HEADER IMMUNE SYSTEM 30-NOV-15 5F1N TITLE MHC COMPLEXED TO 11MER PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DLA-88*50801; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PEPTIDE FROM CYTOCHROME P450 FAMILY 1 SUBFAMILY B COMPND 12 POLYPEPTIDE 1; COMPND 13 CHAIN: C, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 GENE: DLA-88; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 11 ORGANISM_COMMON: DOG; SOURCE 12 ORGANISM_TAXID: 9615; SOURCE 13 GENE: B2M; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 20 ORGANISM_COMMON: DOG; SOURCE 21 ORGANISM_TAXID: 9615 KEYWDS MHC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,Y.CHAI,J.QI,G.F.GAO REVDAT 3 15-NOV-17 5F1N 1 SOURCE REVDAT 2 21-DEC-16 5F1N 1 TITLE REVDAT 1 30-NOV-16 5F1N 0 JRNL AUTH J.XIAO,W.XIANG,Y.CHAI,J.HAYWOOD,J.QI,L.BA,P.QI,M.WANG,J.LIU, JRNL AUTH 2 G.F.GAO JRNL TITL DIVERSIFIED ANCHORING FEATURES THE PEPTIDE PRESENTATION OF JRNL TITL 2 DLA-88*50801: FIRST STRUCTURAL INSIGHT INTO DOMESTIC DOG MHC JRNL TITL 3 CLASS I JRNL REF J IMMUNOL. V. 197 2306 2016 JRNL REFN ESSN 1550-6606 JRNL PMID 27511732 JRNL DOI 10.4049/JIMMUNOL.1600887 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 64761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4578 - 5.6728 0.99 2736 145 0.1598 0.1861 REMARK 3 2 5.6728 - 4.5069 0.99 2694 129 0.1474 0.1754 REMARK 3 3 4.5069 - 3.9385 1.00 2745 145 0.1487 0.1581 REMARK 3 4 3.9385 - 3.5789 0.99 2671 130 0.1684 0.2141 REMARK 3 5 3.5789 - 3.3227 0.99 2713 147 0.1835 0.2005 REMARK 3 6 3.3227 - 3.1270 0.99 2656 156 0.1797 0.2435 REMARK 3 7 3.1270 - 2.9705 1.00 2686 154 0.1853 0.2331 REMARK 3 8 2.9705 - 2.8413 1.00 2699 149 0.1930 0.2226 REMARK 3 9 2.8413 - 2.7320 1.00 2655 148 0.2075 0.2329 REMARK 3 10 2.7320 - 2.6377 1.00 2745 139 0.2024 0.2303 REMARK 3 11 2.6377 - 2.5553 1.00 2696 138 0.2013 0.2419 REMARK 3 12 2.5553 - 2.4823 1.00 2685 127 0.1997 0.2511 REMARK 3 13 2.4823 - 2.4170 1.00 2714 151 0.2011 0.2436 REMARK 3 14 2.4170 - 2.3580 1.00 2652 149 0.1957 0.2765 REMARK 3 15 2.3580 - 2.3044 0.99 2665 144 0.2045 0.2542 REMARK 3 16 2.3044 - 2.2554 0.99 2707 134 0.2137 0.2530 REMARK 3 17 2.2554 - 2.2103 0.99 2674 136 0.2195 0.2718 REMARK 3 18 2.2103 - 2.1686 1.00 2681 167 0.2138 0.2579 REMARK 3 19 2.1686 - 2.1299 0.99 2703 129 0.2149 0.2567 REMARK 3 20 2.1299 - 2.0938 0.99 2673 150 0.2174 0.2629 REMARK 3 21 2.0938 - 2.0600 0.99 2659 128 0.2274 0.2845 REMARK 3 22 2.0600 - 2.0283 0.99 2672 155 0.2283 0.2766 REMARK 3 23 2.0283 - 1.9985 0.85 2302 128 0.2265 0.2758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6458 REMARK 3 ANGLE : 0.996 8772 REMARK 3 CHIRALITY : 0.045 904 REMARK 3 PLANARITY : 0.005 1162 REMARK 3 DIHEDRAL : 15.301 2372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 32.3400 -12.7605 140.8398 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.1578 REMARK 3 T33: 0.1269 T12: -0.0135 REMARK 3 T13: -0.0038 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1608 L22: 0.6147 REMARK 3 L33: 0.1814 L12: -0.0939 REMARK 3 L13: -0.0521 L23: 0.