLY PRO LEU VAL CYS LYS VAL ASN GLY THR TRP LEU GLN SEQRES 17 B 245 ALA GLY VAL VAL SER TRP GLY GLU GLY CYS ALA GLN PRO SEQRES 18 B 245 ASN ARG PRO GLY ILE TYR THR ARG VAL THR TYR TYR LEU SEQRES 19 B 245 ASP TRP ILE HIS HIS TYR VAL PRO LYS LYS PRO HET 5TA A 301 31 HET 5TA B 301 31 HETNAM 5TA (5~{S})-5-[[3-(AMINOMETHYL)PHENOXY]METHYL]-3-[3-[2-(2- HETNAM 2 5TA CHLORANYLPYRIDIN-3-YL)ETHYNYL]PHENYL]-1,3-OXAZOLIDIN- HETNAM 3 5TA 2-ONE FORMUL 3 5TA 2(C24 H20 CL N3 O3) FORMUL 5 HOH *689(H2 O) HELIX 1 AA1 ALA A 55 VAL A 59 5 5 HELIX 2 AA2 ASP A 60E ALA A 62 5 3 HELIX 3 AA3 GLU A 164 LEU A 173A 1 11 HELIX 4 AA4 TYR A 234 VAL A 242 1 9 HELIX 5 AA5 ALA B 55 GLY B 60 1 6 HELIX 6 AA6 ASP B 60E ALA B 62 5 3 HELIX 7 AA7 GLU B 164 LEU B 173A 1 11 HELIX 8 AA8 TYR B 234 VAL B 242 1 9 SHEET 1 AA1 8 GLN A 20 GLU A 21 0 SHEET 2 AA1 8 LYS A 156 VAL A 160 -1 O GLN A 157 N GLN A 20 SHEET 3 AA1 8 CYS A 136 GLY A 140 -1 N CYS A 136 O VAL A 160 SHEET 4 AA1 8 PRO A 198 VAL A 203 -1 O VAL A 200 N TRP A 137 SHEET 5 AA1 8 THR A 206 TRP A 215 -1 O THR A 206 N VAL A 203 SHEET 6 AA1 8 GLY A 226 ARG A 230 -1 O ILE A 227 N TRP A 215 SHEET 7 AA1 8 MET A 180 ALA A 183 -1 N LEU A 181 O TYR A 228 SHEET 8 AA1 8 ILE A 162 MET A 163 -1 N MET A 163 O CYS A 182 SHEET 1 AA2 6 LEU A 64 GLN A 67 0 SHEET 2 AA2 6 GLN A 30 VAL A 35 -1 N SER A 32 O GLN A 67 SHEET 3 AA2 6 MET A 39 HIS A 48 -1 O CYS A 42 N LEU A 33 SHEET 4 AA2 6 TRP A 51 THR A 54 -1 O LEU A 53 N SER A 45 SHEET 5 AA2 6 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 6 AA2 6 VAL A 85 VAL A 90 -1 N ILE A 89 O LEU A 105 SHEET 1 AA3 8 GLN B 20 GLU B 21 0 SHEET 2 AA3 8 LYS B 156 MET B 163 -1 O GLN B 157 N GLN B 20 SHEET 3 AA3 8 MET B 180 ALA B 183 -1 O CYS B 182 N MET B 163 SHEET 4 AA3 8 GLY B 226 ARG B 230 -1 O TYR B 228 N LEU B 181 SHEET 5 AA3 8 THR B 206 TRP B 215 -1 N TRP B 215 O ILE B 227 SHEET 6 AA3 8 PRO B 198 VAL B 203 -1 N VAL B 203 O THR B 206 SHEET 7 AA3 8 PRO B 135 GLY B 140 -1 N TRP B 137 O VAL B 200 SHEET 8 AA3 8 LYS B 156 MET B 163 -1 O VAL B 160 N CYS B 136 SHEET 1 AA4 6 LEU B 64 GLN B 67 0 SHEET 2 AA4 6 GLN B 30 VAL B 35 -1 N SER B 32 O GLN B 67 SHEET 3 AA4 6 MET B 39 HIS B 48 -1 O CYS B 42 N LEU B 33 SHEET 4 AA4 6 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 5 AA4 6 ALA B 104 LEU B 108 -1 O LEU B 106 N VAL B 52 SHEET 6 AA4 6 VAL B 85 VAL B 90 -1 N ILE B 89 O LEU B 105 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.05 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.02 SSBOND 4 CYS A 191 CYS A 220 1555 1555 2.05 SSBOND 5 CYS B 42 CYS B 58 1555 1555 2.05 SSBOND 6 CYS B 136 CYS B 201 1555 1555 2.05 SSBOND 7 CYS B 168 CYS B 182 1555 1555 2.00 SSBOND 8 CYS B 191 CYS B 220 1555 1555 2.03 CISPEP 1 GLY A 60 PRO A 60A 0 5.30 CISPEP 2 PRO A 152A PRO A 152B 0 1.39 CISPEP 3 GLY B 60 PRO B 60A 0 5.99 CISPEP 4 PRO B 152A PRO B 152B 0 4.81 SITE 1 AC1 17 GLN A 98 TYR A 172 ILE A 175 ASP A 189 SITE 2 AC1 17 SER A 190 CYS A 191 GLN A 192 SER A 195 SITE 3 AC1 17 VAL A 213 TRP A 215 GLY A 216 GLU A 217 SITE 4 AC1 17 GLY A 219 ARG A 224 HOH A 503 HOH A 554 SITE 5 AC1 17 ASP B 60B SITE 1 AC2 17 PRO A 60A ASP A 60B GLN B 98 TYR B 172 SITE 2 AC2 17 ILE B 175 ASP B 189 SER B 190 CYS B 191 SITE 3 AC2 17 GLN B 192 SER B 195 VAL B 213 TRP B 215 SITE 4 AC2 17 GLY B 216 GLU B 217 GLY B 219 ARG B 224 SITE 5 AC2 17 HOH B 540 CRYST1 78.340 78.340 165.950 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012765 0.007370 0.000000 0.00000 SCALE2 0.000000 0.014740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006026 0.00000