HEADER VIRAL PROTEIN 03-DEC-15 5F4M TITLE PROTRUDING DOMAIN OF GII.17 NOROVIRUS KAWASAKI323 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS 13-BH-1/2013/GII.17; SOURCE 3 ORGANISM_TAXID: 1508693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 3 10-JAN-24 5F4M 1 REMARK REVDAT 2 24-FEB-16 5F4M 1 JRNL REVDAT 1 13-JAN-16 5F4M 0 JRNL AUTH B.K.SINGH,A.KOROMYSLOVA,L.HEFELE,C.GURTH,G.S.HANSMAN JRNL TITL STRUCTURAL EVOLUTION OF THE EMERGING 2014-2015 GII.17 JRNL TITL 2 NOROVIRUSES. JRNL REF J.VIROL. V. 90 2710 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26699640 JRNL DOI 10.1128/JVI.03119-15 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6072 - 6.1024 1.00 2806 149 0.1547 0.1772 REMARK 3 2 6.1024 - 4.8680 1.00 2680 141 0.1602 0.1660 REMARK 3 3 4.8680 - 4.2599 1.00 2657 140 0.1290 0.1579 REMARK 3 4 4.2599 - 3.8737 1.00 2612 136 0.1279 0.1572 REMARK 3 5 3.8737 - 3.5979 1.00 2611 138 0.1352 0.1433 REMARK 3 6 3.5979 - 3.3869 1.00 2603 136 0.1480 0.1906 REMARK 3 7 3.3869 - 3.2180 1.00 2602 137 0.1563 0.1744 REMARK 3 8 3.2180 - 3.0785 1.00 2576 136 0.1573 0.1899 REMARK 3 9 3.0785 - 2.9604 1.00 2554 134 0.1656 0.1908 REMARK 3 10 2.9604 - 2.8586 1.00 2609 138 0.1709 0.2090 REMARK 3 11 2.8586 - 2.7694 1.00 2559 135 0.1748 0.1962 REMARK 3 12 2.7694 - 2.6905 1.00 2581 135 0.1743 0.2254 REMARK 3 13 2.6905 - 2.6198 1.00 2576 135 0.1794 0.2180 REMARK 3 14 2.6198 - 2.5560 1.00 2557 135 0.1815 0.2149 REMARK 3 15 2.5560 - 2.4980 1.00 2561 135 0.1912 0.2523 REMARK 3 16 2.4980 - 2.4450 1.00 2550 133 0.1947 0.2255 REMARK 3 17 2.4450 - 2.3962 1.00 2561 135 0.2023 0.2181 REMARK 3 18 2.3962 - 2.3510 1.00 2554 134 0.1963 0.2093 REMARK 3 19 2.3510 - 2.3091 1.00 2564 135 0.2024 0.2668 REMARK 3 20 2.3091 - 2.2700 1.00 2547 135 0.2204 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4942 REMARK 3 ANGLE : 1.081 6755 REMARK 3 CHIRALITY : 0.047 725 REMARK 3 PLANARITY : 0.006 911 REMARK 3 DIHEDRAL : 14.018 1783 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.4578 -1.7091 -9.1965 REMARK 3 T TENSOR REMARK 3 T11: 0.3838 T22: 0.2216 REMARK 3 T33: 0.3895 T12: -0.0007 REMARK 3 T13: 0.1317 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.5389 L22: 1.2147 REMARK 3 L33: 1.1426 L12: 0.1670 REMARK 3 L13: 0.5130 L23: -0.7540 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.1454 S13: 0.1151 REMARK 3 S21: 0.4655 S22: 0.1148 S23: 0.5074 REMARK 3 S31: -0.2339 S32: 0.0082 S33: -0.1880 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4922 -6.4416 -23.2688 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.2400 REMARK 3 T33: 0.5706 T12: -0.0504 REMARK 3 T13: -0.0466 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 2.8199 L22: 2.8505 REMARK 3 L33: 3.8835 L12: -0.8188 REMARK 3 L13: 1.1864 L23: -0.7474 REMARK 3 S TENSOR REMARK 3 S11: -0.1881 S12: 0.0734 S13: -0.0466 REMARK 3 S21: -0.1825 S22: 0.0962 S23: 0.8852 REMARK 3 S31: 0.1765 S32: -0.3762 