data_5F4T # _entry.id 5F4T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5F4T pdb_00005f4t 10.2210/pdb5f4t/pdb WWPDB D_1000216017 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5F4E unspecified PDB . 5F4Q unspecified PDB . 5F4V unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5F4T _pdbx_database_status.recvd_initial_deposition_date 2015-12-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aydin, H.' 1 'Sultana, A.' 2 'Lee, J.E.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 534 _citation.language ? _citation.page_first 562 _citation.page_last 565 _citation.title 'Molecular architecture of the human sperm IZUMO1 and egg JUNO fertilization complex.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature18595 _citation.pdbx_database_id_PubMed 27309818 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aydin, H.' 1 ? primary 'Sultana, A.' 2 ? primary 'Li, S.' 3 ? primary 'Thavalingam, A.' 4 ? primary 'Lee, J.E.' 5 ? # _cell.entry_id 5F4T _cell.length_a 126.039 _cell.length_b 126.039 _cell.length_c 60.895 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F4T _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Izumo sperm-egg fusion protein 1' 27181.240 1 ? ? 'UNP residues 22-254' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 water nat water 18.015 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Oocyte binding/fusion factor,OBF,Sperm-specific protein izumo' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CVICDPSVVLALKSLEKDYLPGHLDAKHHKAMMERVENAVKDFQELSLNEDAYMGVVDEATLQKGSWSLLKDLKRITDSD VKGDLFVKELFWMLHLQKETFATYVARFQKEAYCPNKCGVMLQTLIWCKNCKKEVHACRKSYDCGERNVEVPQMEDMILD CELNWHQASEGLTDYSFYRVWGNNTETLVSKGKEATLTKPMVGPEDAGSYRCELGSVNSSPATIINFHVTVLPGRVLPR ; _entity_poly.pdbx_seq_one_letter_code_can ;CVICDPSVVLALKSLEKDYLPGHLDAKHHKAMMERVENAVKDFQELSLNEDAYMGVVDEATLQKGSWSLLKDLKRITDSD VKGDLFVKELFWMLHLQKETFATYVARFQKEAYCPNKCGVMLQTLIWCKNCKKEVHACRKSYDCGERNVEVPQMEDMILD CELNWHQASEGLTDYSFYRVWGNNTETLVSKGKEATLTKPMVGPEDAGSYRCELGSVNSSPATIINFHVTVLPGRVLPR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 VAL n 1 3 ILE n 1 4 CYS n 1 5 ASP n 1 6 PRO n 1 7 SER n 1 8 VAL n 1 9 VAL n 1 10 LEU n 1 11 ALA n 1 12 LEU n 1 13 LYS n 1 14 SER n 1 15 LEU n 1 16 GLU n 1 17 LYS n 1 18 ASP n 1 19 TYR n 1 20 LEU n 1 21 PRO n 1 22 GLY n 1 23 HIS n 1 24 LEU n 1 25 ASP n 1 26 ALA n 1 27 LYS n 1 28 HIS n 1 29 HIS n 1 30 LYS n 1 31 ALA n 1 32 MET n 1 33 MET n 1 34 GLU n 1 35 ARG n 1 36 VAL n 1 37 GLU n 1 38 ASN n 1 39 ALA n 1 40 VAL n 1 41 LYS n 1 42 ASP n 1 43 PHE n 1 44 GLN n 1 45 GLU n 1 46 LEU n 1 47 SER n 1 48 LEU n 1 49 ASN n 1 50 GLU n 1 51 ASP n 1 52 ALA n 1 53 TYR n 1 54 MET n 1 55 GLY n 1 56 VAL n 1 57 VAL n 1 58 ASP n 1 59 GLU n 1 60 ALA n 1 61 THR n 1 62 LEU n 1 63 GLN n 1 64 LYS n 1 65 GLY n 1 66 SER n 1 67 TRP n 1 68 SER n 1 69 LEU n 1 70 LEU n 1 71 LYS n 1 72 ASP n 1 73 LEU n 1 74 LYS n 1 75 ARG n 1 76 ILE n 1 77 THR n 1 78 ASP n 1 79 SER n 1 80 ASP n 1 81 VAL n 1 82 LYS n 1 83 GLY n 1 84 ASP n 1 85 LEU n 1 86 PHE n 1 87 VAL n 1 88 LYS n 1 89 GLU n 1 90 LEU n 1 91 PHE n 1 92 TRP n 1 93 MET n 1 94 LEU n 1 95 HIS n 1 96 LEU n 1 97 GLN n 1 98 LYS n 1 99 GLU n 1 100 THR n 1 101 PHE n 1 102 ALA n 1 103 THR n 1 104 TYR n 1 105 VAL n 1 106 ALA n 1 107 ARG n 1 108 PHE n 1 109 GLN n 1 110 LYS n 1 111 GLU n 1 112 ALA n 1 113 TYR n 1 114 CYS n 1 115 PRO n 1 116 ASN n 1 117 LYS n 1 118 CYS n 1 119 GLY n 1 120 VAL n 1 121 MET n 1 122 LEU n 1 123 GLN n 1 124 THR n 1 125 LEU n 1 126 ILE n 1 127 TRP n 1 128 CYS n 1 129 LYS n 1 130 ASN n 1 131 CYS n 1 132 LYS n 1 133 LYS n 1 134 GLU n 1 135 VAL n 1 136 HIS n 1 137 ALA n 1 138 CYS n 1 139 ARG n 1 140 LYS n 1 141 SER n 1 142 TYR n 1 143 ASP n 1 144 CYS n 1 145 GLY n 1 146 GLU n 1 147 ARG n 1 148 ASN n 1 149 VAL n 1 150 GLU n 1 151 VAL n 1 152 PRO n 1 153 GLN n 1 154 MET n 1 155 GLU n 1 156 ASP n 1 157 MET