HEADER HYDROLASE 30-NOV-15 5F1F TITLE CRYSTAL STRUCTURE OF CMY-10 ADENYLYLATED BY ACETYL-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER AEROGENES; SOURCE 3 ORGANISM_TAXID: 548; SOURCE 4 GENE: BLACMY-10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS C BETA LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.AN,M.K.KIM,J.H.NA,S.S.CHA REVDAT 4 23-OCT-24 5F1F 1 REMARK REVDAT 3 08-NOV-23 5F1F 1 REMARK REVDAT 2 31-MAR-21 5F1F 1 TITLE JRNL LINK REVDAT 1 07-DEC-16 5F1F 0 JRNL AUTH M.K.KIM,Y.J.AN,J.H.NA,J.H.SEOL,J.Y.RYU,J.W.LEE,L.W.KANG, JRNL AUTH 2 K.M.CHUNG,J.H.LEE,J.H.MOON,J.S.LEE,S.S.CHA JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO THE INHIBITION OF JRNL TITL 2 CLASS C BETA-LACTAMASES THROUGH THE ADENYLYLATION OF THE JRNL TITL 3 NUCLEOPHILIC SERINE. JRNL REF J.ANTIMICROB.CHEMOTHER. V. 72 735 2017 JRNL REFN ESSN 1460-2091 JRNL PMID 27999057 JRNL DOI 10.1093/JAC/DKW491 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.540 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 44969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1919 - 3.9791 0.94 2773 137 0.1780 0.2055 REMARK 3 2 3.9791 - 3.1588 0.98 2781 137 0.1645 0.1732 REMARK 3 3 3.1588 - 2.7596 0.99 2743 157 0.1804 0.2275 REMARK 3 4 2.7596 - 2.5074 0.99 2748 140 0.1690 0.1902 REMARK 3 5 2.5074 - 2.3277 0.99 2738 146 0.1643 0.1888 REMARK 3 6 2.3277 - 2.1905 0.99 2685 147 0.1564 0.1593 REMARK 3 7 2.1905 - 2.0808 0.98 2682 151 0.1552 0.2048 REMARK 3 8 2.0808 - 1.9902 0.98 2701 127 0.1604 0.2012 REMARK 3 9 1.9902 - 1.9136 0.98 2674 138 0.1639 0.2128 REMARK 3 10 1.9136 - 1.8476 0.97 2642 134 0.1638 0.2082 REMARK 3 11 1.8476 - 1.7898 0.97 2636 135 0.1625 0.2056 REMARK 3 12 1.7898 - 1.7386 0.96 2617 147 0.1590 0.1801 REMARK 3 13 1.7386 - 1.6929 0.95 2566 151 0.1583 0.2125 REMARK 3 14 1.6929 - 1.6516 0.94 2533 139 0.1549 0.1935 REMARK 3 15 1.6516 - 1.6140 0.93 2520 149 0.1494 0.1976 REMARK 3 16 1.6140 - 1.5797 0.92 2500 143 0.1575 0.2075 REMARK 3 17 1.5797 - 1.5481 0.90 2431 127 0.1669 0.2124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2832 REMARK 3 ANGLE : 1.453 3802 REMARK 3 CHIRALITY : 0.060 416 REMARK 3 PLANARITY : 0.008 494 REMARK 3 DIHEDRAL : 12.675 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 62.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1ZKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CADMIUM CHLORIDE, NA-CACODYLATE, PEG REMARK 280 400, PH 6.5, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.93700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.92050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.67100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.92050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.93700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.67100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 