data_5F29 # _entry.id 5F29 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5F29 WWPDB D_1000207856 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 4YS2 _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5F29 _pdbx_database_status.recvd_initial_deposition_date 2015-12-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Chin, K.H.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 1520-4995 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first 4936 _citation.page_last 4951 _citation.title 'Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.5b00633 _citation.pdbx_database_id_PubMed 26171638 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chin, K.H.' 1 ? primary 'Liang, J.M.' 2 ? primary 'Yang, J.G.' 3 ? primary 'Shih, M.S.' 4 ? primary 'Tu, Z.L.' 5 ? primary 'Wang, Y.C.' 6 ? primary 'Sun, X.H.' 7 ? primary 'Hu, N.J.' 8 ? primary 'Liang, Z.X.' 9 ? primary 'Dow, J.M.' 10 ? primary 'Ryan, R.P.' 11 ? primary 'Chou, S.H.' 12 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5F29 _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.489 _cell.length_a_esd ? _cell.length_b 47.297 _cell.length_b_esd ? _cell.length_c 70.174 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Na+/H+ antiporter-like protein' 8791.772 2 ? ? 'UNP RESIDUES 400-614' ? 2 non-polymer syn ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 658.412 1 ? ? ? ? 3 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'TSLYEIQ(MSE)LNYKYENIQLRNFPFGGDIIFVRIIRNNESIVPHGDTQLRYGDRLIVTGAKEYVDELKQELEFYF' _entity_poly.pdbx_seq_one_letter_code_can TSLYEIQMLNYKYENIQLRNFPFGGDIIFVRIIRNNESIVPHGDTQLRYGDRLIVTGAKEYVDELKQELEFYF _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 SER n 1 3 LEU n 1 4 TYR n 1 5 GLU n 1 6 ILE n 1 7 GLN n 1 8 MSE n 1 9 LEU n 1 10 ASN n 1 11 TYR n 1 12 LYS n 1 13 TYR n 1 14 GLU n 1 15 ASN n 1 16 ILE n 1 17 GLN n 1 18 LEU n 1 19 ARG n 1 20 ASN n 1 21 PHE n 1 22 PRO n 1 23 PHE n 1 24 GLY n 1 25 GLY n 1 26 ASP n 1 27 ILE n 1 28 ILE n 1 29 PHE n 1 30 VAL n 1 31 ARG n 1 32 ILE n 1 33 ILE n 1 34 ARG n 1 35 ASN n 1 36 ASN n 1 37 GLU n 1 38 SER n 1 39 ILE n 1 40 VAL n 1 41 PRO n 1 42 HIS n 1 43 GLY n 1 44 ASP n 1 45 THR n 1 46 GLN n 1 47 LEU n 1 48 ARG n 1 49 TYR n 1 50 GLY n 1 51 ASP n 1 52 ARG n 1 53 LEU n 1 54 ILE n 1 55 VAL n 1 56 THR n 1 57 GLY n 1 58 ALA n 1 59 LYS n 1 60 GLU n 1 61 TYR n 1 62 VAL n 1 63 ASP n 1 64 GLU n 1 65 LEU n 1 66 LYS n 1 67 GLN n 1 68 GLU n 1 69 LEU n 1 70 GLU n 1 71 PHE n 1 72 TYR n 1 73 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 73 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'kefC, ERS154949_00406' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli O103:H2 str. 12009' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 585395 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A077VS08_STAAU _struct_ref.pdbx_db_accession A0A077VS08 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TSLYEIQMLNYKYENIQLRNFPFGGDIIFVRIIRNNESIVPHGDTQLRYGDRLIVTGAKEYVDELKQELEFYF _struct_ref.pdbx_align_begin 542 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5F29 A 1 ? 