HEADER DE NOVO PROTEIN 02-DEC-15 5F2Y TITLE A DE NOVO DESIGNED HEPTAMERIC COILED COIL CC-HEPT-HOMOCYS-H-E COMPND MOL_ID: 1; COMPND 2 MOLECULE: CC-HEPT-HCYS-H-E; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS COILED COIL, HEPTAMER, DE NOVO DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BURTON,R.L.BRADY,D.N.WOOLFSON REVDAT 4 06-MAR-24 5F2Y 1 HETSYN REVDAT 3 10-JAN-24 5F2Y 1 REMARK REVDAT 2 07-SEP-16 5F2Y 1 JRNL REVDAT 1 06-JUL-16 5F2Y 0 JRNL AUTH A.J.BURTON,A.R.THOMSON,W.M.DAWSON,R.L.BRADY,D.N.WOOLFSON JRNL TITL INSTALLING HYDROLYTIC ACTIVITY INTO A COMPLETELY DE NOVO JRNL TITL 2 PROTEIN FRAMEWORK. JRNL REF NAT.CHEM. V. 8 837 2016 JRNL REFN ESSN 1755-4349 JRNL PMID 27554410 JRNL DOI 10.1038/NCHEM.2555 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0934 - 3.5898 0.99 2749 146 0.2086 0.2526 REMARK 3 2 3.5898 - 2.8499 1.00 2689 143 0.2297 0.2755 REMARK 3 3 2.8499 - 2.4898 0.99 2713 138 0.2175 0.2649 REMARK 3 4 2.4898 - 2.2622 1.00 2715 144 0.2314 0.2935 REMARK 3 5 2.2622 - 2.1001 1.00 2692 135 0.2501 0.3028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1386 REMARK 3 ANGLE : 0.913 1857 REMARK 3 CHIRALITY : 0.041 203 REMARK 3 PLANARITY : 0.003 238 REMARK 3 DIHEDRAL : 14.571 506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.0775 2.0199 25.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.3242 T22: 0.3208 REMARK 3 T33: 0.5230 T12: -0.0235 REMARK 3 T13: 0.0745 T23: 0.0933 REMARK 3 L TENSOR REMARK 3 L11: 0.1918 L22: 0.2546 REMARK 3 L33: 0.1866 L12: -0.0155 REMARK 3 L13: 0.1547 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.1893 S12: 0.0300 S13: 0.8845 REMARK 3 S21: -0.0074 S22: -0.0647 S23: -0.2205 REMARK 3 S31: -0.3434 S32: 0.1078 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.0891 -17.0928 28.7051 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.2723 REMARK 3 T33: 0.3540 T12: 0.0476 REMARK 3 T13: -0.0045 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.4196 L22: 0.4388 REMARK 3 L33: 0.2593 L12: -0.0493 REMARK 3 L13: 0.3231 L23: 0.0949 REMARK 3 S TENSOR REMARK 3 S11: 0.0850 S12: 0.2783 S13: -1.0599 REMARK 3 S21: -0.1865 S22: -0.0613 S23: -0.2247 REMARK 3 S31: 0.1291 S32: 0.1461 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.4132 -1.5427 18.5416 REMARK 3 T TENSOR REMARK 3 T11: 0.3042 T22: 0.3685 REMARK 3 T33: 0.3388 T12: 0.0190 REMARK 3 T13: 0.0513 T23: 0.1348 REMARK 3 L TENSOR REMARK 3 L11: 0.3065 L22: 0.6220 REMARK 3 L33: 0.4968 L12: 0.0164 REMARK 3 L13: 0.2819 L23: -0.3362 REMARK 3 S TENSOR REMARK 3 S11: 0.1774 S12: 0.3497 S13: 0.5719 REMARK 3 S21: -0.1725 S22: 0.0043 S23: -0.0980 REMARK 3 S31: -0.3092 S32: 0.2321 S33: -0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.5579 -9.6477 16.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.4902 REMARK 3 T33: 0.2965 T12: 0.0347 REMARK 3 T13: 0.0232 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.1702 L22: 0.0777 REMARK 3 L33: 0.5646 L12: 0.0609 REMARK 3 L13: 0.3058 L23: 0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 1.6202 S13: -0.0561 REMARK 3 S21: -0.2414 S22: -0.2705 S23: 0.0315 REMARK 3 S31: -0.0468 S32: -0.5080 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.9426 -16.6951 21.0055 REMARK 3 T TENSOR REMARK 3 T11: 0.3859 T22: 0.3209 REMARK 3 T33: 0.4178 T12: -0.0138 REMARK 3 T13: 0.0398 T23: -0.1103 REMARK 3 L TENSOR REMARK 3 L11: 0.0877 L22: 0.2785 REMARK 3 L33: 0.2415 L12: 0.0094 REMARK 3 L13: 0.1511 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.8605 S13: -0.8705 REMARK 3 S21: -0.6423 S22: -0.1777 S23: 0.2261 REMARK 3 S31: 0.1774 S32: -0.1413 S33: 0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.3768 -2.2178 32.