SER A 306 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 10 O HOH A 501 2.10 REMARK 500 O HOH A 675 O HOH A 749 2.10 REMARK 500 O HOH A 581 O HOH A 595 2.12 REMARK 500 O HOH A 590 O HOH A 784 2.15 REMARK 500 OE1 GLU A 344 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 161 CG HIS A 161 CD2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 185 78.15 -102.50 REMARK 500 TYR A 223 27.68 -163.54 REMARK 500 SER A 306 -168.08 67.86 REMARK 500 ASN A 338 43.62 -100.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 406 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 ND1 REMARK 620 2 GLU A 50 OE1 52.1 REMARK 620 3 GLU A 50 OE2 53.0 3.7 REMARK 620 4 HIS A 148 NE2 82.7 56.2 59.3 REMARK 620 5 HOH A 568 O 73.6 39.8 42.8 16.5 REMARK 620 6 HOH A 708 O 109.9 130.9 127.4 167.3 165.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 405 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD2 REMARK 620 2 GLU A 294 OE1 51.7 REMARK 620 3 GLU A 294 OE2 53.7 2.6 REMARK 620 4 HOH A 508 O 112.0 60.3 58.3 REMARK 620 5 HOH A 721 O 81.4 132.7 134.4 164.5 REMARK 620 6 HOH A 755 O 118.2 103.9 101.5 74.7 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 403 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 24 ND1 REMARK 620 2 GLY A 359 O 17.1 REMARK 620 3 HOH A 762 O 96.1 90.4 REMARK 620 4 HOH A 767 O 115.3 132.3 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 161 NE2 REMARK 620 2 HOH A 540 O 70.7 REMARK 620 3 HOH A 727 O 82.1 80.6 REMARK 620 4 HOH A 731 O 150.4 81.5 83.2 REMARK 620 5 HOH A 750 O 112.0 166.5 86.7 92.6 REMARK 620 6 HOH A 754 O 100.6 92.2 171.0 90.4 100.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 207 OE2 REMARK 620 2 VAL A 278 O 106.3 REMARK 620 3 HIS A 351 NE2 101.8 4.9 REMARK 620 4 HOH A 752 O 101.9 4.8 3.7 REMARK 620 5 HOH A 758 O 100.1 7.3 2.5 5.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 404 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 244 OD2 REMARK 620 2 HIS A 259 ND1 34.3 REMARK 620 3 HOH A 566 O 31.4 4.8 REMARK 620 4 HOH A 715 O 35.0 0.7 5.2 REMARK 620 5 HOH A 748 O 29.5 5.8 2.0 6.3 REMARK 620 6 HOH A 763 O 30.0 4.5 5.3 5.2 4.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F1G RELATED DB: PDB DBREF 5F1F A 1 359 UNP Q99QC1 Q99QC1_ENTAE 24 382 SEQADV 5F1F MET A -6 UNP Q99QC1 EXPRESSION TAG SEQADV 5F1F HIS A -5 UNP Q99QC1 EXPRESSION TAG SEQADV 5F1F HIS A -4 UNP Q99QC1 EXPRESSION TAG SEQADV 5F1F HIS A -3 UNP Q99QC1 EXPRESSION TAG SEQADV 5F1F HIS A -2 UNP Q99QC1 EXPRESSION TAG SEQADV 5F1F HIS A -1 UNP Q99QC1 EXPRESSION TAG SEQADV 5F1F HIS A 0 UNP Q99QC1 EXPRESSION TAG SEQRES 1 A 366 MET HIS HIS HIS HIS HIS HIS GLY GLU ALA SER PRO VAL SEQRES 2 A 366 ASP PRO LEU ARG PRO VAL VAL ASP ALA SER ILE GLN PRO SEQRES 3 A 366 LEU LEU LYS GLU HIS ARG ILE PRO GLY MET ALA VAL ALA SEQRES 4 A 366 VAL LEU