HEADER TRANSFERASE 04-DEC-15 5F5E TITLE THE CRYSTAL STRUCTURE OF MLL1 SET DOMAIN WITH N3816I/Q3867L MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE 2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MLL1 SET DOMAIN (UNP RESIDUES 3813-3969); COMPND 5 SYNONYM: LYSINE N-METHYLTRANSFERASE 2A,ALL-1,CXXC-TYPE ZINC FINGER COMPND 6 PROTEIN 7,MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA,MYELOID/LYMPHOID COMPND 7 OR MIXED-LINEAGE LEUKEMIA PROTEIN 1,TRITHORAX-LIKE PROTEIN,ZINC COMPND 8 FINGER PROTEIN HRX; COMPND 9 EC: 2.1.1.43; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMT2A, ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B-SUMO KEYWDS HISTONE METHYLTRANSFERASE, HISTONE METHYLATION, SET DOMAIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,M.LEI,Y.CHEN REVDAT 3 08-NOV-23 5F5E 1 JRNL REMARK REVDAT 2 20-APR-16 5F5E 1 JRNL REVDAT 1 24-FEB-16 5F5E 0 JRNL AUTH Y.LI,J.HAN,Y.ZHANG,F.CAO,Z.LIU,S.LI,J.WU,C.HU,Y.WANG, JRNL AUTH 2 J.SHUAI,J.CHEN,L.CAO,D.LI,P.SHI,C.TIAN,J.ZHANG,Y.DOU,G.LI, JRNL AUTH 3 Y.CHEN,M.LEI JRNL TITL STRUCTURAL BASIS FOR ACTIVITY REGULATION OF MLL FAMILY JRNL TITL 2 METHYLTRANSFERASES. JRNL REF NATURE V. 530 447 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 26886794 JRNL DOI 10.1038/NATURE16952 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0709 - 3.2726 1.00 2881 151 0.1750 0.2154 REMARK 3 2 3.2726 - 2.5982 1.00 2768 127 0.2180 0.2272 REMARK 3 3 2.5982 - 2.2699 1.00 2700 163 0.2259 0.2748 REMARK 3 4 2.2699 - 2.0625 1.00 2703 142 0.2209 0.2543 REMARK 3 5 2.0625 - 1.9147 1.00 2698 141 0.2275 0.2649 REMARK 3 6 1.9147 - 1.8018 1.00 2659 151 0.2539 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1211 REMARK 3 ANGLE : 1.105 1624 REMARK 3 CHIRALITY : 0.051 174 REMARK 3 PLANARITY : 0.004 206 REMARK 3 DIHEDRAL : 15.228 452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3814 THROUGH 3822 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3151 328.7671 212.2872 REMARK 3 T TENSOR REMARK 3 T11: 1.2840 T22: 0.5649 REMARK 3 T33: 1.1565 T12: 0.0080 REMARK 3 T13: -0.5869 T23: 0.0885 REMARK 3 L TENSOR REMARK 3 L11: 1.6434 L22: 1.3364 REMARK 3 L33: 6.4793 L12: -1.3597 REMARK 3 L13: 1.5188 L23: -2.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.3180 S12: 0.6715 S13: 0.3783 REMARK 3 S21: -1.8989 S22: 0.2644 S23: 2.2333 REMARK 3 S31: -0.8614 S32: -0.7614 S33: -0.0993 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3823 THROUGH 3835 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8005 313.2893 219.1648 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.3442 REMARK 3 T33: 0.3200 T12: -0.0845 REMARK 3 T13: 0.0078 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.8684 L22: 8.8325 REMARK 3 L33: 4.5199 L12: -3.5307 REMARK 3 L13: 1.4197 L23: -0.4670 REMARK 3 S TENSOR REMARK 3 S11: -0.2329 S12: -0.2525 S13: 0.1360 REMARK 3 S21: 0.2900 S22: 0.0752 S23: 0.3980 REMARK 3 S31: -0.2499 S32: -0.3760 S33: 0.1493 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3836 THROUGH 3860 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9610 311.9052 215.