73 ? A0A077VS08 542 ? 614 ? 143 215 2 1 5F29 B 1 ? 73 ? A0A077VS08 542 ? 614 ? 143 215 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BA non-polymer . ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 'C20 H24 N10 O12 P2' 658.412 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5F29 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Tris 0.1M pH 7.0 PEG 4000 15% ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL12B2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12B2 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5F29 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.81 _reflns.d_resolution_low 23.5 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12747 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] 2.6000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -0.8313 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -1.7687 _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5F29 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.821 _refine.ls_d_res_low 20.744 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12417 _refine.ls_number_reflns_R_free 1238 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.39 _refine.ls_percent_reflns_R_free 9.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2174 _refine.ls_R_factor_R_free 0.2553 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2011 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol 61.628 _refine.solvent_model_param_ksol 0.373 _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.03 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.23 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1179 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1289 _refine_hist.d_res_high 1.821 _refine_hist.d_res_low 20.744 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1249 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.202 ? 1693 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.435 ? 470 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.090 ? 182 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 214 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8206 1.8934 . . 123 1085 86.00 . . . 0.3019 . 0.2932 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8934 1.9795 . . 128 1182 93.00 . . . 0.3018 . 0.2642 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9795 2.0838 . . 132 1215 96.00 . . . 0.2998 . 0.2550 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0838 2.2142 . . 135 1238 98.00 . . . 0.2625 . 0.2423 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2142 2.3849 . . 139 1238 98.00 . . . 0.2559 . 0.2234 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3849 2.6245 . . 141 1284 99.00 . . . 0.2706 . 0.2479 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6245 3.0033 . . 143 1282 100.00 . . . 0.2803 . 