HEADER OXIDOREDUCTASE 29-NOV-15 5F12 TITLE WRBA IN COMPLEX WITH FMN UNDER CRYSTALLIZATION CONDITIONS OF WRBA-FMN- TITLE 2 BQ STRUCTURE (4YQE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)H DEHYDROGENASE (QUINONE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLAVOPROTEIN WRBA,NAD(P)H:QUINONE OXIDOREDUCTASE,NQO; COMPND 5 EC: 1.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: WRBA, B1004, JW0989; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVIN MONONUCLEOTIDE, NAD(P)H DEHYDROGENASE (QUINONE), OXIDATION- KEYWDS 2 REDUCTION, PROTEIN BINDING, REPRESSOR PROTEINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DEGTJARIK,J.BRYNDA,O.ETTRICHOVA,I.KUTA SMATANOVA,J.CAREY,R.ETTRICH REVDAT 5 10-JAN-24 5F12 1 REMARK REVDAT 4 22-JUN-16 5F12 1 JRNL REVDAT 3 08-JUN-16 5F12 1 JRNL REVDAT 2 01-JUN-16 5F12 1 JRNL REVDAT 1 25-MAY-16 5F12 0 JRNL AUTH O.DEGTJARIK,J.BRYNDA,O.ETTRICHOVA,M.KUTY,D.SINHA, JRNL AUTH 2 I.KUTA SMATANOVA,J.CAREY,R.ETTRICH,D.REHA JRNL TITL QUANTUM CALCULATIONS INDICATE EFFECTIVE ELECTRON TRANSFER JRNL TITL 2 BETWEEN FMN AND BENZOQUINONE IN A NEW CRYSTAL STRUCTURE OF JRNL TITL 3 ESCHERICHIA COLI WRBA. JRNL REF J.PHYS.CHEM.B V. 120 4867 2016 JRNL REFN ISSN 1089-5647 JRNL PMID 27183467 JRNL DOI 10.1021/ACS.JPCB.5B11958 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2980 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2761 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4073 ; 2.004 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6374 ; 1.388 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.081 ;24.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;11.774 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.370 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3420 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 652 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 197 B 1 197 10243 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5F12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3B6I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/IMIDAZOL, 12.5 % PEG 1000, REMARK 280 12.5% PEG 3350, 12.5% MPD, 0.2M 1,6-HEXANEDIOL, 0.2 M 1-BUTANOL, REMARK 280 0.2 M (RS)-1,2-PROPANEDIOL, 0.2 M 2-PROPANOL, 0.2 M 1,4- REMARK 280 BUTANEDIOL, 0.2 M 1,3-PROPANEDIOL, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.51000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.25500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.76500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.25500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 126.76500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.51000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 153 REMARK 465 ARG A 154 REMARK 465 GLY A 155 REMARK 465 GLN B 145 REMARK 465 GLU B 146 REMARK 465 LEU B 147 REMARK 465 PHE B 148 REMARK 465 ASP B 149 REMARK 465 VAL B 150 REMARK 465 SER B 151 REMARK 465 GLN B 152 REMARK 465 VAL B 153 REMARK 465 ARG B 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 168 138.88 83.49 REMARK 500 ARG B 171 -148.59 29.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 169 SER B 170 -143.76 REMARK 500 ARG B 171 GLN B 172 -129.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 405 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YQE RELATED DB: PDB REMARK 900 COMPLEX WITH FMN AND BQ REMARK 900 RELATED ID: 1RG1 RELATED DB: PDB REMARK 900 WRBA APOPROTEIN REMARK 900 RELATED ID: 3ZHO RELATED DB: PDB REMARK 900 WRBA IN COMPLEX WITH FMN AT 1.2 A RESOLUTION DBREF 5F12 A 1 197 UNP P0A8G6 NQOR_ECOLI 2 198 DBREF 5F12 B 1 197 UNP P0A8G6 NQOR_ECOLI 2 198 SEQRES 1 A 197 ALA LYS VAL LEU VAL LEU TYR TYR SER MHO TYR GLY HIS SEQRES 2 A 197 ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SER SEQRES 3 A 197 LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL PRO SEQRES 4 A 197 GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY GLY SEQRES 5 A 197 LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU LEU SEQRES 6 A 197 ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR ARG SEQRES 7 A 197 PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU ASP SEQRES 8 A 197 GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR GLY