HEADER TRANSFERASE 02-DEC-15 5F3D TITLE STRUCTURE OF QUINOLINATE SYNTHASE IN COMPLEX WITH REACTION TITLE 2 INTERMEDIATE W COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 GENE: NADA, TM_1644; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS NAD BIOSYNTHESIS, IRON SULFUR CLUSTER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 6 10-JAN-24 5F3D 1 REMARK REVDAT 5 06-SEP-17 5F3D 1 REMARK REVDAT 4 16-AUG-17 5F3D 1 REMARK REVDAT 3 21-SEP-16 5F3D 1 JRNL REVDAT 2 07-SEP-16 5F3D 1 JRNL REVDAT 1 31-AUG-16 5F3D 0 JRNL AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,D.REICHMANN,P.AMARA, JRNL AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS JRNL TITL CRYSTAL STRUCTURES OF QUINOLINATE SYNTHASE IN COMPLEX WITH A JRNL TITL 2 SUBSTRATE ANALOGUE, THE CONDENSATION INTERMEDIATE, AND JRNL TITL 3 SUBSTRATE-DERIVED PRODUCT. JRNL REF J.AM.CHEM.SOC. V. 138 11802 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27545412 JRNL DOI 10.1021/JACS.6B05884 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.V.CHERRIER,A.CHAN,C.DARNAUX,D.REICHMANN,P.AMARA, REMARK 1 AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS REMARK 1 TITL STRUCTURE OF THE FE4S4 QUINOLINATE SYNTHASE NADA FROM REMARK 1 TITL 2 THERMOTOGA MARITIMA REMARK 1 REF J.AM.CHEM.SOC. V. 136 5253 2014 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 24650327 REMARK 1 DOI 10.1021/JA501431B REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 22317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.543 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2592 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2572 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3526 ; 1.544 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5980 ; 0.951 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;35.652 ;24.954 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;13.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2832 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 521 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1247 ; 2.714 ; 2.777 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1246 ; 2.707 ; 2.773 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1567 ; 3.886 ; 5.190 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1568 ; 3.889 ; 5.193 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1345 ; 3.774 ; 3.297 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1332 ; 3.669 ; 3.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1911 ; 5.580 ; 5.882 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3041 ; 8.520 ;36.336 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2928 ; 8.338 ;35.027 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 78 REMARK 3 RESIDUE RANGE : A 257 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4826 -4.3836 24.3062 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0358 REMARK 3 T33: 0.0539 T12: -0.0066 REMARK 3 T13: -0.0235 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4863 L22: 0.2094 REMARK 3 L33: 1.1467 L12: -0.1448 REMARK 3 L13: 0.1356 L23: -0.1099 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0718 S13: 0.0257 REMARK 3 S21: -0.0445 S22: 0.0512 S23: 0.0286 REMARK 3 S31: 0.1042 S32: -0.1274 S33: -0.0486 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 165 REMARK 3 RESIDUE RANGE : A 280 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7295 8.9284 16.8389 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0560 REMARK 3 T33: 0.0236 T12: -0.0283 REMARK 3 T13: 0.0002 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.4402 L22: 