0.2292 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0033 3.7801 . . 145 1301 100.00 . . . 0.2677 . 0.1946 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7801 3.901 . . 152 1354 98.00 . . . 0.2112 . 0.1863 . . . . . . . . . . # _struct.entry_id 5F29 _struct.title 'Structure of RCK domain with cda' _struct.pdbx_descriptor 'Na+/H+ antiporter-like protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5F29 _struct_keywords.text 'RCK domain, cda, CpaA, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 10 ? GLU A 14 ? ASN A 152 GLU A 156 5 ? 5 HELX_P HELX_P2 AA2 GLN A 17 ? PHE A 21 ? GLN A 159 PHE A 163 5 ? 5 HELX_P HELX_P3 AA3 ALA A 58 ? GLU A 70 ? ALA A 200 GLU A 212 1 ? 13 HELX_P HELX_P4 AA4 ASN B 10 ? GLU B 14 ? ASN B 152 GLU B 156 5 ? 5 HELX_P HELX_P5 AA5 GLN B 17 ? PHE B 21 ? GLN B 159 PHE B 163 5 ? 5 HELX_P HELX_P6 AA6 ALA B 58 ? PHE B 71 ? ALA B 200 PHE B 213 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLN 7 C ? ? ? 1_555 A MSE 8 N ? ? A GLN 149 A MSE 150 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 8 C ? ? ? 1_555 A LEU 9 N ? ? A MSE 150 A LEU 151 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? B GLN 7 C ? ? ? 1_555 B MSE 8 N ? ? B GLN 149 B MSE 150 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? B MSE 8 C ? ? ? 1_555 B LEU 9 N ? ? B MSE 150 B LEU 151 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 4 ? GLN A 7 ? TYR A 146 GLN A 149 AA1 2 ARG A 52 ? GLY A 57 ? ARG A 194 GLY A 199 AA1 3 ILE A 27 ? ARG A 34 ? ILE A 169 ARG A 176 AA1 4 GLU A 37 ? ILE A 39 ? GLU A 179 ILE A 181 AA2 1 TYR B 4 ? GLN B 7 ? TYR B 146 GLN B 149 AA2 2 ARG B 52 ? GLY B 57 ? ARG B 194 GLY B 199 AA2 3 ILE B 27 ? ARG B 34 ? ILE B 169 ARG B 176 AA2 4 GLU B 37 ? ILE B 39 ? GLU B 179 ILE B 181 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 6 ? N ILE A 148 O LEU A 53 ? O LEU A 195 AA1 2 3 O ARG A 52 ? O ARG A 194 N ILE A 33 ? N ILE A 175 AA1 3 4 N ILE A 32 ? N ILE A 174 O ILE A 39 ? O ILE A 181 AA2 1 2 N ILE B 6 ? N ILE B 148 O LEU B 53 ? O LEU B 195 AA2 2 3 O ILE B 54 ? O ILE B 196 N ARG B 31 ? N ARG B 173 AA2 3 4 N ILE B 32 ? N ILE B 174 O ILE B 39 ? O ILE B 181 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 2BA _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'binding site for residue 2BA A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LEU A 18 ? LEU A 160 . ? 1_555 ? 2 AC1 18 ARG A 19 ? ARG A 161 . ? 1_555 ? 3 AC1 18 PHE A 23 ? PHE A 165 . ? 1_555 ? 4 AC1 18 ILE A 28 ? ILE A 170 . ? 1_555 ? 5 AC1 18 PHE A 29 ? PHE A 171 . ? 1_555 ? 6 AC1 18 PRO A 41 ? PRO A 183 . ? 1_555 ? 7 AC1 18 HIS A 42 ? HIS A 184 . ? 1_555 ? 8 AC1 18 GLY A 43 ? GLY A 185 . ? 1_555 ? 9 AC1 18 HOH D . ? HOH A 409 . ? 1_555 ? 10 AC1 18 LEU B 18 ? LEU B 160 . ? 1_555 ? 11 AC1 18 ARG B 19 ? ARG B 161 . ? 1_555 ? 12 AC1 18 PHE B 23 ? PHE B 165 . ? 1_555 ? 13 AC1 18 ILE B 28 ? ILE B 170 . ? 1_555 ? 14 AC1 18 PHE B 29 ? PHE B 171 . ? 1_555 ? 15 AC1 18 PRO B 41 ? PRO B 183 . ? 