HEADER OXIDOREDUCTASE 04-DEC-15 5F5C TITLE CRYSTAL STRUCTURE OF HUMAN JMJD2D COMPLEXED WITH KDOPP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OXIDOREDUCTASE-2OG; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3D, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2D; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM4D, JHDM3D, JMJD2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DOUBLE-STRANDED BETA HELIX, DEMETHYLASE, OXYGENASE, OXIDOREDUCTASE, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,M.VOLLMAR,L.CRAWLEY,A.R.BRADLEY,A.SZYKOWSKA,G.F.RUDA,H.YANG, AUTHOR 2 N.BURGESS-BROWN,P.BRENNAN,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS, AUTHOR 3 U.OPPERMANN,F.VON DELFT,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 10-JAN-24 5F5C 1 LINK REVDAT 3 14-SEP-16 5F5C 1 AUTHOR REVDAT 2 27-APR-16 5F5C 1 JRNL REVDAT 1 30-DEC-15 5F5C 0 JRNL AUTH V.BAVETSIAS,R.M.LANIGAN,G.F.RUDA,B.ATRASH,M.G.MCLAUGHLIN, JRNL AUTH 2 A.TUMBER,N.Y.MOK,Y.V.LE BIHAN,S.DEMPSTER,K.J.BOXALL, JRNL AUTH 3 F.JEGANATHAN,S.B.HATCH,P.SAVITSKY,S.VELUPILLAI,T.KROJER, JRNL AUTH 4 K.S.ENGLAND,J.SEJBERG,C.THAI,A.DONOVAN,A.PAL,G.SCOZZAFAVA, JRNL AUTH 5 J.M.BENNETT,A.KAWAMURA,C.JOHANSSON,A.SZYKOWSKA,C.GILEADI, JRNL AUTH 6 N.A.BURGESS-BROWN,F.VON DELFT,U.OPPERMANN,Z.WALTERS, JRNL AUTH 7 J.SHIPLEY,F.I.RAYNAUD,S.M.WESTAWAY,R.K.PRINJHA,O.FEDOROV, JRNL AUTH 8 R.BURKE,C.J.SCHOFIELD,I.M.WESTWOOD,C.BOUNTRA,S.MULLER, JRNL AUTH 9 R.L.VAN MONTFORT,P.E.BRENNAN,J.BLAGG JRNL TITL 8-SUBSTITUTED PYRIDO[3,4-D]PYRIMIDIN-4(3H)-ONE DERIVATIVES JRNL TITL 2 AS POTENT, CELL PERMEABLE, KDM4 (JMJD2) AND KDM5 (JARID1) JRNL TITL 3 HISTONE LYSINE DEMETHYLASE INHIBITORS. JRNL REF J.MED.CHEM. V. 59 1388 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26741168 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01635 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2991 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2714 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4076 ; 1.693 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6255 ; 1.002 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;36.222 ;23.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;14.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.992 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3518 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 0.572 ; 0.755 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1423 ; 0.572 ; 0.754 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1815 ; 1.000 ; 1.128 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3874 7.3108 16.8998 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0415 REMARK 3 T33: 0.0483 T12: 0.0274 REMARK 3 T13: 0.0003 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.4917 L22: 0.3352 REMARK 3 L33: 0.9689 L12: 0.0278 REMARK 3 L13: 0.4616 L23: 0.1485 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0372 S13: 0.0553 REMARK 3 S21: -0.0142 S22: 0.0176 S23: 0.0245 REMARK 3 S31: -0.1074 S32: -0.0859 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7191 0.9553 17.8928 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0423 REMARK 3 T33: 0.0447 T12: -0.0084 REMARK 3 T13: 0.0088 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.6575 L22: 0.6268 REMARK 3 L33: 0.9419 L12: -0.0688 REMARK 3 L13: 0.0382 L23: 0.3480 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0047 S13: 0.0085 REMARK 3 S21: -0.0041 S22: 0.0078 S23: -0.0809 REMARK 3 