0.4525 REMARK 3 L33: 2.1206 L12: 0.2369 REMARK 3 L13: -0.0619 L23: 0.4377 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.1217 S13: -0.0453 REMARK 3 S21: 0.0254 S22: 0.0253 S23: -0.0119 REMARK 3 S31: -0.0656 S32: 0.0229 S33: 0.0386 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7484 1.0552 -1.4331 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.0163 REMARK 3 T33: 0.0272 T12: -0.0093 REMARK 3 T13: -0.0448 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5547 L22: 0.4553 REMARK 3 L33: 1.4562 L12: -0.7756 REMARK 3 L13: 0.3408 L23: -0.4595 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.1076 S13: 0.0270 REMARK 3 S21: -0.0405 S22: -0.0599 S23: -0.0001 REMARK 3 S31: 0.0158 S32: 0.1217 S33: 0.0210 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 83 REMARK 3 RESIDUE RANGE : A 166 A 170 REMARK 3 RESIDUE RANGE : A 252 A 256 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7396 -6.9424 11.5445 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0208 REMARK 3 T33: 0.0173 T12: 0.0171 REMARK 3 T13: -0.0159 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.6886 L22: 1.0698 REMARK 3 L33: 4.8569 L12: 0.3998 REMARK 3 L13: -0.7607 L23: 0.2235 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.1311 S13: -0.0007 REMARK 3 S21: 0.0269 S22: 0.0694 S23: -0.0153 REMARK 3 S31: 0.0902 S32: 0.1214 S33: -0.1422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4P3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, TRIS, LISO4, NH4SO4, KCL, REMARK 280 DHAP, OXALOACETIC ACID, ANAEROBIC, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.51450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -3 -37.08 -36.58 REMARK 500 PRO A 163 -159.25 -76.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 81 SG REMARK 620 2 SF4 A 301 S1 116.4 REMARK 620 3 SF4 A 301 S2 106.9 106.9 REMARK 620 4 SF4 A 301 S3 117.8 105.4 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 168 SG REMARK 620 2 SF4 A 301 S2 106.3 REMARK 620 3 SF4 A 301 S3 119.0 106.2 REMARK 620 4 SF4 A 301 S4 113.3 107.4 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 254 SG REMARK 620 2 SF4 A 301 S1 115.1 REMARK 620 3 SF4 A 301 S3 120.1 103.9 REMARK 620 4 SF4 A 301 S4 107.8 103.5 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5UK A 302 OAB REMARK 620 2 SF4 A 301 S1 105.7 REMARK 620 3 SF4 A 301 S2 119.2 106.6 REMARK 620 4 SF4 A 301 S4 118.3 102.8 102.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5UK A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P3X RELATED DB: PDB DBREF 5F3D A 1 298 UNP Q9X1X7 NADA_THEMA 1 298 SEQADV 5F3D MET A -6 UNP Q9X1X7 INITIATING METHIONINE SEQADV 5F3D HIS A -5 UNP Q9X1X7 EXPRESSION TAG SEQADV 5F3D HIS A -4 UNP Q9X1X7 EXPRESSION TAG SEQADV 5F3D HIS A -3 UNP Q9X1X7 EXPRESSION TAG SEQADV 5F3D HIS A -2 UNP Q9X1X7 EXPRESSION TAG SEQADV 5F3D HIS A -1 UNP Q9X1X7 EXPRESSION TAG SEQADV 5F3D HIS A 0 UNP Q9X1X7 EXPRESSION TAG SEQADV 5F3D PHE A 107 UNP Q9X1X7 TYR 107 ENGINEERED MUTATION SEQADV 5F3D ARG A 219 UNP Q9X1X7 LYS 219 ENGINEERED MUTATION SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS MET VAL ASP GLU ILE LEU SEQRES 2 A 305 LYS LEU LYS LYS GLU LYS GLY TYR ILE ILE LEU ALA HIS SEQRES 3 A 305 ASN TYR GLN ILE PRO GLU LEU GLN ASP ILE ALA ASP PHE SEQRES 4 A 305 VAL GLY ASP SER LEU GLN LEU ALA ARG LYS ALA MET GLU SEQRES 5 A 305 LEU SER GLU LYS LYS ILE LEU PHE LEU GLY VAL ASP PHE SEQRES 6 A 305 MET ALA GLU LEU VAL LYS ILE LEU ASN PRO ASP LYS LYS SEQRES 7 A 305 VAL ILE VAL PRO ASP ARG SER ALA THR CYS PRO MET ALA SEQRES 8 A 305 ASN ARG LEU THR PRO GLU ILE ILE ARG GLU TYR ARG GLU SEQRES 9 A 305 