n 1 158 ILE n 1 159 LEU n 1 160 ASP n 1 161 CYS n 1 162 GLU n 1 163 LEU n 1 164 ASN n 1 165 TRP n 1 166 HIS n 1 167 GLN n 1 168 ALA n 1 169 SER n 1 170 GLU n 1 171 GLY n 1 172 LEU n 1 173 THR n 1 174 ASP n 1 175 TYR n 1 176 SER n 1 177 PHE n 1 178 TYR n 1 179 ARG n 1 180 VAL n 1 181 TRP n 1 182 GLY n 1 183 ASN n 1 184 ASN n 1 185 THR n 1 186 GLU n 1 187 THR n 1 188 LEU n 1 189 VAL n 1 190 SER n 1 191 LYS n 1 192 GLY n 1 193 LYS n 1 194 GLU n 1 195 ALA n 1 196 THR n 1 197 LEU n 1 198 THR n 1 199 LYS n 1 200 PRO n 1 201 MET n 1 202 VAL n 1 203 GLY n 1 204 PRO n 1 205 GLU n 1 206 ASP n 1 207 ALA n 1 208 GLY n 1 209 SER n 1 210 TYR n 1 211 ARG n 1 212 CYS n 1 213 GLU n 1 214 LEU n 1 215 GLY n 1 216 SER n 1 217 VAL n 1 218 ASN n 1 219 SER n 1 220 SER n 1 221 PRO n 1 222 ALA n 1 223 THR n 1 224 ILE n 1 225 ILE n 1 226 ASN n 1 227 PHE n 1 228 HIS n 1 229 VAL n 1 230 THR n 1 231 VAL n 1 232 LEU n 1 233 PRO n 1 234 GLY n 1 235 ARG n 1 236 VAL n 1 237 LEU n 1 238 PRO n 1 239 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 239 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene IZUMO1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fruit fly' _entity_src_gen.pdbx_host_org_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7227 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.db_code IZUM1_HUMAN _struct_ref.db_name UNP _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession Q8IYV9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ;CVICDPSVVLALKSLEKDYLPGHLDAKHHKAMMERVENAVKDFQELSLNEDAYMGVVDEATLQKGSWSLLKDLKRITDSD VKGDLFVKELFWMLHLQKETFATYVARFQKEAYCPNKCGVMLQTLIWCKNCKKEVHACRKSYDCGERNVEVPQMEDMILD CELNWHQASEGLTDYSFYRVWGNNTETLVSKGKEATLTKPMVGPEDAGSYRCELGSVNSSPATIINFHVTVLP ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_align_end ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5F4T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 233 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IYV9 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 254 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 254 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5F4T GLY A 234 ? UNP Q8IYV9 ? ? 'expression tag' 255 1 1 5F4T ARG A 235 ? UNP Q8IYV9 ? ? 'expression tag' 256 2 1 5F4T VAL A 236 ? UNP Q8IYV9 ? ? 'expression tag' 257 3 1 5F4T LEU A 237 ? UNP Q8IYV9 ? ? 'expression tag' 258 4 1 5F4T PRO A 238 ? UNP Q8IYV9 ? ? 'expression tag' 259 5 1 5F4T ARG A 239 ? UNP Q8IYV9 ? ? 'expression tag' 260 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5F4T _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.49 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.07 M sodium acetate (pH 4.6), 5.6% (w/v) PEG 4000 and 30% (v/v) glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-04-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate 37.5 _reflns.entry_id 5F4T _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.080 _reflns.d_resolution_low 63.02 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6484 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.900 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.080 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 18861 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 3.080 3.300 ? 3.100 2981 ? ? 1102 ? 91.300 ? ? ? ? 0.474 ? ? ? ? ? ? ? ? 2.700 ? ? ? ? ? 0.343 0 1 1 0.774 ? 8.720 40.640 ? 15.900 831 ? ? 285 ? 96.000 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 2.900 ? ? ? ? ? 