S31: -0.0241 S32: 0.1503 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4562 4.3886 28.4983 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0337 REMARK 3 T33: 0.0091 T12: -0.0074 REMARK 3 T13: -0.0121 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.2010 L22: 0.2847 REMARK 3 L33: 0.6026 L12: -0.1248 REMARK 3 L13: -0.7654 L23: 0.2598 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.0594 S13: 0.0429 REMARK 3 S21: 0.0545 S22: -0.0491 S23: -0.0339 REMARK 3 S31: -0.0347 S32: 0.0200 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4410 -4.3773 27.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0487 REMARK 3 T33: 0.0266 T12: -0.0141 REMARK 3 T13: 0.0013 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.4553 L22: 0.2424 REMARK 3 L33: 0.2093 L12: 0.2404 REMARK 3 L13: -0.0940 L23: 0.0817 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.0028 S13: -0.0012 REMARK 3 S21: 0.0614 S22: -0.0547 S23: -0.0278 REMARK 3 S31: 0.0097 S32: -0.0286 S33: -0.0123 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2219 -6.3775 13.2232 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0433 REMARK 3 T33: 0.0372 T12: 0.0044 REMARK 3 T13: 0.0010 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.3979 L22: 0.2813 REMARK 3 L33: 0.2599 L12: -0.1705 REMARK 3 L13: -0.1768 L23: 0.1541 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0103 S13: -0.0179 REMARK 3 S21: -0.0083 S22: -0.0220 S23: 0.0125 REMARK 3 S31: 0.0008 S32: 0.0143 S33: 0.0292 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3700 -15.8918 22.2984 REMARK 3 T TENSOR REMARK 3 T11: 0.0335 T22: 0.0397 REMARK 3 T33: 0.0338 T12: -0.0059 REMARK 3 T13: 0.0161 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.6441 L22: 1.7054 REMARK 3 L33: 0.6391 L12: -1.1638 REMARK 3 L13: -1.6054 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.1811 S13: -0.2114 REMARK 3 S21: 0.0402 S22: -0.0048 S23: 0.1702 REMARK 3 S31: 0.0156 S32: 0.0765 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 319 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2819 -21.8857 29.0998 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0435 REMARK 3 T33: 0.0252 T12: -0.0320 REMARK 3 T13: -0.0103 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.4671 L22: 3.3245 REMARK 3 L33: 2.3206 L12: -0.6160 REMARK 3 L13: -0.2483 L23: 2.1521 REMARK 3 S TENSOR REMARK 3 S11: -0.2242 S12: 0.1186 S13: -0.1743 REMARK 3 S21: 0.3255 S22: 0.1137 S23: 0.0268 REMARK 3 S31: -0.0129 S32: 0.2443 S33: 0.1105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5F5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32698 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 64.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.95 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4D6Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG3350 , 0.1M HEPES PH 6.8 , 0.2M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.39500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.79700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.79700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.09250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.79700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.79700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.69750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.79700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.79700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.09250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.79700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.79700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.69750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 