HEADER ISOMERASE 03-DEC-15 5F3R TITLE STRUCTURE OF OXIDIZED UDP-GALACTOPYRANOSE MUTASE FROM MYCOBACTERIUM TITLE 2 SMEGMATIS IN COMPLEX WITH MAGNESIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GALACTOPYRANOSE MUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-GALACTOPYRANOSE MUTASE GLF; COMPND 5 EC: 5.4.99.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: GLF, MSMEG_6404, MSMEI_6236; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.WANGKANONT,L.L.KIESSLING,K.T.FOREST REVDAT 4 27-SEP-23 5F3R 1 LINK REVDAT 3 11-DEC-19 5F3R 1 REMARK REVDAT 2 20-SEP-17 5F3R 1 REMARK REVDAT 1 07-DEC-16 5F3R 0 JRNL AUTH K.WANGKANONT,L.L.KIESSLING,K.T.FOREST JRNL TITL STRUCTURAL DYNAMICS OF UDP-GALACTOPYRANOSE MUTASE FROM JRNL TITL 2 MYCOBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 30056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7039 - 4.5345 1.00 2861 152 0.1467 0.2281 REMARK 3 2 4.5345 - 3.5998 1.00 2714 142 0.1398 0.2065 REMARK 3 3 3.5998 - 3.1450 1.00 2698 142 0.1796 0.2288 REMARK 3 4 3.1450 - 2.8575 1.00 2644 139 0.1928 0.2392 REMARK 3 5 2.8575 - 2.6527 0.99 2621 138 0.2038 0.2797 REMARK 3 6 2.6527 - 2.4964 0.98 2590 137 0.2059 0.2614 REMARK 3 7 2.4964 - 2.3714 0.98 2573 136 0.2143 0.2581 REMARK 3 8 2.3714 - 2.2681 0.97 2544 134 0.2103 0.2810 REMARK 3 9 2.2681 - 2.1808 0.96 2509 129 0.2242 0.2880 REMARK 3 10 2.1808 - 2.1056 0.94 2454 127 0.2338 0.2821 REMARK 3 11 2.1056 - 2.0397 0.90 2350 122 0.2466 0.3449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3369 REMARK 3 ANGLE : 1.063 4585 REMARK 3 CHIRALITY : 0.044 471 REMARK 3 PLANARITY : 0.005 601 REMARK 3 DIHEDRAL : 14.088 1208 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 15:98) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3166 24.0837 12.1636 REMARK 3 T TENSOR REMARK 3 T11: 0.3528 T22: 0.5801 REMARK 3 T33: 0.4092 T12: 0.0957 REMARK 3 T13: -0.1419 T23: -0.0824 REMARK 3 L TENSOR REMARK 3 L11: 1.2238 L22: 1.7921 REMARK 3 L33: 2.1518 L12: -0.1036 REMARK 3 L13: 0.0916 L23: -0.2100 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: -0.0108 S13: 0.2544 REMARK 3 S21: -0.2365 S22: -0.0113 S23: 0.3171 REMARK 3 S31: -0.3126 S32: -0.9497 S33: 0.0453 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 99:199) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8393 7.2342 28.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.3133 T22: 0.4557 REMARK 3 T33: 0.3991 T12: -0.0708 REMARK 3 T13: -0.0208 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.6002 L22: 1.1809 REMARK 3 L33: 3.5734 L12: 0.1262 REMARK 3 L13: -0.8928 L23: -0.1734 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -0.2548 S13: -0.1121 REMARK 3 S21: -0.0105 S22: -0.1388 S23: -0.3122 REMARK 3 S31: -0.1524 S32: 0.6196 S33: 0.0600 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 