0.036 0 2 1 0.994 ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5F4T _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6483 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.01 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.642 _refine.ls_d_res_high 3.083 _refine.ls_percent_reflns_obs 97.36 _refine.ls_R_factor_obs 0.2209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2194 _refine.ls_R_factor_R_free 0.2484 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.17 _refine.ls_number_reflns_R_free 335 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 5F4E _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.40 _refine.pdbx_overall_phase_error 28.81 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1728 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 3.083 _refine_hist.d_res_low 40.642 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1791 'X-RAY DIFFRACTION' ? f_angle_d 0.938 ? ? 2440 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.393 ? ? 604 'X-RAY DIFFRACTION' ? f_chiral_restr 0.038 ? ? 287 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 311 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 3.0829 3.8837 3058 0.2727 97.00 0.3303 . . 162 . . 'X-RAY DIFFRACTION' . 3.8837 40.6458 3090 0.1962 98.00 0.2140 . . 173 . . # _struct.entry_id 5F4T _struct.title 'Crystal structure of the human sperm Izumo1 residues 22-254' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5F4T _struct_keywords.text 'glycoprotein, membrane-bound, cysteine-rich, adhesion, fusion, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 1 ? CYS A 4 ? CYS A 22 CYS A 25 5 ? 4 HELX_P HELX_P2 AA2 ASP A 5 ? TYR A 19 ? ASP A 26 TYR A 40 1 ? 15 HELX_P HELX_P3 AA3 TYR A 19 ? LEU A 24 ? TYR A 40 LEU A 45 1 ? 6 HELX_P HELX_P4 AA4 ASP A 25 ? HIS A 28 ? ASP A 46 HIS A 49 5 ? 4 HELX_P HELX_P5 AA5 HIS A 29 ? LYS A 41 ? HIS A 50 LYS A 62 1 ? 13 HELX_P HELX_P6 AA6 ASP A 58 ? ASP A 80 ? ASP A 79 ASP A 101 1 ? 23 HELX_P HELX_P7 AA7 LEU A 85 ? ALA A 112 ? LEU A 106 ALA A 133 1 ? 28 HELX_P HELX_P8 AA8 TRP A 165 ? SER A 169 ? TRP A 186 SER A 190 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 128 SG ? ? A CYS 22 A CYS 149 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 25 A CYS 152 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 114 SG ? ? ? 1_555 A CYS 138 SG ? ? A CYS 135 A CYS 159 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 118 SG ? ? ? 1_555 A CYS 144 SG ? ? A CYS 139 A CYS 165 1_555 ? ? ? ? ? ? ? 2.057 ? ? disulf5 disulf ? ? A CYS 161 SG ? ? ? 1_555 A CYS 212 SG ? ? A CYS 182 A CYS 233 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 183 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 204 A NAG 301 1_555 ? ? ? ? ? ? ? 1.539 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 56 ? VAL A 57 ? VAL A 77 VAL A 78 AA1 2 VAL A 120 ? TRP A 127 ? VAL A 141 TRP A 148 AA1 3 LYS A 132 ? ARG A 139 ? LYS A 153 ARG A 160 AA2 1 GLY A 145 ? PRO A 152 ? GLY A 166 PRO A 173 AA2 2 SER A 219 ? LEU A 232 ? SER A 240 LEU A 253 AA2 3 GLY A 208 ? SER A 216 ? GLY A 229 SER A 237 AA2 4 LEU A 172 ? VAL A 180 ? LEU A 193 VAL A 201 AA2 5 GLU A 186 ? GLY A 192 ? GLU A 207 GLY A 213 AA3 1 MET A 157 ? ASP A 160 ? MET A 178 ASP A 181 AA3 2 THR A 196 ? LYS A 199 ? THR A 217 LYS A 220 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 57 ? N VAL A 78 O ILE A 126 ? O ILE A 147 AA1 2 3 N LEU A 125 ? N LEU A 146 O GLU A 134 ? O GLU A 155 AA2 1 2 N ARG A 147 ? N ARG A 168 O ASN A 226 ? O ASN A 247 AA2 2 3 O THR A 223 ? O THR A 244 N LEU A 214 ? N LEU A 235 AA2 3 4 O GLY A 215 ? O GLY A 236 N ASP A 174 ? N ASP A 195 AA2 4 5 N PHE A 177 ? N PHE A 198 O VAL A 189 ? O VAL A 210 AA3 1 2 N MET A 157 ? N MET A 178 O LYS A 199 ? O LYS A 220 # _atom_sites.entry_id 5F4T _atom_sites.fract_transf_matrix[1][1] 0.007934 _atom_sites.fract_transf_matrix[1][2] 0.004581 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009161 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016422 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 22 22 CYS CYS A . n A 1 2 VAL 2 23 23 VAL VAL A . n A 1 3 ILE 3 24 24 ILE ILE A . n A 1 4 CYS 4 25 25 CYS CYS A . n A 1 5 ASP 5 26 26 ASP ASP A . n A 1 6 PRO 6 27 27 PRO PRO A . n A 1 7 SER 