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0330 S13: -0.0049 REMARK 3 S21: -0.0196 S22: -0.0024 S23: -0.0048 REMARK 3 S31: -0.0262 S32: -0.0316 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : BIODIFF REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CNS REMARK 200 DATA SCALING SOFTWARE : CNS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9970 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 (PH 5.5), 25% PEG 3,350 (W/V), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 80.24600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 ARG B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 PHE B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 LEU B 17 REMARK 465 ILE B 18 REMARK 465 LEU B 19 REMARK 465 LEU B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 CYS B 23 REMARK 465 ARG B 24 REMARK 465 LEU B 25 REMARK 465 ASP B 26 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 PRO E 3 REMARK 465 ARG E 4 REMARK 465 PRO E 5 REMARK 465 ALA E 6 REMARK 465 LEU E 7 REMARK 465 ALA E 8 REMARK 465 THR E 9 REMARK 465 ALA E 10 REMARK 465 GLY E 11 REMARK 465 PHE E 12 REMARK 465 LEU E 13 REMARK 465 ALA E 14 REMARK 465 LEU E 15 REMARK 465 LEU E 16 REMARK 465 LEU E 17 REMARK 465 ILE E 18 REMARK 465 LEU E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 ALA E 22 REMARK 465 CYS E 23 REMARK 465 ARG E 24 REMARK 465 LEU E 25 REMARK 465 ASP E 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 27 N REMARK 470 ALA E 27 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 460 O HOH A 467 1.92 REMARK 500 O HOH D 340 O HOH D 483 1.97 REMARK 500 O HOH A 448 O HOH A 455 1.98 REMARK 500 OE1 GLU A 63 O HOH A 301 2.01 REMARK 500 OG SER A 11 O HOH A 302 2.02 REMARK 500 OD2 ASP A 39 O HOH A 303 2.03 REMARK 500 NH2 ARG A 111 O HOH A 304 2.05 REMARK 500 NH2 ARG A 182 OD1 ASP F 6 2.06 REMARK 500 O GLU B 115 O HOH B 201 2.08 REMARK 500 O HOH E 240 O HOH E 295 2.08 REMARK 500 O HOH D 412 O HOH D 490 2.11 REMARK 500 OG SER D 196 ND1 HIS D 198 2.13 REMARK 500 O HOH A 329 O HOH A 352 2.16 REMARK 500 OE1 GLN B 77 O HOH B 202 2.17 REMARK 500 O HOH B 240 O HOH B 264 2.17 REMARK 500 OD1 ASP D 39 O HOH D 301 2.18 REMARK 500 O HOH A 453 O HOH D 421 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 227 NE2 GLN D 254 2859 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG F 1 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 35.71 -160.69 REMARK 500 ASP A 29 -125.56 53.99 REMARK 500 PRO A 105 48.51 -95.41 REMARK 500 GLN A 156 -53.17 -131.93 REMARK 500 THR A 163 -72.47 -118.12 REMARK 500 SER A 196 -150.68 -168.92 REMARK 500 SER A 252 87.92 -62.34 REMARK 500 TRP B 86 -7.70 76.46 REMARK 500 ASP D 29 -125.15 51.93 REMARK 500 TYR D 123 -62.98 -121.97 REMARK 500 GLN D 156 -52.43 -125.03 REMARK 500 THR D 163 -77.43 -120.29 REMARK 500 SER D 196 -126.29 177.93 REMARK 500 ASP D 197 31.53 -149.94 REMARK 500 GLN D 225 65.35 -100.05 REMARK 500 ASP D 228 69.08 -110.15 REMARK 500 PRO D 270 138.27 -38.29 REMARK 500 TRP E 86 -4.08 75.02 REMARK 500 ASN E 99 130.47 -179.