812 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 MET A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 CYS A 10 REMARK 465 ASP A 341 REMARK 465 ARG A 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 92 NZ REMARK 470 LYS A 255 CD CE NZ REMARK 470 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 319 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 156 O HOH A 501 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 133 OE1 GLU A 331 6545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 MET A 196 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 186 -6.11 76.66 REMARK 500 LYS A 186 -3.41 76.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 911 DISTANCE = 6.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 GLU A 194 OE2 105.6 REMARK 620 3 HIS A 280 NE2 84.3 90.3 REMARK 620 4 5V3 A 411 N08 89.6 96.7 171.8 REMARK 620 5 5V3 A 411 N15 100.1 153.4 99.0 76.5 REMARK 620 6 HOH A 522 O 163.2 86.1 83.6 101.2 70.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 238 SG REMARK 620 2 HIS A 244 NE2 107.7 REMARK 620 3 CYS A 310 SG 118.8 108.3 REMARK 620 4 CYS A 312 SG 112.7 100.1 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5V3 A 411 DBREF 5F5C A 1 342 UNP Q6B0I6 KDM4D_HUMAN 1 342 SEQADV 5F5C TYR A -3 UNP Q6B0I6 EXPRESSION TAG SEQADV 5F5C PHE A -2 UNP Q6B0I6 EXPRESSION TAG SEQADV 5F5C GLN A -1 UNP Q6B0I6 EXPRESSION TAG SEQADV 5F5C SER A 0 UNP Q6B0I6 EXPRESSION TAG SEQRES 1 A 346 TYR PHE GLN SER MET GLU THR MET LYS SER LYS ALA ASN SEQRES 2 A 346 CYS ALA GLN ASN PRO ASN CYS ASN ILE MET ILE PHE HIS SEQRES 3 A 346 PRO THR LYS GLU GLU PHE ASN ASP PHE ASP LYS TYR ILE SEQRES 4 A 346 ALA TYR MET GLU SER GLN GLY ALA HIS ARG ALA GLY LEU SEQRES 5 A 346 ALA LYS ILE ILE PRO PRO LYS GLU TRP LYS ALA ARG GLU SEQRES 6 A 346 THR TYR ASP ASN ILE SER GLU ILE LEU ILE ALA THR PRO SEQRES 7 A 346 LEU GLN GLN VAL ALA SER GLY ARG ALA GLY VAL PHE THR SEQRES 8 A 346 GLN TYR HIS LYS LYS LYS LYS ALA MET THR VAL GLY GLU SEQRES 9 A 346 TYR ARG HIS LEU ALA ASN SER LYS LYS TYR GLN THR PRO SEQRES 10 A 346 PRO HIS GLN ASN PHE GLU ASP LEU GLU ARG LYS TYR TRP SEQRES 11 A 346 LYS ASN ARG ILE TYR ASN SER PRO ILE TYR GLY ALA ASP SEQRES 12 A 346 ILE SER GLY SER LEU PHE ASP GLU ASN THR LYS GLN TRP SEQRES 13 A 346 ASN LEU GLY HIS LEU GLY THR ILE GLN ASP LEU LEU GLU SEQRES 14 A 346 LYS GLU CYS GLY VAL VAL ILE GLU GLY VAL ASN THR PRO SEQRES 15 A 346 TYR LEU TYR PHE GLY MET TRP LYS THR THR PHE ALA TRP SEQRES 16 A 346 HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR LEU SEQRES 17 A 346 HIS LEU GLY GLU PRO LYS THR TRP TYR VAL VAL PRO PRO SEQRES 18 A 346 GLU HIS GLY GLN ARG LEU GLU ARG LEU ALA ARG GLU LEU SEQRES 19 A 346 PHE PRO GLY SER SER ARG GLY CYS GLY ALA PHE LEU ARG SEQRES 20 A 346 HIS LYS VAL ALA LEU ILE SER PRO THR VAL LEU LYS GLU SEQRES 21 A 346 ASN GLY ILE PRO PHE ASN ARG ILE THR GLN GLU ALA GLY SEQRES 22 A 346 GLU PHE MET VAL THR PHE PRO TYR GLY TYR HIS ALA GLY SEQRES 23 A 346 PHE ASN HIS GLY PHE ASN CYS ALA GLU ALA ILE ASN PHE SEQRES 24 A 346 ALA THR PRO ARG TRP ILE ASP TYR GLY LYS MET ALA SER SEQRES 25 A 346 GLN CYS SER CYS GLY GLU ALA ARG VAL THR PHE SER MET SEQRES 26 A 346 ASP ALA PHE VAL ARG ILE LEU GLN PRO GLU ARG TYR ASP SEQRES 27 A 346 LEU