7 28 28 SER SER A . n A 1 8 VAL 8 29 29 VAL VAL A . n A 1 9 VAL 9 30 30 VAL VAL A . n A 1 10 LEU 10 31 31 LEU LEU A . n A 1 11 ALA 11 32 32 ALA ALA A . n A 1 12 LEU 12 33 33 LEU LEU A . n A 1 13 LYS 13 34 34 LYS LYS A . n A 1 14 SER 14 35 35 SER SER A . n A 1 15 LEU 15 36 36 LEU LEU A . n A 1 16 GLU 16 37 37 GLU GLU A . n A 1 17 LYS 17 38 38 LYS LYS A . n A 1 18 ASP 18 39 39 ASP ASP A . n A 1 19 TYR 19 40 40 TYR TYR A . n A 1 20 LEU 20 41 41 LEU LEU A . n A 1 21 PRO 21 42 42 PRO PRO A . n A 1 22 GLY 22 43 43 GLY GLY A . n A 1 23 HIS 23 44 44 HIS HIS A . n A 1 24 LEU 24 45 45 LEU LEU A . n A 1 25 ASP 25 46 46 ASP ASP A . n A 1 26 ALA 26 47 47 ALA ALA A . n A 1 27 LYS 27 48 48 LYS LYS A . n A 1 28 HIS 28 49 49 HIS HIS A . n A 1 29 HIS 29 50 50 HIS HIS A . n A 1 30 LYS 30 51 51 LYS LYS A . n A 1 31 ALA 31 52 52 ALA ALA A . n A 1 32 MET 32 53 53 MET MET A . n A 1 33 MET 33 54 54 MET MET A . n A 1 34 GLU 34 55 55 GLU GLU A . n A 1 35 ARG 35 56 56 ARG ARG A . n A 1 36 VAL 36 57 57 VAL VAL A . n A 1 37 GLU 37 58 58 GLU GLU A . n A 1 38 ASN 38 59 59 ASN ASN A . n A 1 39 ALA 39 60 60 ALA ALA A . n A 1 40 VAL 40 61 61 VAL VAL A . n A 1 41 LYS 41 62 62 LYS LYS A . n A 1 42 ASP 42 63 63 ASP ASP A . n A 1 43 PHE 43 64 64 PHE PHE A . n A 1 44 GLN 44 65 65 GLN GLN A . n A 1 45 GLU 45 66 66 GLU GLU A . n A 1 46 LEU 46 67 67 LEU LEU A . n A 1 47 SER 47 68 68 SER SER A . n A 1 48 LEU 48 69 69 LEU LEU A . n A 1 49 ASN 49 70 70 ASN ASN A . n A 1 50 GLU 50 71 71 GLU GLU A . n A 1 51 ASP 51 72 72 ASP ASP A . n A 1 52 ALA 52 73 73 ALA ALA A . n A 1 53 TYR 53 74 74 TYR TYR A . n A 1 54 MET 54 75 75 MET MET A . n A 1 55 GLY 55 76 76 GLY GLY A . n A 1 56 VAL 56 77 77 VAL VAL A . n A 1 57 VAL 57 78 78 VAL VAL A . n A 1 58 ASP 58 79 79 ASP ASP A . n A 1 59 GLU 59 80 80 GLU GLU A . n A 1 60 ALA 60 81 81 ALA ALA A . n A 1 61 THR 61 82 82 THR THR A . n A 1 62 LEU 62 83 83 LEU LEU A . n A 1 63 GLN 63 84 84 GLN GLN A . n A 1 64 LYS 64 85 85 LYS LYS A . n A 1 65 GLY 65 86 86 GLY GLY A . n A 1 66 SER 66 87 87 SER SER A . n A 1 67 TRP 67 88 88 TRP TRP A . n A 1 68 SER 68 89 89 SER SER A . n A 1 69 LEU 69 90 90 LEU LEU A . n A 1 70 LEU 70 91 91 LEU LEU A . n A 1 71 LYS 71 92 92 LYS LYS A . n A 1 72 ASP 72 93 93 ASP ASP A . n A 1 73 LEU 73 94 94 LEU LEU A . n A 1 74 LYS 74 95 95 LYS LYS A . n A 1 75 ARG 75 96 96 ARG ARG A . n A 1 76 ILE 76 97 97 ILE ILE A . n A 1 77 THR 77 98 98 THR THR A . n A 1 78 ASP 78 99 99 ASP ASP A . n A 1 79 SER 79 100 100 SER SER A . n A 1 80 ASP 80 101 101 ASP ASP A . n A 1 81 VAL 81 102 102 VAL VAL A . n A 1 82 LYS 82 103 103 LYS LYS A . n A 1 83 GLY 83 104 104 GLY GLY A . n A 1 84 ASP 84 105 105 ASP ASP A . n A 1 85 LEU 85 106 106 LEU LEU A . n A 1 86 PHE 86 107 107 PHE PHE A . n A 1 87 VAL 87 108 108 VAL VAL A . n A 1 88 LYS 88 109 109 LYS LYS A . n A 1 89 GLU 89 110 110 GLU GLU A . n A 1 90 LEU 90 111 111 LEU LEU A . n A 1 91 PHE 91 112 112 PHE PHE A . n A 1 92 TRP 92 113 113 TRP TRP A . n A 1 93 MET 93 114 114 MET MET A . n A 1 94 LEU 94 115 115 LEU LEU A . n A 1 95 HIS 95 116 116 HIS HIS A . n A 1 96 LEU 96 117 117 LEU LEU A . n A 1 97 GLN 97 118 118 GLN GLN A . n A 1 98 LYS 98 119 119 LYS LYS A . n A 1 99 GLU 99 120 120 GLU GLU A . n A 1 100 THR 100 121 121 THR THR A . n A 1 101 PHE 101 122 122 PHE PHE A . n A 1 102 ALA 102 123 123 ALA ALA A . n A 1 103 THR 103 124 124 THR THR A . n A 1 104 TYR 104 125 125 TYR TYR A . n A 1 105 VAL 105 126 126 VAL VAL A . n A 1 106 ALA 106 127 127 ALA ALA A . n A 1 107 ARG 107 128 128 ARG ARG A . n A 1 108 PHE 108 129 129 PHE PHE A . n A 1 109 GLN 109 130 130 GLN GLN A . n A 1 110 LYS 110 131 131 LYS LYS A . n A 1 111 GLU 111 132 132 GLU GLU A . n A 1 112 ALA 112 133 133 ALA ALA A . n A 1 113 TYR 113 134 134 TYR TYR A . n A 1 114 CYS 114 135 135 CYS CYS A . n A 1 115 PRO 115 136 136 PRO PRO A . n A 1 116 ASN 116 137 