1_555 ? 16 AC1 18 HIS B 42 ? HIS B 184 . ? 1_555 ? 17 AC1 18 GLY B 43 ? GLY B 185 . ? 1_555 ? 18 AC1 18 HOH E . ? HOH B 305 . ? 1_555 ? # _database_PDB_matrix.entry_id 5F29 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5F29 _atom_sites.fract_transf_matrix[1][1] 0.024103 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021143 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014250 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 143 143 THR THR A . n A 1 2 SER 2 144 144 SER SER A . n A 1 3 LEU 3 145 145 LEU LEU A . n A 1 4 TYR 4 146 146 TYR TYR A . n A 1 5 GLU 5 147 147 GLU GLU A . n A 1 6 ILE 6 148 148 ILE ILE A . n A 1 7 GLN 7 149 149 GLN GLN A . n A 1 8 MSE 8 150 150 MSE MSE A . n A 1 9 LEU 9 151 151 LEU LEU A . n A 1 10 ASN 10 152 152 ASN ASN A . n A 1 11 TYR 11 153 153 TYR TYR A . n A 1 12 LYS 12 154 154 LYS LYS A . n A 1 13 TYR 13 155 155 TYR TYR A . n A 1 14 GLU 14 156 156 GLU GLU A . n A 1 15 ASN 15 157 157 ASN ASN A . n A 1 16 ILE 16 158 158 ILE ILE A . n A 1 17 GLN 17 159 159 GLN GLN A . n A 1 18 LEU 18 160 160 LEU LEU A . n A 1 19 ARG 19 161 161 ARG ARG A . n A 1 20 ASN 20 162 162 ASN ASN A . n A 1 21 PHE 21 163 163 PHE PHE A . n A 1 22 PRO 22 164 164 PRO PRO A . n A 1 23 PHE 23 165 165 PHE PHE A . n A 1 24 GLY 24 166 166 GLY GLY A . n A 1 25 GLY 25 167 167 GLY GLY A . n A 1 26 ASP 26 168 168 ASP ASP A . n A 1 27 ILE 27 169 169 ILE ILE A . n A 1 28 ILE 28 170 170 ILE ILE A . n A 1 29 PHE 29 171 171 PHE PHE A . n A 1 30 VAL 30 172 172 VAL VAL A . n A 1 31 ARG 31 173 173 ARG ARG A . n A 1 32 ILE 32 174 174 ILE ILE A . n A 1 33 ILE 33 175 175 ILE ILE A . n A 1 34 ARG 34 176 176 ARG ARG A . n A 1 35 ASN 35 177 177 ASN ASN A . n A 1 36 ASN 36 178 178 ASN ASN A . n A 1 37 GLU 37 179 179 GLU GLU A . n A 1 38 SER 38 180 180 SER SER A . n A 1 39 ILE 39 181 181 ILE ILE A . n A 1 40 VAL 40 182 182 VAL VAL A . n A 1 41 PRO 41 183 183 PRO PRO A . n A 1 42 HIS 42 184 184 HIS HIS A . n A 1 43 GLY 43 185 185 GLY GLY A . n A 1 44 ASP 44 186 186 ASP ASP A . n A 1 45 THR 45 187 187 THR THR A . n A 1 46 GLN 46 188 188 GLN GLN A . n A 1 47 LEU 47 189 189 LEU LEU A . n A 1 48 ARG 48 190 190 ARG ARG A . n A 1 49 TYR 49 191 191 TYR TYR A . n A 1 50 GLY 50 192 192 GLY GLY A . n A 1 51 ASP 51 193 193 ASP ASP A . n A 1 52 ARG 52 194 194 ARG ARG A . n A 1 53 LEU 53 195 195 LEU LEU A . n A 1 54 ILE 54 196 196 ILE ILE A . n A 1 55 VAL 55 197 197 VAL VAL A . n A 1 56 THR 56 198 198 THR THR A . n A 1 57 GLY 57 199 199 GLY GLY A . n A 1 58 ALA 58 200 200 ALA ALA A . n A 1 59 LYS 59 201 201 LYS LYS A . n A 1 60 GLU 60 202 202 GLU GLU A . n A 1 61 TYR 61 203 203 TYR TYR A . n A 1 62 VAL 62 204 204 VAL VAL A . n A 1 63 ASP 63 205 205 ASP ASP A . n A 1 64 GLU 64 206 206 GLU GLU A . n A 1 65 LEU 65 207 207 LEU LEU A . n A 1 66 LYS 66 208 208 LYS LYS A . n A 1 67 GLN 67 209 209 GLN GLN A . n A 1 68 GLU 68 210 210 GLU GLU A . n A 1 69 LEU 69 211 211 LEU LEU A . n A 1 70 GLU 70 212 212 GLU GLU A . n A 1 71 PHE 71 213 ? ? ? A . n A 1 72 TYR 72 214 ? ? ? A . n A 1 73 PHE 73 215 ? ? ? A . n B 1 1 THR 1 143 143 THR THR B . n B 1 2 SER 2 144 144 SER SER B . n B 1 3 LEU 3 145 145 LEU LEU B . n B 1 4 TYR 4 146 146 TYR TYR B . n B 1 5 GLU 5 147 147 GLU GLU B . n B 1 6 ILE 6 148 148 ILE ILE B . n B 1 7 GLN 7 149 149 GLN GLN B . n B 1 8 MSE 8 150 150 MSE MSE B . n B 1 9 LEU 9 151 151 LEU LEU B . n B 1 10 ASN 10 152 152 ASN ASN B . n B 1 11 TYR 11 153 153 TYR TYR B . n B 1 12 LYS 12 154 154 LYS LYS B . n B 1 13 TYR 13 155 155 TYR TYR B . n B 1 14 GLU 14 156 156 GLU GLU B . n B 1 15 ASN 15 157 157 ASN ASN B . n B 1 16 ILE 16 158 158 ILE ILE B . n B 1 17 GLN 17 159 159 GLN GLN B . n B 1 18 LEU 18 160 160 LEU LEU B . n B 1 19 ARG 19 161 161 ARG ARG B . n B 1 20 ASN 20 162 162 ASN ASN B . n B 1 21 PHE 21 163 163 PHE PHE B . n B 1 22 PRO 22 164 164 PRO PRO B . n B 1 23 PHE 23 165 165 PHE PHE B . n B 1 24 GLY 24 166 166 GLY GLY B . n B 1 25 GLY 25 167 167 GLY GLY B . n B 1 26 ASP 26 168 168 ASP ASP B . n B 1 27 ILE 27 169 169 ILE ILE B . n B 1 28 ILE 28 170 170 ILE ILE B . n B 1 29 PHE 29 171 171 PHE PHE B . n B 1 30 VAL 30 172 172 VAL VAL B . n B 1 31 ARG 31 173 173 ARG ARG B . n B 1 32 ILE 32 174 174 ILE ILE B . n B 1 33 ILE 33 175 175 ILE ILE B . n B 1 34 ARG 34 176 176 ARG ARG B . n B 1 35 ASN 35 177 177 ASN ASN B . n B 1 36 ASN 36 178 178 ASN ASN B . n B 1 37 GLU 37 179 179 GLU GLU B . n B 1 38 SER 38 180 180 SER SER B . n B 1 39 ILE 39 181 181 ILE ILE B . n B 1 40 VAL 40 182 182 VAL VAL B . n B 1 41 PRO 41 183 183 PRO PRO B . n B 1 42 HIS 42 184 184 HIS HIS B . n B 1 43 GLY 43 185 185 GLY GLY B . n B 1 44 ASP 44 186 186 ASP ASP B . n B 1 45 THR 45 187 187 THR THR B . n B 1 46 GLN 46 188 188 GLN GLN B . n B 1 47 LEU 47 189 189 LEU LEU B . n B 1 48 ARG 48 190 190 ARG ARG B . n B 1 49 TYR 49 191 191 TYR TYR B . n B 1 50 GLY 50 192 192 GLY GLY B . n B 1 51 ASP 51 193 193 ASP ASP B . n B 1 52 ARG 52 194 194 ARG ARG B . n B 1 53 LEU 53 195 195 LEU LEU B . n B 1 54 ILE 54 196 196 ILE ILE B . n B 1 55 VAL 55 197 197 VAL VAL B . n B 1 56 THR 56 198 198 THR THR B . n B 1 57 GLY 57 199 199 GLY GLY B . n B 1 58 ALA 58 200 200 ALA ALA B . n B 1 59 LYS 59 201 201 LYS LYS B . n B 1 60 GLU 60 202 202 GLU GLU B . n B 1 61 TYR 61 203 203 TYR TYR B . n B 1 62 VAL 62 204 204 VAL VAL B . n B 1 63 ASP 63 205 205 ASP ASP B . n B 1 64 GLU 64 206 206 GLU GLU B . n B 1 65 LEU 65 207 207 LEU LEU B . n B 1 66 LYS 66 208 208 LYS LYS B . n B 1 67 GLN 67 209 209 GLN GLN B . n B 1 68 GLU 68 210 210 GLU GLU B . n B 1 69 LEU 69 211 211 LEU LEU B . n B 1 70 GLU 70 212 212 GLU GLU B . n B 1 71 PHE 71 213 213 PHE PHE B . n B 1 72 TYR 72 214 ? ? ? B . n B 1 73 PHE 73 215 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2BA 1 301 100 2BA 2BA A . D 3 HOH 1 401 79 HOH HOH A . D 3 HOH 2 402 83 HOH HOH A . D 3 HOH 3 403 62 HOH HOH A . D 3 HOH 4 404 3 HOH HOH A . D 3 HOH 5 405 25 HOH HOH A . D 3 HOH 6 406 61 HOH HOH A . D 3 HOH 