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F1I RELATED DB: PDB DBREF 5F1N A 1 275 UNP J9UGS3 J9UGS3_CANFA 2 276 DBREF 5F1N B 1 125 UNP E2RN10 E2RN10_CANFA 1 125 DBREF 5F1N C 1 11 UNP C1KG39 C1KG39_CANFA 444 454 DBREF 5F1N D 1 275 UNP J9UGS3 J9UGS3_CANFA 2 276 DBREF 5F1N E 1 125 UNP E2RN10 E2RN10_CANFA 1 125 DBREF 5F1N F 1 11 UNP C1KG39 C1KG39_CANFA 444 454 SEQRES 1 A 275 GLY SER HIS SER LEU ARG TYR PHE TYR THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY ASP PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA THR GLY ARG THR GLU PRO ARG ALA PRO TRP VAL SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS GLU THR ALA GLN VAL TYR ARG VAL ASP LEU SEQRES 7 A 275 ASP THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR ILE GLN THR MET TYR GLY CYS ASP LEU GLY SEQRES 9 A 275 PRO GLY GLY ARG LEU LEU ARG GLY TYR ARG GLN ASP ALA SEQRES 10 A 275 TYR ASP GLY ALA ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 275 ARG ARG LYS TRP GLU ALA ALA GLY VAL ALA GLU LEU GLN SEQRES 13 A 275 TRP ARG ASN TYR LEU GLU THR THR CYS VAL GLU TRP LEU SEQRES 14 A 275 GLN ARG TYR LEU GLU MET GLY LYS GLU THR LEU LEU ARG SEQRES 15 A 275 ALA GLU PRO PRO SER THR ARG VAL THR ARG HIS PRO ILE SEQRES 16 A 275 SER ASP HIS GLU VAL THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 275 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 275 GLY GLU ASP GLN THR GLN ASP THR GLU VAL VAL ASP THR SEQRES 19 A 275 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 275 VAL VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS SEQRES 21 A 275 HIS VAL GLN HIS GLU GLY LEU VAL GLU PRO VAL THR ARG SEQRES 22 A 275 ARG TRP SEQRES 1 B 125 MET ALA PRO ARG PRO ALA LEU ALA THR ALA GLY PHE LEU SEQRES 2 B 125 ALA LEU LEU LEU ILE LEU LEU ALA ALA CYS ARG LEU ASP SEQRES 3 B 125 ALA VAL GLN HIS PRO PRO LYS ILE GLN VAL TYR SER ARG SEQRES 4 B 125 HIS PRO ALA GLU ASN GLY LYS PRO ASN PHE LEU ASN CYS SEQRES 5 B 125 TYR VAL SER GLY PHE HIS PRO PRO GLU ILE GLU ILE ASP SEQRES 6 B 125 LEU LEU LYS ASN GLY LYS GLU MET LYS ALA GLU GLN THR SEQRES 7 B 125 ASP LEU SER PHE SER LYS ASP TRP THR PHE TYR LEU LEU SEQRES 8 B 125 VAL HIS THR GLU PHE THR PRO ASN GLU GLN ASP GLU PHE SEQRES 9 B 125 SER CYS ARG VAL LYS HIS VAL THR LEU SER GLU PRO GLN SEQRES 10 B 125 ILE VAL LYS TRP ASP ARG ASP ASN SEQRES 1 C 11 ARG PHE LEU ASP LYS ASP GLY PHE ILE ASP LYS SEQRES 1 D 275 GLY SER HIS SER LEU ARG TYR PHE TYR THR SER VAL SER SEQRES 2 D 275 ARG PRO GLY ARG GLY ASP PRO ARG PHE ILE ALA VAL GLY SEQRES 3 D 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 275 ALA ALA THR GLY ARG THR GLU PRO ARG ALA PRO TRP VAL SEQRES 5 D 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 D 275 LYS VAL LYS GLU THR ALA GLN VAL TYR ARG VAL ASP LEU SEQRES 7 D 275 ASP THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 275 SER HIS THR ILE GLN THR MET TYR GLY CYS ASP LEU GLY SEQRES 9 D 275 PRO GLY GLY ARG LEU LEU ARG GLY TYR ARG GLN ASP ALA SEQRES 10 D 275 TYR