137 ASN ASN A . n A 1 117 LYS 117 138 138 LYS LYS A . n A 1 118 CYS 118 139 139 CYS CYS A . n A 1 119 GLY 119 140 140 GLY GLY A . n A 1 120 VAL 120 141 141 VAL VAL A . n A 1 121 MET 121 142 142 MET MET A . n A 1 122 LEU 122 143 143 LEU LEU A . n A 1 123 GLN 123 144 144 GLN GLN A . n A 1 124 THR 124 145 145 THR THR A . n A 1 125 LEU 125 146 146 LEU LEU A . n A 1 126 ILE 126 147 147 ILE ILE A . n A 1 127 TRP 127 148 148 TRP TRP A . n A 1 128 CYS 128 149 149 CYS CYS A . n A 1 129 LYS 129 150 150 LYS LYS A . n A 1 130 ASN 130 151 151 ASN ASN A . n A 1 131 CYS 131 152 152 CYS CYS A . n A 1 132 LYS 132 153 153 LYS LYS A . n A 1 133 LYS 133 154 154 LYS LYS A . n A 1 134 GLU 134 155 155 GLU GLU A . n A 1 135 VAL 135 156 156 VAL VAL A . n A 1 136 HIS 136 157 157 HIS HIS A . n A 1 137 ALA 137 158 158 ALA ALA A . n A 1 138 CYS 138 159 159 CYS CYS A . n A 1 139 ARG 139 160 160 ARG ARG A . n A 1 140 LYS 140 161 161 LYS LYS A . n A 1 141 SER 141 162 162 SER SER A . n A 1 142 TYR 142 163 163 TYR TYR A . n A 1 143 ASP 143 164 164 ASP ASP A . n A 1 144 CYS 144 165 165 CYS CYS A . n A 1 145 GLY 145 166 166 GLY GLY A . n A 1 146 GLU 146 167 167 GLU GLU A . n A 1 147 ARG 147 168 168 ARG ARG A . n A 1 148 ASN 148 169 169 ASN ASN A . n A 1 149 VAL 149 170 170 VAL VAL A . n A 1 150 GLU 150 171 171 GLU GLU A . n A 1 151 VAL 151 172 172 VAL VAL A . n A 1 152 PRO 152 173 173 PRO PRO A . n A 1 153 GLN 153 174 174 GLN GLN A . n A 1 154 MET 154 175 175 MET MET A . n A 1 155 GLU 155 176 176 GLU GLU A . n A 1 156 ASP 156 177 177 ASP ASP A . n A 1 157 MET 157 178 178 MET MET A . n A 1 158 ILE 158 179 179 ILE ILE A . n A 1 159 LEU 159 180 180 LEU LEU A . n A 1 160 ASP 160 181 181 ASP ASP A . n A 1 161 CYS 161 182 182 CYS CYS A . n A 1 162 GLU 162 183 183 GLU GLU A . n A 1 163 LEU 163 184 184 LEU LEU A . n A 1 164 ASN 164 185 185 ASN ASN A . n A 1 165 TRP 165 186 186 TRP TRP A . n A 1 166 HIS 166 187 187 HIS HIS A . n A 1 167 GLN 167 188 188 GLN GLN A . n A 1 168 ALA 168 189 189 ALA ALA A . n A 1 169 SER 169 190 190 SER SER A . n A 1 170 GLU 170 191 191 GLU GLU A . n A 1 171 GLY 171 192 192 GLY GLY A . n A 1 172 LEU 172 193 193 LEU LEU A . n A 1 173 THR 173 194 194 THR THR A . n A 1 174 ASP 174 195 195 ASP ASP A . n A 1 175 TYR 175 196 196 TYR TYR A . n A 1 176 SER 176 197 197 SER SER A . n A 1 177 PHE 177 198 198 PHE PHE A . n A 1 178 TYR 178 199 199 TYR TYR A . n A 1 179 ARG 179 200 200 ARG ARG A . n A 1 180 VAL 180 201 201 VAL VAL A . n A 1 181 TRP 181 202 202 TRP TRP A . n A 1 182 GLY 182 203 203 GLY GLY A . n A 1 183 ASN 183 204 204 ASN ASN A . n A 1 184 ASN 184 205 205 ASN ASN A . n A 1 185 THR 185 206 206 THR THR A . n A 1 186 GLU 186 207 207 GLU GLU A . n A 1 187 THR 187 208 208 THR THR A . n A 1 188 LEU 188 209 209 LEU LEU A . n A 1 189 VAL 189 210 210 VAL VAL A . n A 1 190 SER 190 211 211 SER SER A . n A 1 191 LYS 191 212 212 LYS LYS A . n A 1 192 GLY 192 213 213 GLY GLY A . n A 1 193 LYS 193 214 214 LYS LYS A . n A 1 194 GLU 194 215 215 GLU GLU A . n A 1 195 ALA 195 216 216 ALA ALA A . n A 1 196 THR 196 217 217 THR THR A . n A 1 197 LEU 197 218 218 LEU LEU A . n A 1 198 THR 198 219 219 THR THR A . n A 1 199 LYS 199 220 220 LYS LYS A . n A 1 200 PRO 200 221 221 PRO PRO A . n A 1 201 MET 201 222 222 MET MET A . n A 1 202 VAL 202 223 223 VAL VAL A . n A 1 203 GLY 203 224 224 GLY GLY A . n A 1 204 PRO 204 225 225 PRO PRO A . n A 1 205 GLU 205 226 226 GLU GLU A . n A 1 206 ASP 206 227 227 ASP ASP A . n A 1 207 ALA 207 228 228 ALA ALA A . n A 1 208 GLY 208 229 229 GLY GLY A . n A 1 209 SER 209 230 230 SER SER A . n A 1 210 TYR 210 231 231 TYR TYR A . n A 1 211 ARG 211 232 232 ARG ARG A . n A 1 212 CYS 212 233 233 CYS CYS A . n A 1 213 GLU 213 234 234 GLU GLU A . n A 1 214 LEU 214 235 235 LEU LEU A . n A 1 215 GLY 215 236 236 GLY GLY A . n A 1 216 SER 216 237 237 SER SER A . n A 1 217 VAL 217 238 238 VAL VAL A . n A 1 218 ASN 218 239 239 ASN ASN A . n A 1 219 SER 219 240 240 SER SER A . n A 1 220 SER 220 241 241 SER SER A . n A 1 221 PRO 221 242 242 PRO PRO A . n A 1 222 ALA 222 243 243 ALA ALA A . n A 1 223 THR 223 244 244 THR THR A . n A 1 224 ILE 224 245 245 ILE ILE A . n A 1 225 ILE 225 246 246 ILE ILE A . n A 1 226 ASN 226 247 247 ASN ASN A . n A 1 227 PHE 227 248 248 PHE PHE A . n A 1 228 HIS 228 249 249 HIS HIS A . n A 1 229 VAL 229 250 250 VAL VAL A . n A 1 230 THR 230 251 251 THR THR A . n A 1 231 VAL 231 252 252 VAL VAL A . n A 1 232 LEU 232 253 253 LEU LEU A . n A 1 233 PRO 233 254 254 PRO PRO A . n A 1 234 GLY 234 255 255 GLY GLY A . n A 1 235 ARG 235 256 256 ARG ARG A . n A 1 236 VAL 236 257 ? ? ? A . n A 1 237 LEU 237 258 ? ? ? A . n A 1 238 PRO 238 259 ? ? ? A . n A 1 239 ARG 239 260 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 301 301 NAG NAG A . C 3 HOH 1 401 401 HOH HOH A . C 3 HOH 2 402 402 HOH HOH A . C 3 HOH 3 403 403 HOH HOH A . C 3 HOH 4 404 404 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-15 2 'Structure model' 1 1 2016-06-29 3 'Structure model' 1 2 2016-07-06 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-09-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Refinement description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' citation 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_citation.journal_id_CSD' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 7 4 'Structure model' '_struct_conn.pdbx_role' 8 5 'Structure model' '_chem_comp.pdbx_synonyms' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -11.7127 -11.9379 -5.3897 0.6795 0.6872 0.6900 -0.1124 -0.0208 -0.0250 4.3294 5.8911 3.9986 -1.3886 0.3015 0.2078 -0.1506 -0.0377 0.3028 0.0723 -0.1812 -1.2482 -0.6523 0.2991 0.2213 'X-RAY DIFFRACTION' 2 ? refined -19.7932 -8.4226 -3.4518 1.1770 0.5070 0.7387 -0.0035 0.1789 -0.0096 2.6086 2.5532 4.9600 2.1806 -0.6990 -2.4311 -0.3304 0.6473 1.0251 1.4401 0.9997 0.7083 -0.7273 -0.0781 0.1687 'X-RAY DIFFRACTION' 3 ? refined -32.8308 -22.5716 1.7284 0.7194 0.9347 1.0468 0.0105 0.0673 0.3552 1.8624 1.8203 1.9227 -1.8380 1.2629 -1.3423 -0.2665 -0.4291 -0.0770 0.1257 1.1079 0.9143 -0.0670 -1.2017 -0.8283 'X-RAY DIFFRACTION' 4 ? refined -21.7143 -20.8917 -9.0330 0.7933 0.5124 0.4773 -0.0467 0.0060 0.0536 4.4832 4.3683 3.1764 0.3721 0.7389 -1.6366 -0.4513 0.1579 0.0754 -1.1870 0.3786 -0.0402 0.3028 -0.0487 -0.0247 'X-RAY DIFFRACTION' 5 ? refined -29.1204 -31.4795 11.8721 0.5240 0.5989 0.7053 0.0195 0.0233 0.0409 2.7521 2.4456 4.1653 -0.5600 -0.7477 1.1139 0.1365 -0.2731 -0.0235 -0.1200 -0.0327 1.0035 -0.3031 -0.2025 -0.0033 'X-RAY DIFFRACTION' 6 ? refined -28.4206 -53.8714 11.3037 0.6822 0.5950 0.5963 -0.0311 -0.1473 0.1013 2.4857 6.0884 3.4251 2.4794 -0.9998 0.0134 -0.0416 0.3394 -0.0230 0.2204 0.6175 0.1461 0.5594 -0.1215 -0.4901 'X-RAY DIFFRACTION' 7 ? refined -28.4925 -60.7477 24.2005 0.7379 0.9761 0.7195 -0.1376 -0.0278 0.3550 1.1900 2.9048 2.5820 1.1630 -0.0300 -0.3359 -0.2537 -0.6878 -0.7464 0.4062 0.1795 0.0784 0.5035 -0.8843 0.1530 'X-RAY DIFFRACTION' 8 ? refined -25.4415 -58.0724 17.7859 0.7984 0.5851 0.5590 -0.1476 -0.0876 0.1735 4.1705 3.0493 2.1048 1.4450 0.0610 -0.7518 0.1868 -0.3348 -0.2417 0.6806 -0.0501 0.1296 1.0989 -0.5245 -0.0572 'X-RAY DIFFRACTION' 9 ? refined -32.8013 -64.0907 12.3339 1.1244 0.9848 0.7515 -0.2515 -0.2444 0.0979 0.7548 3.2814 1.4290 -0.5297 -0.8952 1.1582 0.6287 0.8094 -0.3867 0.0673 -0.3044 0.7681 1.4648 -0.7875 0.2585 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 22 through 50 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 51 through 63 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 64 through 79 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 80 through 132 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 