7 407 97 HOH HOH A . D 3 HOH 8 408 15 HOH HOH A . D 3 HOH 9 409 20 HOH HOH A . D 3 HOH 10 410 26 HOH HOH A . D 3 HOH 11 411 99 HOH HOH A . D 3 HOH 12 412 89 HOH HOH A . D 3 HOH 13 413 37 HOH HOH A . D 3 HOH 14 414 71 HOH HOH A . D 3 HOH 15 415 22 HOH HOH A . D 3 HOH 16 416 57 HOH HOH A . D 3 HOH 17 417 67 HOH HOH A . D 3 HOH 18 418 51 HOH HOH A . D 3 HOH 19 419 82 HOH HOH A . D 3 HOH 20 420 73 HOH HOH A . D 3 HOH 21 421 92 HOH HOH A . D 3 HOH 22 422 75 HOH HOH A . D 3 HOH 23 423 91 HOH HOH A . D 3 HOH 24 424 86 HOH HOH A . D 3 HOH 25 425 21 HOH HOH A . D 3 HOH 26 426 58 HOH HOH A . D 3 HOH 27 427 68 HOH HOH A . D 3 HOH 28 428 64 HOH HOH A . D 3 HOH 29 429 69 HOH HOH A . E 3 HOH 1 301 96 HOH HOH B . E 3 HOH 2 302 18 HOH HOH B . E 3 HOH 3 303 13 HOH HOH B . E 3 HOH 4 304 39 HOH HOH B . E 3 HOH 5 305 46 HOH HOH B . E 3 HOH 6 306 8 HOH HOH B . E 3 HOH 7 307 70 HOH HOH B . E 3 HOH 8 308 49 HOH HOH B . E 3 HOH 9 309 11 HOH HOH B . E 3 HOH 10 310 66 HOH HOH B . E 3 HOH 11 311 10 HOH HOH B . E 3 HOH 12 312 87 HOH HOH B . E 3 HOH 13 313 88 HOH HOH B . E 3 HOH 14 314 7 HOH HOH B . E 3 HOH 15 315 102 HOH HOH B . E 3 HOH 16 316 16 HOH HOH B . E 3 HOH 17 317 60 HOH HOH B . E 3 HOH 18 318 101 HOH HOH B . E 3 HOH 19 319 59 HOH HOH B . E 3 HOH 20 320 45 HOH HOH B . E 3 HOH 21 321 98 HOH HOH B . E 3 HOH 22 322 94 HOH HOH B . E 3 HOH 23 323 56 HOH HOH B . E 3 HOH 24 324 50 HOH HOH B . E 3 HOH 25 325 42 HOH HOH B . E 3 HOH 26 326 78 HOH HOH B . E 3 HOH 27 327 80 HOH HOH B . E 3 HOH 28 328 48 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 150 ? MET 'modified residue' 2 B MSE 8 B MSE 150 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1480 ? 1 MORE -7 ? 1 'SSA (A^2)' 7690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-02-01 2 'Structure model' 1 1 2018-08-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.7.3_928)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 403 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 414 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_544 _pdbx_validate_symm_contact.dist 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 212 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLU _pdbx_validate_rmsd_angle.auth_seq_id_2 212 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 O _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLU _pdbx_validate_rmsd_angle.auth_seq_id_3 212 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 107.21 _pdbx_validate_rmsd_angle.angle_target_value 120.10 _pdbx_validate_rmsd_angle.angle_deviation -12.89 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 157 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 68.95 _pdbx_validate_torsion.psi -8.23 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 213 ? A PHE 71 2 1 Y 1 A TYR 214 ? A TYR 72 3 1 Y 1 A PHE 215 ? A PHE 73 4 1 Y 1 B TYR 214 ? B TYR 72 5 1 Y 1 B PHE 215 ? B PHE 73 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; 2BA 3 water HOH #