LYS ASP GLY LYS ALA HIS TYR PHE ASN TYR GLY SEQRES 5 A 366 VAL ALA ASN ARG GLU SER GLY ALA GLY VAL SER GLU GLN SEQRES 6 A 366 THR LEU PHE GLU ILE GLY SER VAL SER LYS THR LEU THR SEQRES 7 A 366 ALA THR LEU GLY ALA TYR ALA VAL VAL LYS GLY ALA MET SEQRES 8 A 366 GLN LEU ASP ASP LYS ALA SER ARG HIS ALA PRO TRP LEU SEQRES 9 A 366 LYS GLY SER ALA PHE ASP SER ILE THR MET GLY GLU LEU SEQRES 10 A 366 ALA THR TYR SER ALA GLY GLY LEU PRO LEU GLN PHE PRO SEQRES 11 A 366 GLU GLU VAL ASP SER SER GLU LYS MET ARG ALA TYR TYR SEQRES 12 A 366 ARG GLN TRP ALA PRO VAL TYR SER PRO GLY SER HIS ARG SEQRES 13 A 366 GLN TYR SER ASN PRO SER ILE GLY LEU PHE GLY HIS LEU SEQRES 14 A 366 ALA ALA SER SER LEU LYS GLN PRO PHE ALA PRO LEU MET SEQRES 15 A 366 GLU GLN THR LEU LEU PRO GLY LEU GLY MET HIS HIS THR SEQRES 16 A 366 TYR VAL ASN VAL PRO LYS GLN ALA MET ALA SER TYR ALA SEQRES 17 A 366 TYR GLY TYR SER LYS GLU ASP LYS PRO ILE ARG VAL ASN SEQRES 18 A 366 PRO GLY MET LEU ALA ASP GLU ALA TYR GLY ILE LYS THR SEQRES 19 A 366 SER SER ALA ASP LEU LEU ARG PHE VAL LYS ALA ASN ILE SEQRES 20 A 366 GLY GLY VAL ASP ASP LYS ALA LEU GLN GLN ALA ILE SER SEQRES 21 A 366 LEU THR HIS GLN GLY HIS TYR SER VAL GLY GLY MET THR SEQRES 22 A 366 GLN GLY LEU GLY TRP GLU SER TYR ALA TYR PRO VAL THR SEQRES 23 A 366 GLU GLN THR LEU LEU ALA GLY ASN SER ALA LYS VAL ILE SEQRES 24 A 366 LEU GLU ALA ASN PRO THR ALA ALA PRO ARG GLU SER GLY SEQRES 25 A 366 SER GLN VAL LEU PHE ASN LYS THR GLY SER THR ASN GLY SEQRES 26 A 366 PHE GLY ALA TYR VAL ALA PHE VAL PRO ALA ARG GLY ILE SEQRES 27 A 366 GLY ILE VAL MET LEU ALA ASN ARG ASN TYR PRO ILE GLU SEQRES 28 A 366 ALA ARG ILE LYS ALA ALA HIS ALA ILE LEU ALA GLN LEU SEQRES 29 A 366 ALA GLY HET CD A 401 1 HET CD A 402 1 HET CD A 403 1 HET CD A 404 1 HET CD A 405 1 HET CD A 406 1 HET AMP A 407 22 HETNAM CD CADMIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 CD 6(CD 2+) FORMUL 8 AMP C10 H14 N5 O7 P FORMUL 9 HOH *321(H2 O) HELIX 1 AA1 LEU A 9 HIS A 24 1 16 HELIX 2 AA2 VAL A 66 LYS A 81 1 16 HELIX 3 AA3 LYS A 89 LYS A 98 5 10 HELIX 4 AA4 SER A 100 ILE A 105 5 6 HELIX 5 AA5 THR A 106 THR A 112 1 7 HELIX 6 AA6 SER A 128 TRP A 139 1 12 HELIX 7 AA7 SER A 152 LEU A 167 1 16 HELIX 8 AA8 PRO A 170 THR A 178 1 9 HELIX 9 AA9 THR A 178 LEU A 183 1 6 HELIX 10 AB1 PRO A 193 TYR A 200 5 8 HELIX 11 AB2 LEU A 218 GLY A 224 1 7 HELIX 12 AB3 SER A 228 GLY A 242 1 15 HELIX 13 AB4 ASP A 245 GLN A 257 1 13 HELIX 14 AB5 THR A 279 ASN A 287 1 9 HELIX 15 AB6 SER A 288 GLU A 294 1 7 HELIX 16 AB7 PRO A 327 GLY A 330 5 4 HELIX 17 AB8 PRO A 342 GLY A 359 1 18 SHEET 1 AA1 9 ALA A 53 GLY A 54 0 SHEET 2 AA1 9 LYS A 38 ASN A 48 -1 N ALA A 47 O ALA A 53 SHEET 3 AA1 9 GLY A 28 LYS A 35 -1 N VAL A 31 O PHE A 42 SHEET 4 AA1 9 ILE A 331 ALA A 337 -1 O LEU A 336 N ALA A 30 SHEET 5 AA1 9 PHE A 319 VAL A 326 -1 N VAL