S33: -0.1039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.7893 -0.8376 -32.4458 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.3351 REMARK 3 T33: 0.7224 T12: -0.0266 REMARK 3 T13: -0.2035 T23: 0.1055 REMARK 3 L TENSOR REMARK 3 L11: 1.2500 L22: 1.5842 REMARK 3 L33: 1.8444 L12: -0.2814 REMARK 3 L13: -0.5230 L23: 0.0725 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.2461 S13: 0.1136 REMARK 3 S21: -0.5095 S22: 0.1810 S23: 0.9411 REMARK 3 S31: 0.0342 S32: -0.3730 S33: -0.0816 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6269 1.7006 -37.8857 REMARK 3 T TENSOR REMARK 3 T11: 0.6014 T22: 0.3407 REMARK 3 T33: 0.4995 T12: -0.0165 REMARK 3 T13: -0.2486 T23: 0.1198 REMARK 3 L TENSOR REMARK 3 L11: 1.6466 L22: 0.4478 REMARK 3 L33: 2.7407 L12: 0.6072 REMARK 3 L13: 1.0212 L23: 1.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.5508 S13: 0.1364 REMARK 3 S21: -0.9089 S22: 0.3135 S23: 0.7350 REMARK 3 S31: -0.3478 S32: 0.0529 S33: 0.2429 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7097 4.3960 -13.9637 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.2360 REMARK 3 T33: 0.4964 T12: -0.0003 REMARK 3 T13: 0.1286 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.9448 L22: 1.8251 REMARK 3 L33: 0.5289 L12: 0.2156 REMARK 3 L13: -0.3695 L23: -0.0522 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.0717 S13: 0.1986 REMARK 3 S21: 0.4655 S22: 0.0806 S23: 0.8825 REMARK 3 S31: -0.2187 S32: -0.1187 S33: -0.0874 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 463 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7230 -1.9115 1.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.6804 T22: 0.3124 REMARK 3 T33: 0.3278 T12: -0.0259 REMARK 3 T13: 0.1491 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3763 L22: 2.7200 REMARK 3 L33: 2.6531 L12: -0.0310 REMARK 3 L13: 0.5573 L23: -0.0776 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: -0.1361 S13: -0.0110 REMARK 3 S21: 1.0759 S22: 0.0172 S23: 0.2567 REMARK 3 S31: -0.2650 S32: 0.1840 S33: -0.0521 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8027 -14.3588 -28.0449 REMARK 3 T TENSOR REMARK 3 T11: 0.3416 T22: 0.2679 REMARK 3 T33: 0.2283 T12: -0.0057 REMARK 3 T13: 0.0282 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8984 L22: 3.4375 REMARK 3 L33: 0.1958 L12: 0.8538 REMARK 3 L13: -0.2833 L23: -0.8925 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: 0.0822 S13: -0.0910 REMARK 3 S21: -0.3481 S22: 0.0532 S23: -0.0766 REMARK 3 S31: 0.0994 S32: 0.0834 S33: 0.0210 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1102 0.6025 -31.5156 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.2300 REMARK 3 T33: 0.1996 T12: -0.0228 REMARK 3 T13: 0.0515 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.7018 L22: 3.4900 REMARK 3 L33: 1.2406 L12: -0.3331 REMARK 3 L13: -0.5874 L23: 0.2458 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.0919 S13: 