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.2729 REMARK 3 T33: 0.2132 T12: -0.1365 REMARK 3 T13: -0.0118 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.9695 L22: 1.2829 REMARK 3 L33: 2.9928 L12: 1.5698 REMARK 3 L13: 0.3650 L23: 0.2424 REMARK 3 S TENSOR REMARK 3 S11: -0.5514 S12: 0.3715 S13: -0.1375 REMARK 3 S21: -0.6242 S22: 0.6017 S23: -0.0558 REMARK 3 S31: -0.1638 S32: -0.0845 S33: 0.0063 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3861 THROUGH 3878 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9034 317.5244 232.8142 REMARK 3 T TENSOR REMARK 3 T11: 0.3556 T22: 0.2545 REMARK 3 T33: 0.2328 T12: 0.0296 REMARK 3 T13: -0.0619 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 6.7322 L22: 8.0034 REMARK 3 L33: 8.7927 L12: -2.4319 REMARK 3 L13: 0.9306 L23: -4.4220 REMARK 3 S TENSOR REMARK 3 S11: -0.3596 S12: -0.2560 S13: 0.0234 REMARK 3 S21: 0.3775 S22: 0.1002 S23: -0.4897 REMARK 3 S31: -0.0297 S32: 0.6427 S33: 0.2138 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3879 THROUGH 3912 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9263 314.9281 222.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.1903 REMARK 3 T33: 0.2284 T12: -0.0541 REMARK 3 T13: 0.0619 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.6786 L22: 3.2142 REMARK 3 L33: 4.2884 L12: 0.2741 REMARK 3 L13: 1.3352 L23: 0.2282 REMARK 3 S TENSOR REMARK 3 S11: -0.3923 S12: 0.3829 S13: -0.2541 REMARK 3 S21: -0.2417 S22: 0.3238 S23: -0.4369 REMARK 3 S31: 0.0428 S32: 0.2201 S33: 0.0551 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3913 THROUGH 3958 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1576 315.9488 212.7101 REMARK 3 T TENSOR REMARK 3 T11: 0.5693 T22: 0.3602 REMARK 3 T33: 0.2561 T12: -0.2745 REMARK 3 T13: 0.0496 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 2.5899 L22: 2.6944 REMARK 3 L33: 3.0401 L12: 1.1229 REMARK 3 L13: 0.5683 L23: 0.5165 REMARK 3 S TENSOR REMARK 3 S11: -0.6958 S12: 0.4861 S13: -0.2308 REMARK 3 S21: -0.8020 S22: 0.7023 S23: -0.3564 REMARK 3 S31: -0.2649 S32: 0.4023 S33: -0.0757 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3959 THROUGH 3969 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8827 302.7535 210.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.6366 T22: 0.7787 REMARK 3 T33: 0.8337 T12: -0.1199 REMARK 3 T13: 0.3087 T23: -0.5085 REMARK 3 L TENSOR REMARK 3 L11: 4.8110 L22: 2.6291 REMARK 3 L33: 3.5349 L12: -0.8717 REMARK 3 L13: -2.9611 L23: -1.1750 REMARK 3 S TENSOR REMARK 3 S11: 0.5201 S12: 0.0358 S13: 0.1106 REMARK 3 S21: -0.3971 S22: -0.0753 S23: -0.3122 REMARK 3 S31: -0.6828 S32: 0.6073 S33: -2.1253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 2W5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.77067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.88533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.88533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.77067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3812 REMARK 465 ASP A 3813 REMARK 465 PHE A 3946 REMARK 465 PRO A 3947 REMARK 465 ILE A 3948 REMARK 465 GLU A 3949 REMARK 465 ASP A 3950 REMARK 465 ALA A 3951 REMARK 465 SER A 3952 REMARK 465 ASN A 3953 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A3818 SD CE REMARK 470 ARG A3821 CG CD NE CZ NH1 NH2 REMARK 470 LYS A3828 CG CD CE NZ REMARK 470 ASP A3889 CG OD1 OD2 REMARK 470 GLU A3910 CG CD OE1 OE2 REMARK 470 ASP A3921 CG OD1 OD2 REMARK 470 LYS A3945 CG CD CE NZ REMARK 470 LYS A3954 CG CD CE NZ REMARK 470 LEU A3955 CG CD1 CD2 REMARK 470 LYS A3963 CG CD CE NZ REMARK 470 LYS A3966 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 4199 O HOH A 4237 1.89 REMARK 500 O HOH A 4102 O HOH A 4108 1.93 REMARK 500 OD2 ASP A 3869 O HOH A 4101 2.12 REMARK 500 O HOH A 4197 O HOH A 4221 2.13 REMARK 500 NH2 ARG A 3871 O HOH A 4102 2.14 REMARK 500 O HOH A 4174 O HOH A 4218 2.17 REMARK 500 O ILE A 3838 O HOH A 4103 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A3888 -156.97 -160.73 REMARK 500 LYS A3966 -16.85 67.