133 through 160 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 161 through 195 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 196 through 210 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 211 through 243 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 244 through 256 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.8 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 204 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 NAG _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 132 ? ? -130.08 -45.64 2 1 LYS A 161 ? ? -144.85 -156.66 3 1 MET A 175 ? ? 70.14 -1.49 4 1 ASN A 204 ? ? -55.97 -8.90 5 1 ASN A 205 ? ? 77.40 -11.00 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 34 ? CG ? A LYS 13 CG 2 1 Y 1 A LYS 34 ? CD ? A LYS 13 CD 3 1 Y 1 A LYS 34 ? CE ? A LYS 13 CE 4 1 Y 1 A LYS 34 ? NZ ? A LYS 13 NZ 5 1 Y 1 A GLU 37 ? CG ? A GLU 16 CG 6 1 Y 1 A GLU 37 ? CD ? A GLU 16 CD 7 1 Y 1 A GLU 37 ? OE1 ? A GLU 16 OE1 8 1 Y 1 A GLU 37 ? OE2 ? A GLU 16 OE2 9 1 Y 1 A LYS 38 ? CG ? A LYS 17 CG 10 1 Y 1 A LYS 38 ? CD ? A LYS 17 CD 11 1 Y 1 A LYS 38 ? CE ? A LYS 17 CE 12 1 Y 1 A LYS 38 ? NZ ? A LYS 17 NZ 13 1 Y 1 A LEU 41 ? CG ? A LEU 20 CG 14 1 Y 1 A LEU 41 ? CD1 ? A LEU 20 CD1 15 1 Y 1 A LEU 41 ? CD2 ? A LEU 20 CD2 16 1 Y 1 A ASP 46 ? CG ? A ASP 25 CG 17 1 Y 1 A ASP 46 ? OD1 ? A ASP 25 OD1 18 1 Y 1 A ASP 46 ? OD2 ? A ASP 25 OD2 19 1 Y 1 A LYS 48 ? CG ? A LYS 27 CG 20 1 Y 1 A LYS 48 ? CD ? A LYS 27 CD 21 1 Y 1 A LYS 48 ? CE ? A LYS 27 CE 22 1 Y 1 A LYS 48 ? NZ ? A LYS 27 NZ 23 1 Y 1 A LYS 51 ? CG ? A LYS 30 CG 24 1 Y 1 A LYS 51 ? CD ? A LYS 30 CD 25 1 Y 1 A LYS 51 ? CE ? A LYS 30 CE 26 1 Y 1 A LYS 51 ? NZ ? A LYS 30 NZ 27 1 Y 1 A GLU 55 ? CG ? A GLU 34 CG 28 1 Y 1 A GLU 55 ? CD ? A GLU 34 CD 29 1 Y 1 A GLU 55 ? OE1 ? A GLU 34 OE1 30 1 Y 1 A GLU 55 ? OE2 ? A GLU 34 OE2 31 1 Y 1 A ARG 56 ? NE ? A ARG 35 NE 32 1 Y 1 A ARG 56 ? CZ ? A ARG 35 CZ 33 1 Y 1 A ARG 56 ? NH1 ? A ARG 35 NH1 34 1 Y 1 A ARG 56 ? NH2 ? A ARG 35 NH2 35 1 Y 1 A LYS 62 ? CG ? A LYS 41 CG 36 1 Y 1 A LYS 62 ? CD ? A LYS 41 CD 37 1 Y 1 A LYS 62 ? CE ? A LYS 41 CE 38 1 Y 1 A LYS 62 ? NZ ? A LYS 41 NZ 39 1 Y 1 A GLU 66 ? CG ? A GLU 45 CG 40 1 Y 1 A GLU 66 ? CD ? A GLU 45 CD 41 1 Y 1 A GLU 66 ? OE1 ? A GLU 45 OE1 42 1 Y 1 A GLU 66 ? OE2 ? A GLU 45 OE2 43 1 Y 1 A SER 68 ? OG ? A SER 47 OG 44 1 Y 1 A ASN 70 ? CG ? A ASN 49 CG 45 1 Y 1 A ASN 70 ? OD1 ? A ASN 49 OD1 46 1 Y 1 A ASN 70 ? ND2 ? A ASN 49 ND2 47 1 Y 1 A GLU 71 ? CG ? A GLU 50 CG 48 1 Y 1 A GLU 71 ? CD ? A GLU 50 CD 49 1 Y 1 A GLU 71 ? OE1 ? A GLU 50 OE1 50 1 Y 1 A GLU 71 ? OE2 ? A GLU 50 OE2 51 1 Y 1 A ASP 72 ? CG ? A ASP 51 CG 52 1 Y 1 A ASP 72 ? OD1 ? A ASP 51 OD1 53 1 Y 1 A ASP 72 ? OD2 ? A ASP 51 OD2 54 1 Y 1 A LYS 95 ? CG ? A LYS 74 CG 55 1 Y 1 A LYS 95 ? CD ? A LYS 74 CD 56 1 Y 1 A LYS 95 ? CE ? A LYS 74 CE 57 1 Y 1 A LYS 95 ? NZ ? A LYS 74 NZ 58 1 Y 1 A ASP 101 ? CG ? A ASP 80 CG 59 1 Y 1 A ASP 101 ? OD1 ? A ASP 80 OD1 60 1 Y 1 A ASP 101 ? OD2 ? A ASP 80 OD2 61 1 Y 1 A LEU 106 ? CG ? A LEU 85 CG 62 1 Y 1 A LEU 106 ? CD1 ? A LEU 85 CD1 63 1 Y 1 A LEU 106 ? CD2 ? A LEU 85 CD2 64 1 Y 1 A LYS 109 ? CG ? A LYS 88 CG 65 1 Y 1 A LYS 109 ? CD ? A LYS 88 CD 66 1 Y 1 A LYS 109 ? CE ? A LYS 88 CE 67 1 Y 1 A LYS 109 ? NZ ? A LYS 88 NZ 68 1 Y 1 A GLU 110 ? CG ? A GLU 89 CG 69 1 Y 1 A GLU 110 ? CD ? A GLU 89 CD 70 1 Y 1 A GLU 110 ? OE1 ? A GLU 89 OE1 71 1 Y 1 A GLU 110 ? OE2 ? A GLU 89 OE2 72 1 Y 1 A LYS 131 ? CG ? A LYS 110 CG 73 1 Y 1 A LYS 131 ? CD ? A LYS 110 CD 74 1 Y 1 A LYS 131 ? CE ? A LYS 110 CE 75 1 Y 1 A LYS 131 ? NZ ? A LYS 110 NZ 76 1 Y 1 A LYS 138 ? CG ? A LYS 117 CG 77 1 Y 1 A LYS 138 ? CD ? A LYS 117 CD 78 1 Y 1 A LYS 138 ? CE ? A LYS 117 CE 79 1 Y 1 A LYS 138 ? NZ ? A LYS 117 NZ 80 1 Y 1 A LYS 150 ? CG ? A LYS 129 CG 81 1 Y 1 A LYS 150 ? CD ? A LYS 129 CD 82 1 Y 1 A LYS 