0.0587 REMARK 3 S21: -0.3624 S22: -0.0335 S23: -0.3140 REMARK 3 S31: -0.0238 S32: 0.0690 S33: -0.0035 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 372 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5493 5.2730 -35.5987 REMARK 3 T TENSOR REMARK 3 T11: 0.3672 T22: 0.2362 REMARK 3 T33: 0.2549 T12: 0.0152 REMARK 3 T13: -0.0009 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 2.7954 L22: 4.7076 REMARK 3 L33: 2.4764 L12: 2.3453 REMARK 3 L13: 0.7858 L23: 0.2265 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: 0.2673 S13: 0.3356 REMARK 3 S21: -0.7784 S22: 0.0809 S23: 0.3338 REMARK 3 S31: -0.0642 S32: 0.0472 S33: 0.0269 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 392 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9167 -25.3835 -28.5008 REMARK 3 T TENSOR REMARK 3 T11: 0.3291 T22: 0.1989 REMARK 3 T33: 0.2244 T12: 0.0032 REMARK 3 T13: 0.0106 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.6593 L22: 3.4144 REMARK 3 L33: 0.6623 L12: 0.5384 REMARK 3 L13: -0.1163 L23: -0.8335 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.1056 S13: -0.1059 REMARK 3 S21: -0.4946 S22: 0.0699 S23: 0.0095 REMARK 3 S31: 0.1486 S32: -0.0317 S33: -0.0168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2806 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 19.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: HOMOLOGY MODEL BASED ON 4OOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, PEG8000, TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.75500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.45000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.75500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.45000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.15000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 414 CG SD CE REMARK 470 ASN B 376 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 298 OG SER A 359 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 260 49.33 -144.51 REMARK 500 SER A 439 46.52 -103.45 REMARK 500 VAL A 519 -156.42 -130.66 REMARK 500 GLN B 260 49.39 -144.29 REMARK 500 ASP B 393 78.08 -101.32 REMARK 500 SER B 439 43.07 -106.32 REMARK 500 VAL B 519 -148.90 -133.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F4J RELATED DB: PDB REMARK 900 PROTRUDING DOMAIN OF GII.17 NOROVIRUS SAITAMA/T87 DBREF1 5F4M A 225 528 UNP A0A0A7CJV4_9CALI DBREF2 5F4M A A0A0A7CJV4 225 528 DBREF1 5F4M B 225 528 UNP A0A0A7CJV4_9CALI DBREF2 5F4M B A0A0A7CJV4 225 528 SEQADV 5F4M GLY A 221 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M PRO A 222 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M GLY A 223 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M SER A 224 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M GLY B 221 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M PRO B 222 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M GLY B 223 UNP A0A0A7CJV