LYS PHE PRO ASP ALA PRO VAL VAL LEU PHE VAL ASN SER SEQRES 10 A 305 THR SER GLU CYS LYS THR LEU ALA ASP VAL ILE CYS THR SEQRES 11 A 305 SER ALA ASN ALA VAL GLU VAL VAL LYS LYS LEU ASP SER SEQRES 12 A 305 SER VAL VAL ILE PHE GLY PRO ASP ARG ASN LEU GLY GLU SEQRES 13 A 305 TYR VAL ALA GLU LYS THR GLY LYS LYS VAL ILE THR ILE SEQRES 14 A 305 PRO GLU ASN GLY HIS CYS PRO VAL HIS GLN PHE ASN ALA SEQRES 15 A 305 GLU SER ILE ASP ALA VAL ARG LYS LYS TYR PRO ASP ALA SEQRES 16 A 305 LYS VAL ILE VAL HIS PRO GLU CYS PRO LYS PRO VAL ARG SEQRES 17 A 305 ASP LYS ALA ASP TYR VAL GLY SER THR GLY GLN MET GLU SEQRES 18 A 305 LYS ILE PRO GLU ARG ASP PRO SER ARG ILE PHE VAL ILE SEQRES 19 A 305 GLY THR GLU ILE GLY MET ILE HIS LYS LEU LYS LYS LYS SEQRES 20 A 305 PHE PRO ASP ARG GLU PHE VAL PRO LEU GLU MET ALA VAL SEQRES 21 A 305 CYS VAL ASN MET LYS LYS ASN THR LEU GLU ASN THR LEU SEQRES 22 A 305 HIS ALA LEU GLN THR GLU SER PHE GLU VAL ILE LEU PRO SEQRES 23 A 305 LYS GLU VAL ILE GLU LYS ALA LYS LYS PRO ILE LEU ARG SEQRES 24 A 305 MET PHE GLU LEU MET GLY HET SF4 A 301 8 HET 5UK A 302 14 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5UK 2-IMINO,3-CARBOXY,5-OXO,6-HYDROXY HEXANOIC ACID HETNAM SO4 SULFATE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 5UK C7 H9 N O6 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *236(H2 O) HELIX 1 AA1 HIS A -2 GLY A 13 1 16 HELIX 2 AA2 ILE A 23 ALA A 30 1 8 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 VAL A 56 ASN A 67 1 12 HELIX 5 AA5 MET A 83 LEU A 87 5 5 HELIX 6 AA6 THR A 88 PHE A 99 1 12 HELIX 7 AA7 THR A 111 THR A 116 1 6 HELIX 8 AA8 ASN A 126 LEU A 134 1 9 HELIX 9 AA9 ASP A 144 GLY A 156 1 13 HELIX 10 AB1 CYS A 168 GLN A 172 5 5 HELIX 11 AB2 ALA A 175 TYR A 185 1 11 HELIX 12 AB3 PRO A 197 LYS A 203 1 7 HELIX 13 AB4 SER A 209 GLU A 214 1 6 HELIX 14 AB5 LYS A 215 ARG A 219 5 5 HELIX 15 AB6 ILE A 231 PHE A 241 1 11 HELIX 16 AB7 ASN A 256 ASN A 260 5 5 HELIX 17 AB8 THR A 261 GLU A 272 1 12 HELIX 18 AB9 PRO A 279 LEU A 296 1 18 SHEET 1 AA1 4 PHE A 32 GLY A 34 0 SHEET 2 AA1 4 TYR A 14 HIS A 19 1 N ALA A 18 O PHE A 32 SHEET 3 AA1 4 LYS A 50 LEU A 54 1 O LEU A 54 N LEU A 17 SHEET 4 AA1 4 LYS A 71 ILE A 73 1 O LYS A 71 N ILE A 51 SHEET 1 AA2 4 VAL A 120 CYS A 122 0 SHEET 2 AA2 4 VAL A 104 PHE A 107 1 N LEU A 106 O VAL A 120 SHEET 3 AA2 4 VAL A 138 GLY A 142 1 O ILE A 140 N VAL A 105 SHEET 4 AA2 4 LYS A 158 THR A 161 1 O ILE A 160 N VAL A 139 SHEET 1 AA3 4 TYR A 206 VAL A 207 0 SHEET 2 AA3 4 LYS A 189 VAL A 192 1 N VAL A 192 O TYR A 206 SHEET 3 AA3 4 ILE A 224 GLY A 228 1 O GLY A 228 N ILE A 191 SHEET 4 AA3 4 GLU A 245 PRO A 248 1 O VAL A 247 N PHE A 225 LINK SG CYS A 81 FE4 SF4 A 301 1555 1555 2.30 LINK SG CYS A 168 FE1 SF4 A 301 1555 1555 2.32 LINK SG CYS A 254 FE2 SF4 A 301 1555 1555 2.34 LINK FE3 SF4 A 301 OAB 5UK A 302 1555 1555 2.05 CISPEP 1 GLY A 142 PRO A 143 0 3.33 CISPEP 2 ILE A 162 PRO A 163 0 -7.55 CISPEP 3 SER A 273 PHE A 274 0 1.60 SITE 1 AC1 8 CYS A 81 MET A 83 ASN A 109 CYS A 168 SITE 2 AC1 8 VAL A 170 GLU A 195 CYS A 254 5UK A 302 SITE 1 AC2 15 HIS A 19 TYR A 21 ASP A 35 SER A 36 SITE 2 AC2 15 MET A 59 PHE A 107 ASN A 109 THR A 123 SITE 3 AC2 15 SER A 124 HIS A 193 GLU A 195 THR A 210 SITE 4 AC2 15 SF4 A 301 HOH A 402 HOH A 419 SITE 1 AC3 1 LYS A 238 SITE 1 AC4 4 GLN A 38 ARG A 41 LYS A 215 HOH A 543 SITE 1 AC5 4 ARG A 292 LEU A 296 HOH A 420 HOH A 450 CRYST1 53.902 49.029 60.520 90.00 105.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018552 0.000000 0.005110 0.00000 SCALE2 0.000000 0.020396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017139 0.00000