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.2692 T22: 0.3093 REMARK 3 T33: 0.4297 T12: -0.0084 REMARK 3 T13: 0.0450 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.3466 L22: 0.2468 REMARK 3 L33: 0.4644 L12: 0.0268 REMARK 3 L13: 0.3968 L23: 0.0158 REMARK 3 S TENSOR REMARK 3 S11: 0.2951 S12: -0.5128 S13: 0.1216 REMARK 3 S21: 0.0788 S22: -0.3389 S23: -0.2665 REMARK 3 S31: -0.5775 S32: 0.3969 S33: -0.0009 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.6917 -10.8885 33.6982 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.3226 REMARK 3 T33: 0.3458 T12: 0.0049 REMARK 3 T13: -0.0332 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.3165 L22: 0.2073 REMARK 3 L33: 0.4257 L12: -0.0447 REMARK 3 L13: 0.3539 L23: -0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: -0.3537 S13: -0.4206 REMARK 3 S21: 0.1334 S22: -0.0392 S23: -0.0382 REMARK 3 S31: 0.2814 S32: 0.5061 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14347 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4PNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES AT PH 7.0 WITH 18% W/V PEG REMARK 280 12000., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 18.85806 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.09031 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 18.85806 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 32.09031 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 LYS B 27 REMARK 465 ALA B 28 REMARK 465 LEU B 29 REMARK 465 ARG B 30 REMARK 465 GLY B 31 REMARK 465 LYS C 27 REMARK 465 ALA C 28 REMARK 465 LEU C 29 REMARK 465 ARG C 30 REMARK 465 GLY C 31 REMARK 465 GLU D 25 REMARK 465 ALA D 26 REMARK 465 LYS D 27 REMARK 465 ALA D 28 REMARK 465 LEU D 29 REMARK 465 ARG D 30 REMARK 465 GLY D 31 REMARK 465 LEU E 29 REMARK 465 ARG E 30 REMARK 465 GLY E 31 REMARK 465 LYS F 27 REMARK 465 ALA F 28 REMARK 465 LEU F 29 REMARK 465 ARG F 30 REMARK 465 GLY F 31 REMARK 465 ARG G 30 REMARK 465 GLY G 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 LYS B 6 CD CE NZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 LYS C 13 CE NZ REMARK 470 TRP C 20 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 20 CZ3 CH2 REMARK 470 ARG C 23 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 GLU C 25 CG CD OE1 OE2 REMARK 470 ALA C 26 C O REMARK 470 LYS D 13 CG CD CE NZ REMARK 470 TRP D 20 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 20 CZ3 CH2 REMARK 470 HIS D 22 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 24 C O CG CD OE1 OE2 REMARK 470 LYS E 6 CE NZ REMARK 470 LYS E 13 CG CD CE NZ REMARK 470 GLU E 25 CG CD OE1 OE2 REMARK 470 LYS F 6 CG CD CE NZ REMARK 470 LYS F 13 NZ REMARK 470 GLU F 25 CG CD OE1 OE2 REMARK 470 LEU G 29 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 25 CD REMARK 480 GLU B 10 CD REMARK 480 LYS G 6 CE NZ REMARK 480 GLU G 25 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 9 O HOH C 101 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 40.52 -88.74 REMARK 500 GLU B 25 40.42 -101.26 REMARK 500 ARG C 23 37.58 -87.