EXPRESSION TAG SEQADV 5F4M SER B 224 UNP A0A0A7CJV EXPRESSION TAG SEQRES 1 A 308 GLY PRO GLY SER LYS PRO PHE SER LEU PRO ILE LEU THR SEQRES 2 A 308 LEU SER GLU LEU THR ASN SER ARG PHE PRO VAL PRO ILE SEQRES 3 A 308 ASP SER LEU PHE THR ALA GLN ASN ASN VAL LEU GLN VAL SEQRES 4 A 308 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 A 308 GLN GLY THR THR GLN LEU LEU PRO SER GLY ILE CYS ALA SEQRES 6 A 308 PHE ARG GLY ARG VAL THR ALA GLU THR ASP HIS ARG ASP SEQRES 7 A 308 LYS TRP HIS MET GLN LEU GLN ASN LEU ASN GLY THR THR SEQRES 8 A 308 TYR ASP PRO THR ASP ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 308 PRO ASP PHE LYS GLY VAL VAL PHE GLY VAL ALA SER GLN SEQRES 10 A 308 ARG ASN VAL GLY ASN ASP ALA PRO GLY SER THR ARG ALA SEQRES 11 A 308 HIS GLU ALA VAL ILE SER THR TYR SER PRO GLN PHE VAL SEQRES 12 A 308 PRO LYS LEU GLY SER VAL ASN PHE ARG SER ASN ASP ASN SEQRES 13 A 308 ASP PHE GLN LEU GLN PRO THR LYS PHE THR PRO VAL GLY SEQRES 14 A 308 ILE ASN ASP ASP GLY ASP HIS PRO PHE ARG GLN TRP GLU SEQRES 15 A 308 LEU PRO ASP TYR SER GLY LEU LEU THR LEU ASN MET ASN SEQRES 16 A 308 LEU ALA PRO PRO VAL ALA PRO ASN PHE PRO GLY GLU GLN SEQRES 17 A 308 LEU LEU PHE PHE ARG SER PHE VAL PRO CYS SER GLY GLY SEQRES 18 A 308 TYR ASN GLN GLY ILE VAL ASP CYS LEU ILE PRO GLN GLU SEQRES 19 A 308 TRP ILE GLN HIS PHE TYR GLN GLU SER ALA PRO SER GLN SEQRES 20 A 308 SER ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP THR SEQRES 21 A 308 GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER GLY SEQRES 22 A 308 TYR ILE THR VAL ALA HIS SER GLY ASP TYR PRO LEU VAL SEQRES 23 A 308 VAL PRO ALA ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 A 308 ASN GLN PHE TYR SER LEU ALA PRO MET SEQRES 1 B 308 GLY PRO GLY SER LYS PRO PHE SER LEU PRO ILE LEU THR SEQRES 2 B 308 LEU SER GLU LEU THR ASN SER ARG PHE PRO VAL PRO ILE SEQRES 3 B 308 ASP SER LEU PHE THR ALA GLN ASN ASN VAL LEU GLN VAL SEQRES 4 B 308 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 B 308 GLN GLY THR THR GLN LEU LEU PRO SER GLY ILE CYS ALA SEQRES 6 B 308 PHE ARG GLY ARG VAL THR ALA GLU THR ASP HIS ARG ASP SEQRES 7 B 308 LYS TRP HIS MET GLN LEU GLN ASN LEU ASN GLY THR THR SEQRES 8 B 308 TYR ASP PRO THR ASP ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 308 PRO ASP PHE LYS GLY VAL VAL PHE GLY VAL ALA SER GLN SEQRES 10 B 308 ARG ASN VAL GLY ASN ASP ALA PRO GLY SER THR ARG ALA SEQRES 11 B 308 HIS GLU ALA VAL ILE SER THR TYR SER PRO GLN PHE VAL SEQRES 12 B 308 PRO LYS LEU GLY SER VAL ASN PHE ARG SER ASN ASP ASN SEQRES 13 B 308 ASP PHE GLN LEU GLN PRO THR LYS PHE THR PRO VAL GLY SEQRES 14 B 308 ILE ASN ASP ASP GLY ASP HIS PRO PHE ARG GLN TRP GLU SEQRES 15 B 308 LEU PRO ASP TYR SER GLY LEU LEU THR LEU ASN MET ASN SEQRES 16 B 308 LEU ALA PRO PRO VAL ALA PRO ASN PHE PRO GLY GLU GLN SEQRES 17 B 308 LEU LEU PHE PHE ARG SER PHE VAL PRO CYS SER GLY GLY SEQRES 18 B 308 TYR ASN GLN GLY ILE VAL