200:325) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2347 17.3549 8.7852 REMARK 3 T TENSOR REMARK 3 T11: 0.2738 T22: 0.3697 REMARK 3 T33: 0.2718 T12: -0.0218 REMARK 3 T13: -0.1095 T23: -0.0969 REMARK 3 L TENSOR REMARK 3 L11: 1.4825 L22: 2.7826 REMARK 3 L33: 2.6911 L12: -0.0128 REMARK 3 L13: -0.0038 L23: -0.3588 REMARK 3 S TENSOR REMARK 3 S11: -0.1753 S12: 0.0718 S13: 0.0847 REMARK 3 S21: -0.4933 S22: 0.0023 S23: 0.1085 REMARK 3 S31: 0.0014 S32: -0.5121 S33: 0.1172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 326:405) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1263 33.1214 10.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.5234 T22: 0.3288 REMARK 3 T33: 0.4959 T12: 0.0215 REMARK 3 T13: -0.1736 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 1.9536 L22: 1.8758 REMARK 3 L33: 2.4066 L12: -1.1357 REMARK 3 L13: -0.0320 L23: 0.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: -0.0924 S13: 0.5654 REMARK 3 S21: -0.2405 S22: -0.0846 S23: -0.2125 REMARK 3 S31: -0.8464 S32: -0.1840 S33: 0.2187 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 42.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.40 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.40 REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5EQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 25 MM MGCL2, 18% PEG REMARK 280 3350, 20% GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.07550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.99450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.99450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.53775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.99450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.99450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.61325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.99450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.99450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.53775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.99450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.99450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.61325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.07550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 775 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 GLU A 406 REMARK 465 ASP A 407 REMARK 465 GLU A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 LYS A 411 REMARK 465 ALA A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 224 O HOH A 601 2.14 REMARK 500 NH1 ARG A 82 O HOH A 602 2.16 REMARK 500 O HOH A 767 O HOH A 789 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 112 -178.88 -68.23 REMARK 500 THR A 188 -74.31 -80.31 REMARK 500 TYR A 194 36.11 -97.52 REMARK 500 VAL A 392 -55.16 -126.