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 107 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH B 108 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH B 109 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH C 114 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH E 110 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH F 116 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH F 117 DISTANCE = 8.45 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PNA RELATED DB: PDB REMARK 900 PARENT COILED COIL HEPTAMER STRUCTURE. DBREF 5F2Y A 1 31 PDB 5F2Y 5F2Y 1 31 DBREF 5F2Y B 1 31 PDB 5F2Y 5F2Y 1 31 DBREF 5F2Y C 1 31 PDB 5F2Y 5F2Y 1 31 DBREF 5F2Y D 1 31 PDB 5F2Y 5F2Y 1 31 DBREF 5F2Y E 1 31 PDB 5F2Y 5F2Y 1 31 DBREF 5F2Y F 1 31 PDB 5F2Y 5F2Y 1 31 DBREF 5F2Y G 1 31 PDB 5F2Y 5F2Y 1 31 SEQRES 1 A 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 A 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 A 31 LYS ALA LEU ARG GLY SEQRES 1 B 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 B 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 B 31 LYS ALA LEU ARG GLY SEQRES 1 C 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 C 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 C 31 LYS ALA LEU ARG GLY SEQRES 1 D 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 D 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 D 31 LYS ALA LEU ARG GLY SEQRES 1 E 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 E 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 E 31 LYS ALA LEU ARG GLY SEQRES 1 F 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 F 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 F 31 LYS ALA LEU ARG GLY SEQRES 1 G 31 ACE GLY GLU ILE ALA LYS ALA LEU ARG GLU ILE ALA LYS SEQRES 2 G 31 ALA LEU ARG GLU HCS ALA TRP ALA HIS ARG GLU GLU ALA SEQRES 3 G 31 LYS ALA LEU ARG GLY HET ACE A 1 3 HET HCS A 18 7 HET ACE B 1 3 HET HCS B 18 7 HET ACE C 1 3 HET HCS C 18 7 HET ACE D 1 3 HET HCS D 18 7 HET ACE E 1 3 HET HCS E 18 7 HET ACE F 1 3 HET HCS F 18 7 HET ACE G 1 3 HET HCS G 18 7 HETNAM ACE ACETYL GROUP HETNAM HCS 2-AMINO-4-MERCAPTO-BUTYRIC ACID HETSYN HCS L-HOMOCYSTEINE FORMUL 1 ACE 7(C2 H4 O) FORMUL 1 HCS 7(C4 H9 N O2 S) FORMUL 8 HOH *85(H2 O) HELIX 1 AA1 GLY A 2 ALA A 28 1 27 HELIX 2 AA2 GLY B 2 GLU B 24 1 23 HELIX 3 AA3 GLY C 2 ARG C 23 1 22 HELIX 4 AA4 GLY D 2 GLU D 24 1 23 HELIX 5 AA5 GLY E 2 ALA E 28 1 27 HELIX 6 AA6 GLY F 2 GLU F 24 1 23 HELIX 7 AA7 GLY G 2 ALA G 28 1 27 LINK C ACE A 1 N GLY A 2 1555 1555 1.34 LINK C GLU A 17 N HCS A 18 1555 1555 1.33 LINK C HCS A 18 N ALA A 19 1555 1555 1.34 LINK C ACE B 1 N GLY B 2 1555 1555 1.33 LINK C GLU B 17 N HCS B 18 1555 1555 1.33 LINK C HCS B 18 N ALA B 19 1555 1555 1.33 LINK C ACE C 1 N GLY C 2 1555 1555 1.33 LINK C GLU C 17 N HCS C 18 1555 1555 1.33 LINK C HCS C 18 N ALA C 19 1555 1555 1.33 LINK C ACE D 1 N GLY D 2 1555 1555 1.33 LINK C GLU D 17 N HCS D 18 1555 1555 1.33 LINK C HCS D 18 N ALA D 19 1555 1555 1.33 LINK C ACE E 1 N GLY E 2 1555 1555 1.34 LINK C GLU E 17 N HCS E 18 1555 1555 1.33 LINK C HCS E 18 N ALA E 19 1555 1555 1.33 LINK C ACE F 1 N GLY F 2 1555 1555 1.33 LINK C GLU F 17 N HCS F 18 1555 1555 1.33 LINK C HCS F 18 N ALA F 19 1555 1555 1.33 LINK C ACE G 1 N GLY G 2 1555 1555 1.33 LINK C GLU G 17 N HCS G 18 1555 1555 1.33 LINK C HCS G 18 N ALA G 19 1555 1555 1.33 CRYST1 62.250 61.980 68.710 90.00 110.92 90.00 I 1 2 1 28 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016064 0.000000 0.006141 0.00000 SCALE2 0.000000 0.016134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015581 0.00000 HETATM 1 C ACE A 1 -73.067 6.508 31.311 1.00 42.02 C HETATM 2 O ACE A 1 -73.317 7.321 30.418 1.00 52.81 O HETATM 3 CH3 ACE A 1 -72.651 6.960 32.685 1.00 41.48 C