ASP GLY ALA ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 275 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 D 275 ARG ARG LYS TRP GLU ALA ALA GLY VAL ALA GLU LEU GLN SEQRES 13 D 275 TRP ARG ASN TYR LEU GLU THR THR CYS VAL GLU TRP LEU SEQRES 14 D 275 GLN ARG TYR LEU GLU MET GLY LYS GLU THR LEU LEU ARG SEQRES 15 D 275 ALA GLU PRO PRO SER THR ARG VAL THR ARG HIS PRO ILE SEQRES 16 D 275 SER ASP HIS GLU VAL THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 D 275 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 D 275 GLY GLU ASP GLN THR GLN ASP THR GLU VAL VAL ASP THR SEQRES 19 D 275 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 D 275 VAL VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS SEQRES 21 D 275 HIS VAL GLN HIS GLU GLY LEU VAL GLU PRO VAL THR ARG SEQRES 22 D 275 ARG TRP SEQRES 1 E 125 MET ALA PRO ARG PRO ALA LEU ALA THR ALA GLY PHE LEU SEQRES 2 E 125 ALA LEU LEU LEU ILE LEU LEU ALA ALA CYS ARG LEU ASP SEQRES 3 E 125 ALA VAL GLN HIS PRO PRO LYS ILE GLN VAL TYR SER ARG SEQRES 4 E 125 HIS PRO ALA GLU ASN GLY LYS PRO ASN PHE LEU ASN CYS SEQRES 5 E 125 TYR VAL SER GLY PHE HIS PRO PRO GLU ILE GLU ILE ASP SEQRES 6 E 125 LEU LEU LYS ASN GLY LYS GLU MET LYS ALA GLU GLN THR SEQRES 7 E 125 ASP LEU SER PHE SER LYS ASP TRP THR PHE TYR LEU LEU SEQRES 8 E 125 VAL HIS THR GLU PHE THR PRO ASN GLU GLN ASP GLU PHE SEQRES 9 E 125 SER CYS ARG VAL LYS HIS VAL THR LEU SER GLU PRO GLN SEQRES 10 E 125 ILE VAL LYS TRP ASP ARG ASP ASN SEQRES 1 F 11 ARG PHE LEU ASP LYS ASP GLY PHE ILE ASP LYS FORMUL 7 HOH *583(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 GLY A 151 GLN A 156 1 6 HELIX 5 AA5 GLN A 156 THR A 163 1 8 HELIX 6 AA6 THR A 163 GLY A 176 1 14 HELIX 7 AA7 GLY A 176 LEU A 181 1 6 HELIX 8 AA8 GLN A 254 GLN A 256 5 3 HELIX 9 AA9 ASP C 4 PHE C 8 5 5 HELIX 10 AB1 ALA D 49 GLU D 53 5 5 HELIX 11 AB2 GLY D 56 TYR D 85 1 30 HELIX 12 AB3 PRO D 105 GLY D 107 5 3 HELIX 13 AB4 ASP D 137 GLY D 151 1 15 HELIX 14 AB5 GLY D 151 GLN D 156 1 6 HELIX 15 AB6 GLN D 156 THR D 163 1 8 HELIX 16 AB7 THR D 163 GLY D 176 1 14 HELIX 17 AB8 GLY D 176 LEU D 181 1 6 HELIX 18 AB9 GLN D 254 GLN D 256 5 3 HELIX 19 AC1 ASP F 4 PHE F 8 5 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N THR A 10 O ILE A 23 SHEET 5 AA1 8 THR A 94 LEU A 103 -1 O TYR A 99 N TYR A 7 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 ALA A 121 LEU A 126 -1 O LEU A 126 N ARG A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 SER A 187 PRO A 194 0 SHEET 2 AA2 4 GLU A 199 PHE A 209 -1 O TRP A 205 N ARG A 189 SHEET 3 AA2 4 PHE A 242 PRO A 251 -1 O ALA A 246 N CYS A 204 SHEET 4 AA2 4 THR A 229 VAL A 231 -1 N GLU A 230 O ALA A 247 SHEET 1 AA3 4 SER A 187 PRO A 194 0 SHEET 2 AA3 4 GLU A 199 PHE A 209 -1 O TRP A 205 N ARG A 189 SHEET 3 AA3 4 PHE A 242 PRO A 251 -1 O ALA A 246 N CYS A 204 SHEET 4 AA3 4 ARG A 235 PRO A 236 -1 N ARG A 235 O GLN A 243 SHEET 1 AA4 4 GLU A 223 ASP A 224 0 SHEET 2 AA4 4 THR A 215 ARG A 220 -1 N ARG A 220 O GLU A 223 SHEET 3 AA4 4 TYR