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 798 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 330 OD1 REMARK 620 2 ASP A 330 OD1 0.0 REMARK 620 3 HOH A 618 O 87.2 87.2 REMARK 620 4 HOH A 618 O 97.2 97.2 90.2 REMARK 620 5 HOH A 727 O 86.0 86.0 87.6 176.0 REMARK 620 6 HOH A 727 O 90.7 90.7 177.7 91.1 91.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 504 DBREF 5F3R A 1 412 UNP A0R629 A0R629_MYCS2 1 412 SEQADV 5F3R HIS A 413 UNP A0R629 EXPRESSION TAG SEQADV 5F3R HIS A 414 UNP A0R629 EXPRESSION TAG SEQADV 5F3R HIS A 415 UNP A0R629 EXPRESSION TAG SEQADV 5F3R HIS A 416 UNP A0R629 EXPRESSION TAG SEQADV 5F3R HIS A 417 UNP A0R629 EXPRESSION TAG SEQADV 5F3R HIS A 418 UNP A0R629 EXPRESSION TAG SEQRES 1 A 418 MET THR SER ILE SER HIS PRO VAL ALA PRO SER GLN SER SEQRES 2 A 418 THR GLY ASN PHE ASP LEU PHE VAL VAL GLY SER GLY PHE SEQRES 3 A 418 PHE GLY LEU THR ILE ALA GLU ARG ALA ALA THR GLN LEU SEQRES 4 A 418 GLY LYS ARG VAL LEU VAL ILE GLU ARG ARG PRO HIS ILE SEQRES 5 A 418 GLY GLY ASN ALA TYR SER GLU PRO GLU PRO GLU THR GLY SEQRES 6 A 418 ILE GLU VAL HIS LYS TYR GLY ALA HIS LEU PHE HIS THR SEQRES 7 A 418 SER ASN LYS ARG VAL TRP ASP TYR VAL ARG GLN PHE THR SEQRES 8 A 418 ASP PHE THR GLY TYR GLN HIS ARG VAL PHE ALA MET HIS SEQRES 9 A 418 ASN GLY GLN ALA TYR GLN PHE PRO MET GLY LEU GLY LEU SEQRES 10 A 418 VAL SER GLN PHE PHE GLY ARG TYR PHE SER PRO ASP GLU SEQRES 11 A 418 ALA ARG ALA LEU ILE ALA GLU GLN ALA SER GLU ILE ASP SEQRES 12 A 418 THR LYS ASP ALA LYS ASN PHE GLU GLU LYS ALA ILE SER SEQRES 13 A 418 LEU VAL GLY ARG PRO LEU TYR GLU ALA PHE ILE LYS HIS SEQRES 14 A 418 TYR THR ALA LYS GLN TRP GLN THR ASP PRO LYS ASP LEU SEQRES 15 A 418 PRO ALA SER ASN ILE THR ARG LEU PRO VAL ARG TYR THR SEQRES 16 A 418 PHE ASP ASN ARG TYR PHE ASN ASP THR TYR GLU GLY LEU SEQRES 17 A 418 PRO VAL GLU GLY TYR THR LYS TRP LEU GLU ASN MET ALA SEQRES 18 A 418 ALA ASP GLU ARG ILE GLU VAL ARG LEU ASP THR ASP TRP SEQRES 19 A 418 PHE ASP VAL ARG ASP ASP LEU ARG ALA ALA ASN PRO ASP SEQRES 20 A 418 ALA PRO VAL VAL TYR THR GLY PRO LEU ASP ARG TYR PHE SEQRES 21 A 418 ASP TYR ALA GLU GLY ARG LEU GLY TRP ARG THR LEU ASP SEQRES 22 A 418 PHE GLU LEU GLU VAL LEU GLU THR GLY ASP PHE GLN GLY SEQRES 23 A 418 THR PRO VAL MET ASN TYR ASN ASP LEU ASP VAL PRO TYR SEQRES 24 A 418 THR ARG ILE HIS GLU PHE ARG HIS PHE HIS PRO GLU ARG SEQRES 25 A 418 THR TYR PRO THR ASP LYS THR VAL ILE MET ARG GLU TYR SEQRES 26 A 418 SER ARG PHE ALA ASP ASN ASP ASP GLU PRO TYR TYR PRO SEQRES 27 A 418 ILE ASN THR GLU ALA ASP ARG ALA VAL LEU ALA ALA TYR SEQRES 28 A 418 ARG ALA ARG ALA LYS ALA GLU THR ALA SER ALA LYS VAL SEQRES 29 A 418 LEU PHE GLY GLY ARG LEU GLY THR TYR GLN TYR LEU ASP SEQRES 30 A 418 MET HIS MET ALA ILE ALA SER ALA LEU SER MET PHE ASP SEQRES 31 A 418 ASN VAL LEU ALA PRO HIS LEU SER GLU GLY ALA SER LEU SEQRES 32 A 418 VAL THR GLU ASP GLU SER SER LYS