SEQRES 9 A 197 LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY GLY SEQRES 10 A 197 GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR LEU SEQRES 11 A 197 ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR ALA SEQRES 12 A 197 ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY GLY SEQRES 13 A 197 THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP GLY SEQRES 14 A 197 SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA ARG SEQRES 15 A 197 TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS LEU SEQRES 16 A 197 ASN GLY SEQRES 1 B 197 ALA LYS VAL LEU VAL LEU TYR TYR SER MHO TYR GLY HIS SEQRES 2 B 197 ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SER SEQRES 3 B 197 LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL PRO SEQRES 4 B 197 GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY GLY SEQRES 5 B 197 LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU LEU SEQRES 6 B 197 ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR ARG SEQRES 7 B 197 PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU ASP SEQRES 8 B 197 GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR GLY SEQRES 9 B 197 LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY GLY SEQRES 10 B 197 GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR LEU SEQRES 11 B 197 ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR ALA SEQRES 12 B 197 ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY GLY SEQRES 13 B 197 THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP GLY SEQRES 14 B 197 SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA ARG SEQRES 15 B 197 TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS LEU SEQRES 16 B 197 ASN GLY MODRES 5F12 MHO A 10 MET MODIFIED RESIDUE MODRES 5F12 MHO B 10 MET MODIFIED RESIDUE HET MHO A 10 9 HET MHO B 10 9 HET FMN A 201 31 HET FMN B 201 31 HETNAM MHO S-OXYMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MHO 2(C5 H11 N O3 S) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *206(H2 O) HELIX 1 AA1 GLY A 12 SER A 26 1 15 HELIX 2 AA2 PRO A 43 ALA A 50 1 8 HELIX 3 AA3 THR A 61 TYR A 68 5 8 HELIX 4 AA4 SER A 83 ASP A 91 1 9 HELIX 5 AA5 THR A 93 GLY A 100 1 8 HELIX 6 AA6 GLY A 118 HIS A 133 1 16 HELIX 7 AA7 ALA A 144 PHE A 148 5 5 HELIX 8 AA8 SER A 174 GLY A 197 1 24 HELIX 9 AA9 GLY B 12 LYS B 27 1 16 HELIX 10 AB1 PRO B 43 ALA B 50 1 8 HELIX 11 AB2 THR B 61 TYR B 68 5 8 HELIX 12 AB3 SER B 83 ASP B 91 1 9 HELIX 13 AB4 THR B 93 GLY B 100 1 8 HELIX 14 AB5 GLY B 118 HIS B 133 1 16 HELIX 15 AB6 ILE B 140 ALA B 144 5 5 HELIX 16 AB7 SER B 174 GLY B 197 1 24 SHEET 1 AA1 5 GLU A 32 ARG A 37 0 SHEET 2 AA1 5 LYS A 2 TYR A 7 1 N VAL A 5 O VAL A 34 SHEET 3 AA1 5 ALA A 70 PRO A 76 1 O ILE A 72 N LEU A 4 SHEET 4 AA1 5 LEU A 106 SER A 112 1 O SER A 108 N PHE A 73 SHEET 5 AA1 5 VAL A 136 ILE A 137 1 O VAL A 136 N ALA A 107 SHEET 1 AA2 5 GLU B 32 ARG B 37 0 SHEET 2 AA2 5 LYS B 2 TYR B 7 1 N VAL B 3 O GLU B 32 SHEET 3 AA2 5 ALA B 70 PRO B 76 1 O ILE B 72 N LEU B 4 SHEET 4 AA2 5 LEU B 106 THR B 113 1 O SER B 108 N PHE B 73 SHEET 5 AA2 5 VAL B 136 ILE B 137 1 O VAL B 136 N ALA B 107 SHEET 1 AA3 5 GLU B 32 ARG B 37 0 SHEET 2 AA3 5 LYS B 2 TYR B 7 1 N VAL B 3 O GLU B 32 SHEET 3 AA3 5 ALA B 70 PRO B 76 1 O ILE B 72 N LEU B 4 SHEET 4 AA3 5 LEU B 106 THR B 113 1 O SER B 108 N PHE B 73 SHEET 5 AA3 5 THR B 162 ILE B 164 1 O THR B 163 N THR B 113 LINK C SER A 9 N MHO A 10 1555 1555 1.31 LINK C MHO A 10 N TYR A 11 1555 1555 1.33 LINK C SER B 9 N MHO B 10 1555 1555 1.33 LINK C MHO B 10 N TYR B 11 1555 1555 1.33 SITE 1 AC1 20 SER A 9 MHO A 10 TYR A 11 GLY A 12 SITE 2 AC1 20 HIS A 13 ILE A 14 PRO A 76 THR A 77 SITE 3 AC1 20 ARG A 78 PHE A 79 SER A 112 THR A 113 SITE 4 AC1 20 GLY A 114 THR A 115 GLY A 116 GLY A 117 SITE 5 AC1 20 HOH A 305 HOH A 337 ASP B 91 HIS B 132 SITE 1 AC2 22 ASP A 91 HIS A 132 SER B 9 MHO B 10 SITE 2 AC2 22 TYR B 11 GLY B 12 HIS B 13 ILE B 14 SITE 3 AC2 22 PRO B 76 THR B 77 ARG B 78 PHE B 79 SITE 4 AC2 22 SER B 112 THR B 113 GLY B 114 THR B 115 SITE 5 AC2 22 GLY B 116 GLY B 117 ALA B 165 HOH B 306 SITE 6 AC2 22 HOH B 326 HOH B 333 CRYST1 60.750 60.750 169.020 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005916 0.00000