A 258 GLN A 263 -1 O HIS A 261 N THR A 217 SHEET 4 AA4 4 VAL A 271 ARG A 273 -1 O ARG A 273 N CYS A 260 SHEET 1 AA5 4 LYS B 33 SER B 38 0 SHEET 2 AA5 4 ASN B 48 PHE B 57 -1 O SER B 55 N LYS B 33 SHEET 3 AA5 4 PHE B 88 PHE B 96 -1 O THR B 94 N LEU B 50 SHEET 4 AA5 4 GLU B 76 GLN B 77 -1 N GLU B 76 O HIS B 93 SHEET 1 AA6 4 LYS B 33 SER B 38 0 SHEET 2 AA6 4 ASN B 48 PHE B 57 -1 O SER B 55 N LYS B 33 SHEET 3 AA6 4 PHE B 88 PHE B 96 -1 O THR B 94 N LEU B 50 SHEET 4 AA6 4 SER B 81 PHE B 82 -1 N SER B 81 O TYR B 89 SHEET 1 AA7 4 LYS B 71 GLU B 72 0 SHEET 2 AA7 4 GLU B 63 LYS B 68 -1 N LYS B 68 O LYS B 71 SHEET 3 AA7 4 PHE B 104 LYS B 109 -1 O SER B 105 N LEU B 67 SHEET 4 AA7 4 GLN B 117 LYS B 120 -1 O GLN B 117 N VAL B 108 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 SER D 4 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 THR D 94 LEU D 103 -1 O TYR D 99 N TYR D 7 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O ARG D 111 N ASP D 102 SHEET 7 AA8 8 ALA D 121 LEU D 126 -1 O ILE D 124 N ASP D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 SER D 187 PRO D 194 0 SHEET 2 AA9 4 GLU D 199 PHE D 209 -1 O TRP D 205 N ARG D 189 SHEET 3 AA9 4 PHE D 242 PRO D 251 -1 O ALA D 246 N CYS D 204 SHEET 4 AA9 4 GLU D 230 VAL D 231 -1 N GLU D 230 O ALA D 247 SHEET 1 AB1 4 SER D 187 PRO D 194 0 SHEET 2 AB1 4 GLU D 199 PHE D 209 -1 O TRP D 205 N ARG D 189 SHEET 3 AB1 4 PHE D 242 PRO D 251 -1 O ALA D 246 N CYS D 204 SHEET 4 AB1 4 ARG D 235 PRO D 236 -1 N ARG D 235 O GLN D 243 SHEET 1 AB2 4 GLU D 223 ASP D 224 0 SHEET 2 AB2 4 THR D 215 ARG D 220 -1 N ARG D 220 O GLU D 223 SHEET 3 AB2 4 TYR D 258 GLN D 263 -1 O HIS D 261 N THR D 217 SHEET 4 AB2 4 VAL D 271 ARG D 273 -1 O ARG D 273 N CYS D 260 SHEET 1 AB3 4 LYS E 33 SER E 38 0 SHEET 2 AB3 4 ASN E 48 PHE E 57 -1 O SER E 55 N LYS E 33 SHEET 3 AB3 4 PHE E 88 PHE E 96 -1 O THR E 94 N LEU E 50 SHEET 4 AB3 4 GLU E 76 GLN E 77 -1 N GLU E 76 O HIS E 93 SHEET 1 AB4 4 LYS E 33 SER E 38 0 SHEET 2 AB4 4 ASN E 48 PHE E 57 -1 O SER E 55 N LYS E 33 SHEET 3 AB4 4 PHE E 88 PHE E 96 -1 O THR E 94 N LEU E 50 SHEET 4 AB4 4 SER E 81 PHE E 82 -1 N SER E 81 O TYR E 89 SHEET 1 AB5 4 LYS E 71 GLU E 72 0 SHEET 2 AB5 4 GLU E 63 LYS E 68 -1 N LYS E 68 O LYS E 71 SHEET 3 AB5 4 PHE E 104 LYS E 109 -1 O SER E 105 N LEU E 67 SHEET 4 AB5 4 GLN E 117 LYS E 120 -1 O GLN E 117 N VAL E 108 SSBOND 1 CYS A 101 CYS A 165 1555 1555 2.05 SSBOND 2 CYS A 204 CYS A 260 1555 1555 2.03 SSBOND 3 CYS B 52 CYS B 106 1555 1555 2.04 SSBOND 4 CYS D 101 CYS D 165 1555 1555 2.07 SSBOND 5 CYS D 204 CYS D 260 1555 1555 2.03 SSBOND 6 CYS E 52 CYS E 106 1555 1555 2.03 CISPEP 1 GLY A 104 PRO A 105 0 -7.43 CISPEP 2 TYR A 210 PRO A 211 0 1.73 CISPEP 3 HIS B 58 PRO B 59 0 4.97 CISPEP 4 TYR D 210 PRO D 211 0 -2.37 CISPEP 5 HIS E 58 PRO E 59 0 3.94 CRYST1 49.312 160.492 64.481 90.00 104.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020279 0.000000 0.005088 0.00000 SCALE2 0.000000 0.006231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015989 0.00000