ALA HIS HIS HIS HIS SEQRES 33 A 418 HIS HIS HET FAD A 501 53 HET MG A 502 1 HET DMS A 503 4 HET DMS A 504 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 MG MG 2+ FORMUL 4 DMS 2(C2 H6 O S) FORMUL 6 HOH *198(H2 O) HELIX 1 AA1 GLY A 25 GLY A 40 1 16 HELIX 2 AA2 GLY A 53 ALA A 56 5 4 HELIX 3 AA3 ASN A 80 ARG A 88 1 9 HELIX 4 AA4 GLY A 114 GLY A 123 1 10 HELIX 5 AA5 SER A 127 SER A 140 1 14 HELIX 6 AA6 GLU A 141 ILE A 142 5 2 HELIX 7 AA7 ASP A 143 ALA A 147 5 5 HELIX 8 AA8 ASN A 149 GLY A 159 1 11 HELIX 9 AA9 GLY A 159 ILE A 167 1 9 HELIX 10 AB1 ILE A 167 GLN A 176 1 10 HELIX 11 AB2 ASP A 178 LEU A 182 5 5 HELIX 12 AB3 PRO A 183 ILE A 187 5 5 HELIX 13 AB4 GLY A 212 ALA A 221 1 10 HELIX 14 AB5 ASP A 233 ASN A 245 1 13 HELIX 15 AB6 PRO A 255 PHE A 260 1 6 HELIX 16 AB7 ARG A 306 HIS A 309 5 4 HELIX 17 AB8 THR A 341 LYS A 363 1 23 HELIX 18 AB9 GLY A 367 TYR A 373 1 7 HELIX 19 AC1 ASP A 377 VAL A 392 1 16 HELIX 20 AC2 VAL A 392 GLY A 400 1 9 SHEET 1 AA1 5 ILE A 226 ARG A 229 0 SHEET 2 AA1 5 VAL A 43 ILE A 46 1 N VAL A 45 O GLU A 227 SHEET 3 AA1 5 LEU A 19 VAL A 22 1 N VAL A 21 O LEU A 44 SHEET 4 AA1 5 VAL A 250 TYR A 252 1 O VAL A 251 N VAL A 22 SHEET 5 AA1 5 VAL A 364 PHE A 366 1 O LEU A 365 N VAL A 250 SHEET 1 AA2 2 SER A 58 PRO A 60 0 SHEET 2 AA2 2 GLU A 67 HIS A 69 -1 O VAL A 68 N GLU A 59 SHEET 1 AA3 2 PHE A 76 THR A 78 0 SHEET 2 AA3 2 TYR A 205 GLY A 207 -1 O TYR A 205 N THR A 78 SHEET 1 AA4 7 GLN A 107 PHE A 111 0 SHEET 2 AA4 7 VAL A 100 HIS A 104 -1 N ALA A 102 O TYR A 109 SHEET 3 AA4 7 VAL A 289 TYR A 292 1 O ASN A 291 N MET A 103 SHEET 4 AA4 7 ARG A 301 GLU A 304 -1 O ILE A 302 N MET A 290 SHEET 5 AA4 7 THR A 319 PHE A 328 -1 O MET A 322 N HIS A 303 SHEET 6 AA4 7 TRP A 269 LEU A 279 -1 N THR A 271 O ARG A 327 SHEET 7 AA4 7 TYR A 337 PRO A 338 -1 O TYR A 337 N ARG A 270 LINK OD1 ASP A 330 MG MG A 502 1555 1555 2.06 LINK OD1 ASP A 330 MG MG A 502 1555 7555 2.08 LINK MG MG A 502 O HOH A 618 1555 1555 2.14 LINK MG MG A 502 O HOH A 618 1555 7555 2.07 LINK MG MG A 502 O HOH A 727 1555 1555 2.14 LINK MG MG A 502 O HOH A 727 1555 7555 2.07 CISPEP 1 PHE A 111 PRO A 112 0 -0.55 SITE 1 AC1 37 VAL A 22 GLY A 23 GLY A 25 PHE A 26 SITE 2 AC1 37 PHE A 27 ILE A 46 GLU A 47 ARG A 48 SITE 3 AC1 37 ARG A 49 GLY A 54 ASN A 55 TYR A 71 SITE 4 AC1 37 ALA A 73 HIS A 74 LEU A 75 THR A 232 SITE 5 AC1 37 ASP A 233 TRP A 234 PHE A 235 GLY A 254 SITE 6 AC1 37 PRO A 255 ARG A 258 LEU A 272 TYR A 336 SITE 7 AC1 37 GLY A 368 ARG A 369 TYR A 375 LEU A 376 SITE 8 AC1 37 ASP A 377 MET A 378 ALA A 381 HOH A 609 SITE 9 AC1 37 HOH A 649 HOH A 653 HOH A 697 HOH A 744 SITE 10 AC1 37 HOH A 756 SITE 1 AC2 3 ASP A 330 HOH A 618 HOH A 727 SITE 1 AC3 1 TRP A 175 SITE 1 AC4 2 PHE A 284 ARG A 323 CRYST1 85.989 85.989 126.151 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007927 0.00000