150 ? CE ? A LYS 129 CE 83 1 Y 1 A LYS 150 ? NZ ? A LYS 129 NZ 84 1 Y 1 A LYS 153 ? CG ? A LYS 132 CG 85 1 Y 1 A LYS 153 ? CD ? A LYS 132 CD 86 1 Y 1 A LYS 153 ? CE ? A LYS 132 CE 87 1 Y 1 A LYS 153 ? NZ ? A LYS 132 NZ 88 1 Y 1 A LYS 161 ? CG ? A LYS 140 CG 89 1 Y 1 A LYS 161 ? CD ? A LYS 140 CD 90 1 Y 1 A LYS 161 ? CE ? A LYS 140 CE 91 1 Y 1 A LYS 161 ? NZ ? A LYS 140 NZ 92 1 Y 1 A TYR 163 ? CG ? A TYR 142 CG 93 1 Y 1 A TYR 163 ? CD1 ? A TYR 142 CD1 94 1 Y 1 A TYR 163 ? CD2 ? A TYR 142 CD2 95 1 Y 1 A TYR 163 ? CE1 ? A TYR 142 CE1 96 1 Y 1 A TYR 163 ? CE2 ? A TYR 142 CE2 97 1 Y 1 A TYR 163 ? CZ ? A TYR 142 CZ 98 1 Y 1 A TYR 163 ? OH ? A TYR 142 OH 99 1 Y 1 A ASP 164 ? CG ? A ASP 143 CG 100 1 Y 1 A ASP 164 ? OD1 ? A ASP 143 OD1 101 1 Y 1 A ASP 164 ? OD2 ? A ASP 143 OD2 102 1 Y 1 A GLU 171 ? CG ? A GLU 150 CG 103 1 Y 1 A GLU 171 ? CD ? A GLU 150 CD 104 1 Y 1 A GLU 171 ? OE1 ? A GLU 150 OE1 105 1 Y 1 A GLU 171 ? OE2 ? A GLU 150 OE2 106 1 Y 1 A GLN 174 ? CG ? A GLN 153 CG 107 1 Y 1 A GLN 174 ? CD ? A GLN 153 CD 108 1 Y 1 A GLN 174 ? OE1 ? A GLN 153 OE1 109 1 Y 1 A GLN 174 ? NE2 ? A GLN 153 NE2 110 1 Y 1 A GLU 176 ? CG ? A GLU 155 CG 111 1 Y 1 A GLU 176 ? CD ? A GLU 155 CD 112 1 Y 1 A GLU 176 ? OE1 ? A GLU 155 OE1 113 1 Y 1 A GLU 176 ? OE2 ? A GLU 155 OE2 114 1 Y 1 A GLU 183 ? CG ? A GLU 162 CG 115 1 Y 1 A GLU 183 ? CD ? A GLU 162 CD 116 1 Y 1 A GLU 183 ? OE1 ? A GLU 162 OE1 117 1 Y 1 A GLU 183 ? OE2 ? A GLU 162 OE2 118 1 Y 1 A ASN 205 ? CG ? A ASN 184 CG 119 1 Y 1 A ASN 205 ? OD1 ? A ASN 184 OD1 120 1 Y 1 A ASN 205 ? ND2 ? A ASN 184 ND2 121 1 Y 1 A GLU 215 ? CG ? A GLU 194 CG 122 1 Y 1 A GLU 215 ? CD ? A GLU 194 CD 123 1 Y 1 A GLU 215 ? OE1 ? A GLU 194 OE1 124 1 Y 1 A GLU 215 ? OE2 ? A GLU 194 OE2 125 1 Y 1 A LYS 220 ? CG ? A LYS 199 CG 126 1 Y 1 A LYS 220 ? CD ? A LYS 199 CD 127 1 Y 1 A LYS 220 ? CE ? A LYS 199 CE 128 1 Y 1 A LYS 220 ? NZ ? A LYS 199 NZ 129 1 Y 1 A ASN 239 ? CG ? A ASN 218 CG 130 1 Y 1 A ASN 239 ? OD1 ? A ASN 218 OD1 131 1 Y 1 A ASN 239 ? ND2 ? A ASN 218 ND2 132 1 Y 1 A ARG 256 ? CG ? A ARG 235 CG 133 1 Y 1 A ARG 256 ? CD ? A ARG 235 CD 134 1 Y 1 A ARG 256 ? NE ? A ARG 235 NE 135 1 Y 1 A ARG 256 ? CZ ? A ARG 235 CZ 136 1 Y 1 A ARG 256 ? NH1 ? A ARG 235 NH1 137 1 Y 1 A ARG 256 ? NH2 ? A ARG 235 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 257 ? A VAL 236 2 1 Y 1 A LEU 258 ? A LEU 237 3 1 Y 1 A PRO 259 ? A PRO 238 4 1 Y 1 A ARG 260 ? A ARG 239 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NAG C1 C N R 250 NAG C2 C N R 251 NAG C3 C N R 252 NAG C4 C N S 253 NAG C5 C N R 254 NAG C6 C N N 255 NAG C7 C N N 256 NAG C8 C N N 257 NAG N2 N N N 258 NAG O1 O N N 259 NAG O3 O N N 260 NAG O4 O N N 261 NAG O5 O N N 262 NAG O6 O N N 263 NAG O7 O N N 264 NAG H1 H N N 265 NAG H2 H N N 266 NAG H3 H N N 267 NAG H4 H N N 268 NAG H5 H N N 269 NAG H61 H N N 270 NAG H62 H N N 271 NAG H81 H N N 272 NAG H82 H N N 273 NAG H83 H N N 274 NAG HN2 H N N 275 NAG HO1 H N N 276 NAG HO3 H N N 277 NAG HO4 H N N 278 NAG HO6 H N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NAG C1 C2 sing N N 237 NAG C1 O1 sing N N 238 NAG C1 O5 sing N N 239 NAG C1 H1 sing N N 240 NAG C2 C3 sing N N 241 NAG C2 N2 sing N N 242 NAG C2 H2 sing N N 243 NAG C3 C4 sing N N 244 NAG C3 O3 sing N N 245 NAG C3 H3 sing N N 246 NAG C4 C5 sing N N 247 NAG C4 O4 sing N N 248 NAG C4 H4 sing N N 249 NAG C5 C6 sing N N 250 NAG C5 O5 sing N N 251 NAG C5 H5 sing N N 252 NAG C6 O6 sing N N 253 NAG C6 H61 sing N N 254 NAG C6 H62 sing N N 255 NAG C7 C8 sing N N 256 NAG C7 N2 sing N N 257 NAG C7 O7 doub N N 258 NAG C8 H81 sing N N 259 NAG C8 H82 sing N N 260 NAG C8 H83 sing N N 261 NAG N2 HN2 sing N N 262 NAG O1 HO1 sing N N 263 NAG O3 HO3 sing N N 264 NAG O4 HO4 sing N N 265 NAG O6 HO6 sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5F4E _pdbx_initial_refinement_model.details ? #