A 326 O ILE A 331 SHEET 6 AA1 9 VAL A 308 THR A 316 -1 N GLY A 314 O ALA A 321 SHEET 7 AA1 9 GLU A 272 ALA A 275 -1 N TYR A 274 O LEU A 309 SHEET 8 AA1 9 MET A 265 GLN A 267 -1 N THR A 266 O SER A 273 SHEET 9 AA1 9 TYR A 260 VAL A 262 -1 N TYR A 260 O GLN A 267 SHEET 1 AA2 2 PHE A 61 GLU A 62 0 SHEET 2 AA2 2 LYS A 226 THR A 227 -1 O THR A 227 N PHE A 61 SHEET 1 AA3 2 HIS A 148 ARG A 149 0 SHEET 2 AA3 2 ASN A 296 PRO A 297 -1 O ASN A 296 N ARG A 149 SHEET 1 AA4 2 GLY A 203 TYR A 204 0 SHEET 2 AA4 2 PRO A 210 ILE A 211 -1 O ILE A 211 N GLY A 203 LINK OG SER A 65 P AMP A 407 1555 1555 1.59 LINK ND1 HIS A 0 CD CD A 406 1555 1555 2.29 LINK OD2 ASP A 14 CD CD A 405 1555 1555 2.27 LINK ND1 HIS A 24 CD CD A 403 1555 1555 2.29 LINK OE1 GLU A 50 CD CD A 406 1555 3444 2.32 LINK OE2 GLU A 50 CD CD A 406 1555 3444 2.31 LINK NE2 HIS A 148 CD CD A 406 1555 3544 2.24 LINK NE2 HIS A 161 CD CD A 401 1555 1555 2.26 LINK OE2 GLU A 207 CD CD A 402 1555 3544 2.31 LINK OD2 ASP A 244 CD CD A 404 1555 4455 2.31 LINK ND1 HIS A 259 CD CD A 404 1555 1555 2.29 LINK O VAL A 278 CD CD A 402 1555 1555 2.36 LINK OE1 GLU A 294 CD CD A 405 1555 3544 2.30 LINK OE2 GLU A 294 CD CD A 405 1555 3544 2.29 LINK NE2 HIS A 351 CD CD A 402 1555 1555 2.31 LINK O GLY A 359 CD CD A 403 1555 3554 2.32 LINK CD CD A 401 O HOH A 540 1555 1555 2.33 LINK CD CD A 401 O HOH A 727 1555 1555 2.31 LINK CD CD A 401 O HOH A 731 1555 1555 2.29 LINK CD CD A 401 O HOH A 750 1555 1555 2.43 LINK CD CD A 401 O HOH A 754 1555 1555 2.38 LINK CD CD A 402 O HOH A 752 1555 1555 2.37 LINK CD CD A 402 O HOH A 758 1555 1555 2.34 LINK CD CD A 403 O HOH A 762 1555 1555 2.38 LINK CD CD A 403 O HOH A 767 1555 3544 2.29 LINK CD CD A 404 O HOH A 566 1555 4555 2.31 LINK CD CD A 404 O HOH A 715 1555 4555 2.35 LINK CD CD A 404 O HOH A 748 1555 1555 2.34 LINK CD CD A 404 O HOH A 763 1555 1555 2.37 LINK CD CD A 405 O HOH A 508 1555 1555 2.31 LINK CD CD A 405 O HOH A 721 1555 1555 2.32 LINK CD CD A 405 O HOH A 755 1555 1555 2.32 LINK CD CD A 406 O HOH A 568 1555 1555 2.23 LINK CD CD A 406 O HOH A 708 1555 3454 2.38 CISPEP 1 TYR A 276 PRO A 277 0 -5.83 SITE 1 AC1 6 HIS A 161 HOH A 540 HOH A 727 HOH A 731 SITE 2 AC1 6 HOH A 750 HOH A 754 SITE 1 AC2 5 GLU A 207 VAL A 278 HIS A 351 HOH A 752 SITE 2 AC2 5 HOH A 758 SITE 1 AC3 4 HIS A 24 GLY A 359 HOH A 762 HOH A 767 SITE 1 AC4 6 ASP A 244 HIS A 259 HOH A 566 HOH A 715 SITE 2 AC4 6 HOH A 748 HOH A 763 SITE 1 AC5 5 ASP A 14 GLU A 294 HOH A 508 HOH A 721 SITE 2 AC5 5 HOH A 755 SITE 1 AC6 5 HIS A 0 GLU A 50 HIS A 148 HOH A 568 SITE 2 AC6 5 HOH A 708 SITE 1 AC7 12 SER A 65 GLN A 121 TYR A 151 ASN A 153 SITE 2 AC7 12 TYR A 223 GLY A 314 SER A 315 THR A 316 SITE 3 AC7 12 HOH A 525 HOH A 581 HOH A 609 HOH A 682 CRYST1 49.874 59.342 111.841 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008941 0.00000