TRP LYS ARG GLY GLN ASP ARG HET ZN A 401 1 HET NI A 402 1 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET EDO A 410 4 HET 5V3 A 411 20 HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM 5V3 8-[[(PHENYLMETHYL)AMINO]METHYL]-1~{H}-PYRIDO[3,4- HETNAM 2 5V3 D]PYRIMIDIN-4-ONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 NI NI 2+ FORMUL 4 EDO 5(C2 H6 O2) FORMUL 8 SO4 3(O4 S 2-) FORMUL 12 5V3 C15 H14 N4 O FORMUL 13 HOH *411(H2 O) HELIX 1 AA1 ASP A 30 GLN A 41 1 12 HELIX 2 AA2 GLY A 42 ALA A 46 5 5 HELIX 3 AA3 VAL A 98 SER A 107 1 10 HELIX 4 AA4 ASN A 117 ARG A 129 1 13 HELIX 5 AA5 ILE A 130 ASN A 132 5 3 HELIX 6 AA6 THR A 159 GLY A 169 1 11 HELIX 7 AA7 GLU A 194 LEU A 198 5 5 HELIX 8 AA8 PRO A 216 GLU A 218 5 3 HELIX 9 AA9 HIS A 219 PHE A 231 1 13 HELIX 10 AB1 PHE A 231 CYS A 238 1 8 HELIX 11 AB2 ALA A 240 LYS A 245 5 6 HELIX 12 AB3 SER A 250 ASN A 257 1 8 HELIX 13 AB4 ARG A 299 ALA A 307 1 9 HELIX 14 AB5 SER A 320 GLN A 329 1 10 HELIX 15 AB6 GLN A 329 GLN A 340 1 12 SHEET 1 AA110 MET A 19 PHE A 21 0 SHEET 2 AA110 LEU A 48 ILE A 51 1 O LYS A 50 N PHE A 21 SHEET 3 AA110 PHE A 271 THR A 274 -1 O PHE A 271 N ILE A 51 SHEET 4 AA110 TYR A 199 GLY A 207 -1 N ASN A 202 O MET A 272 SHEET 5 AA110 ASN A 288 PHE A 295 -1 O GLU A 291 N TYR A 203 SHEET 6 AA110 TYR A 179 GLY A 183 -1 N TYR A 181 O ALA A 290 SHEET 7 AA110 ILE A 135 SER A 141 -1 N GLY A 137 O PHE A 182 SHEET 8 AA110 LEU A 75 ARG A 82 -1 N LEU A 75 O TYR A 136 SHEET 9 AA110 VAL A 85 LYS A 92 -1 O LYS A 91 N GLN A 76 SHEET 10 AA110 ALA A 247 ILE A 249 -1 O LEU A 248 N PHE A 86 SHEET 1 AA2 2 LEU A 70 ILE A 71 0 SHEET 2 AA2 2 MET A 96 THR A 97 -1 O MET A 96 N ILE A 71 SHEET 1 AA3 4 THR A 188 HIS A 192 0 SHEET 2 AA3 4 TYR A 279 ASN A 284 -1 O HIS A 280 N HIS A 192 SHEET 3 AA3 4 LYS A 210 VAL A 215 -1 N TYR A 213 O ALA A 281 SHEET 4 AA3 4 ASN A 262 GLN A 266 -1 O GLN A 266 N LYS A 210 LINK NE2 HIS A 192 NI NI A 402 1555 1555 2.30 LINK OE2 GLU A 194 NI NI A 402 1555 1555 2.05 LINK SG CYS A 238 ZN ZN A 401 1555 1555 2.16 LINK NE2 HIS A 244 ZN ZN A 401 1555 1555 2.22 LINK NE2 HIS A 280 NI NI A 402 1555 1555 2.22 LINK SG CYS A 310 ZN ZN A 401 1555 1555 2.24 LINK SG CYS A 312 ZN ZN A 401 1555 1555 2.39 LINK NI NI A 402 N08 5V3 A 411 1555 1555 2.27 LINK NI NI A 402 N15 5V3 A 411 1555 1555 2.15 LINK NI NI A 402 O HOH A 522 1555 1555 2.33 SITE 1 AC1 4 CYS A 238 HIS A 244 CYS A 310 CYS A 312 SITE 1 AC2 5 HIS A 192 GLU A 194 HIS A 280 5V3 A 411 SITE 2 AC2 5 HOH A 522 SITE 1 AC3 7 ALA A 83 GLY A 84 TRP A 126 SER A 250 SITE 2 AC3 7 VAL A 253 HOH A 541 HOH A 645 SITE 1 AC4 7 LYS A 150 GLN A 151 TRP A 152 ASN A 153 SITE 2 AC4 7 HIS A 156 HOH A 557 HOH A 692 SITE 1 AC5 5 PRO A 251 THR A 252 LYS A 255 ARG A 263 SITE 2 AC5 5 HOH A 740 SITE 1 AC6 6 PHE A 118 GLU A 122 ARG A 263 ILE A 264 SITE 2 AC6 6 THR A 265 HOH A 509 SITE 1 AC7 7 ARG A 60 GLU A 61 THR A 62 ASN A 65 SITE 2 AC7 7 HOH A 582 HOH A 594 HOH A 669 SITE 1 AC8 4 ARG A 123 LYS A 124 LYS A 127 ASN A 128 SITE 1 AC9 5 PRO A 113 LYS A 124 ASN A 128 TRP A 185 SITE 2 AC9 5 LYS A 186 SITE 1 AD1 9 ALA A 105 ASN A 106 GLN A 111 THR A 112 SITE 2 AD1 9 GLY A 286 PHE A 287 HOH A 513 HOH A 577 SITE 3 AD1 9 HOH A 837 SITE 1 AD2 13 TYR A 136 TYR A 179 TYR A 181 PHE A 189 SITE 2 AD2 13 HIS A 192 GLU A 194 SER A 200 LYS A 210 SITE 3 AD2 13 TRP A 212 HIS A 280 ASN A 294 NI A 402 SITE 4 AD2 13 HOH A 522 CRYST1 71.594 71.594 150.790 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006632 0.00000