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A3909 SG REMARK 620 2 CYS A3957 SG 99.4 REMARK 620 3 CYS A3959 SG 82.7 97.6 REMARK 620 4 CYS A3964 SG 82.8 174.2 87.9 REMARK 620 5 HOH A4109 O 126.7 119.8 121.9 55.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 4002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F59 RELATED DB: PDB REMARK 900 RELATED ID: 5F6L RELATED DB: PDB REMARK 900 RELATED ID: 5F6K RELATED DB: PDB DBREF 5F5E A 3813 3969 UNP Q03164 KMT2A_HUMAN 3813 3969 SEQADV 5F5E SER A 3812 UNP Q03164 EXPRESSION TAG SEQADV 5F5E ILE A 3861 UNP Q03164 ASN 3861 ENGINEERED MUTATION SEQADV 5F5E LEU A 3867 UNP Q03164 GLN 3867 ENGINEERED MUTATION SEQRES 1 A 158 SER ASP LEU PRO MET PRO MET ARG PHE ARG HIS LEU LYS SEQRES 2 A 158 LYS THR SER LYS GLU ALA VAL GLY VAL TYR ARG SER PRO SEQRES 3 A 158 ILE HIS GLY ARG GLY LEU PHE CYS LYS ARG ASN ILE ASP SEQRES 4 A 158 ALA GLY GLU MET VAL ILE GLU TYR ALA GLY ILE VAL ILE SEQRES 5 A 158 ARG SER ILE LEU THR ASP LYS ARG GLU LYS TYR TYR ASP SEQRES 6 A 158 SER LYS GLY ILE GLY CYS TYR MET PHE ARG ILE ASP ASP SEQRES 7 A 158 SER GLU VAL VAL ASP ALA THR MET HIS GLY ASN ALA ALA SEQRES 8 A 158 ARG PHE ILE ASN HIS SER CYS GLU PRO ASN CYS TYR SER SEQRES 9 A 158 ARG VAL ILE ASN ILE ASP GLY GLN LYS HIS ILE VAL ILE SEQRES 10 A 158 PHE ALA MET ARG LYS ILE TYR ARG GLY GLU GLU LEU THR SEQRES 11 A 158 TYR ASP TYR LYS PHE PRO ILE GLU ASP ALA SER ASN LYS SEQRES 12 A 158 LEU PRO CYS ASN CYS GLY ALA LYS LYS CYS ARG LYS PHE SEQRES 13 A 158 LEU ASN HET ZN A4001 1 HET SAH A4002 26 HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 ZN ZN 2+ FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 HOH *142(H2 O) HELIX 1 AA1 PRO A 3815 ARG A 3821 1 7 HELIX 2 AA2 HIS A 3822 ALA A 3830 1 9 HELIX 3 AA3 LEU A 3867 LYS A 3878 1 12 HELIX 4 AA4 ASN A 3900 ILE A 3905 5 6 SHEET 1 AA1 4 VAL A3831 ARG A3835 0 SHEET 2 AA1 4 ARG A3841 CYS A3845 -1 O PHE A3844 N GLY A3832 SHEET 3 AA1 4 GLU A3939 TYR A3942 -1 O LEU A3940 N LEU A3843 SHEET 4 AA1 4 ASN A3906 HIS A3907 1 N ASN A3906 O TYR A3942 SHEET 1 AA2 3 MET A3854 GLU A3857 0 SHEET 2 AA2 3 GLN A3923 ALA A3930 -1 O ILE A3928 N VAL A3855 SHEET 3 AA2 3 CYS A3913 ILE A3920 -1 N ILE A3918 O HIS A3925 SHEET 1 AA3 3 ILE A3861 ARG A3864 0 SHEET 2 AA3 3 GLU A3891 ASP A3894 -1 O VAL A3892 N ILE A3863 SHEET 3 AA3 3 MET A3884 ARG A3886 -1 N PHE A3885 O VAL A3893 LINK SG CYS A3909 ZN ZN A4001 1555 1555 2.39 LINK SG CYS A3957 ZN ZN A4001 1555 1555 2.12 LINK SG CYS A3959 ZN ZN A4001 1555 1555 2.50 LINK SG CYS A3964 ZN ZN A4001 1555 1555 2.26 LINK ZN ZN A4001 O HOH A4109 1555 1555 2.68 SITE 1 AC1 5 CYS A3909 CYS A3957 CYS A3959 CYS A3964 SITE 2 AC1 5 HOH A4109 SITE 1 AC2 18 ILE A3838 HIS A3839 GLY A3840 ARG A3841 SITE 2 AC2 18 TYR A3883 ARG A3903 PHE A3904 ASN A3906 SITE 3 AC2 18 HIS A3907 TYR A3944 PRO A3956 CYS A3957 SITE 4 AC2 18 ASN A3958 HOH A4122 HOH A4135 HOH A4149 SITE 5 AC2 18 HOH A4169 HOH A4187 CRYST1 54.574 54.574 104.656 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018324 0.010579 0.000000 0.00000 SCALE2 0.000000 0.021158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009555 0.00000