ASP CYS LEU ILE PRO GLN GLU SEQRES 19 B 308 TRP ILE GLN HIS PHE TYR GLN GLU SER ALA PRO SER GLN SEQRES 20 B 308 SER ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP THR SEQRES 21 B 308 GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER GLY SEQRES 22 B 308 TYR ILE THR VAL ALA HIS SER GLY ASP TYR PRO LEU VAL SEQRES 23 B 308 VAL PRO ALA ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 B 308 ASN GLN PHE TYR SER LEU ALA PRO MET HET EDO A 601 4 HET EDO B 601 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *344(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 VAL A 363 LEU A 366 5 4 HELIX 4 AA4 PRO A 452 SER A 463 1 12 HELIX 5 AA5 THR B 233 LEU B 237 5 5 HELIX 6 AA6 LEU B 279 ILE B 283 5 5 HELIX 7 AA7 VAL B 363 LEU B 366 5 4 HELIX 8 AA8 PRO B 452 SER B 463 1 12 SHEET 1 AA1 4 ILE A 446 CYS A 449 0 SHEET 2 AA1 4 GLU A 427 PHE A 435 -1 N PHE A 432 O CYS A 449 SHEET 3 AA1 4 SER A 248 THR A 251 -1 N PHE A 250 O PHE A 431 SHEET 4 AA1 4 TYR A 503 PRO A 504 -1 O TYR A 503 N THR A 251 SHEET 1 AA2 6 ILE A 446 CYS A 449 0 SHEET 2 AA2 6 GLU A 427 PHE A 435 -1 N PHE A 432 O CYS A 449 SHEET 3 AA2 6 TYR A 494 ALA A 498 -1 O VAL A 497 N GLN A 428 SHEET 4 AA2 6 THR A 483 HIS A 490 -1 N HIS A 490 O TYR A 494 SHEET 5 AA2 6 VAL A 470 VAL A 476 -1 N ALA A 471 O LEU A 489 SHEET 6 AA2 6 TYR A 512 VAL A 519 -1 O SER A 517 N LEU A 472 SHEET 1 AA3 6 THR A 348 SER A 356 0 SHEET 2 AA3 6 VAL A 330 ARG A 338 -1 N GLN A 337 O ARG A 349 SHEET 3 AA3 6 PRO A 382 ASN A 391 -1 O VAL A 388 N PHE A 332 SHEET 4 AA3 6 PHE A 286 GLU A 293 -1 N GLY A 288 O THR A 383 SHEET 5 AA3 6 TRP A 300 GLN A 305 -1 O GLN A 305 N ARG A 287 SHEET 6 AA3 6 SER A 368 PHE A 371 -1 O VAL A 369 N MET A 302 SHEET 1 AA4 4 ILE B 446 CYS B 449 0 SHEET 2 AA4 4 GLU B 427 PHE B 435 -1 N PHE B 432 O CYS B 449 SHEET 3 AA4 4 SER B 248 THR B 251 -1 N PHE B 250 O PHE B 431 SHEET 4 AA4 4 TYR B 503 PRO B 504 -1 O TYR B 503 N THR B 251 SHEET 1 AA5 6 ILE B 446 CYS B 449 0 SHEET 2 AA5 6 GLU B 427 PHE B 435 -1 N PHE B 432 O CYS B 449 SHEET 3 AA5 6 TYR B 494 ALA B 498 -1 O VAL B 497 N GLN B 428 SHEET 4 AA5 6 THR B 483 HIS B 490 -1 N HIS B 490 O TYR B 494 SHEET 5 AA5 6 VAL B 470 VAL B 476 -1 N ALA B 471 O LEU B 489 SHEET 6 AA5 6 TYR B 512 VAL B 519 -1 O SER B 517 N LEU B 472 SHEET 1 AA6 6 THR B 348 SER B 356 0 SHEET 2 AA6 6 VAL B 330 ARG B 338 -1 N VAL B 331 O ILE B 355 SHEET 3 AA6 6 PRO B 382 ASN B 391 -1 O LYS B 384 N SER B 336 SHEET 4 AA6 6 PHE B 286 GLU B 293 -1 N GLY B 288 O THR B 383 SHEET 5 AA6 6 TRP B 300 GLN B 305 -1 O GLN B 305 N ARG B 287 SHEET 6 AA6 6 SER B 368 PHE B 371 -1 O VAL B 369 N MET B 302 SITE 1 AC1 8 GLN A 277 ASN A 306 LEU A 307 ASN A 308 SITE 2 AC1 8 LEU A 322 HOH A 735 HOH A 758 HOH A 773 SITE 1 AC2 7 GLN B 277 ASN B 306 LEU B 307 ASN B 308 SITE 2 AC2 7 HOH B 739 HOH B 808 HOH B 849 CRYST1 121.510 121.510 156.600 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006386 0.00000