HEADER RNA BINDING PROTEIN 04-DEC-15 5F5H TITLE X-RAY STRUCTURE OF ROQUIN ROQ DOMAIN IN COMPLEX WITH OX40 HEXA-LOOP TITLE 2 RNA MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ROQ DOMAIN, UNP RESIDUES 147-326; COMPND 5 SYNONYM: ROQUIN,PROTEIN SANROQUE,RING FINGER AND C3H ZINC FINGER COMPND 6 PROTEIN 1,RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(P*CP*CP*AP*CP*AP*CP*CP*GP*UP*UP*CP*UP*AP*GP*GP*UP*GP*CP*UP*GP*G)- COMPND 12 3'); COMPND 13 CHAIN: C, D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RC3H1, GM551, KIAA2025; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS ROQ DOMAIN, WINGED-HELIX DOMAIN, RNA BINDING PROTEIN, OX40 MRNA EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,A.SCHLUNDT,M.SATTLER,D.NIESSING REVDAT 2 10-JAN-24 5F5H 1 REMARK REVDAT 1 06-APR-16 5F5H 0 JRNL AUTH R.JANOWSKI,G.A.HEINZ,A.SCHLUNDT,N.WOMMELSDORF,S.BRENNER, JRNL AUTH 2 A.R.GRUBER,M.BLANK,T.BUCH,R.BUHMANN,M.ZAVOLAN,D.NIESSING, JRNL AUTH 3 V.HEISSMEYER,M.SATTLER JRNL TITL ROQUIN RECOGNIZES A NON-CANONICAL HEXALOOP STRUCTURE IN THE JRNL TITL 2 3'-UTR OF OX40. JRNL REF NAT COMMUN V. 7 11032 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27010430 JRNL DOI 10.1038/NCOMMS11032 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 21018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1499 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2395 REMARK 3 NUCLEIC ACID ATOMS : 888 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -2.47000 REMARK 3 B33 (A**2) : 2.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.333 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3438 ; 0.006 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 2831 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4834 ; 1.068 ; 1.752 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6555 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 5.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;33.368 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;13.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3243 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1202 ; 0.527 ; 3.264 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1201 ; 0.527 ; 3.263 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1500 ; 0.933 ; 4.893 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1501 ; 0.933 ; 4.894 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2236 ; 0.499 ; 3.405 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2236 ; 0.498 ; 3.405 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3333 ; 0.843 ; 5.093 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3976 ; 2.876 ;28.834 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3965 ; 2.858 ;28.785 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 94.8448 21.4426 48.7714 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.1012 REMARK 3 T33: 0.1228 T12: 0.0184 REMARK 3 T13: -0.0109 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.8758 L22: 6.1178 REMARK 3 L33: 2.7748 L12: 1.2100 REMARK 3 L13: -0.3071 L23: 0.3036 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0635 S13: -0.4900 REMARK 3 S21: -0.0678 S22: 0.0345 S23: 0.2245 REMARK 3 S31: 0.1940 S32: -0.1434 S33: -0.0342 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): 119.0241 -1.4908 37.1651 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.1036 REMARK 3 T33: 0.0837 T12: 0.0257 REMARK 3 T13: -0.0023 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.1134 L22: 6.4396 REMARK 3 L33: 2.2319 L12: -0.1516 REMARK 3 L13: 0.0421 L23: 0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0755 S13: 0.4969 REMARK 3 S21: -0.0481 S22: -0.0826 S23: -0.0036 REMARK 3 S31: -0.1720 S32: -0.1041 S33: 0.0781 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 22 REMARK 3 ORIGIN FOR THE GROUP (A): 96.1767 25.4634 66.7752 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.1356 REMARK 3 T33: 0.0877 T12: -0.0455 REMARK 3 T13: 0.0008 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 2.3014 L22: 3.1282 REMARK 3 L33: 5.4430 L12: -2.1445 REMARK 3 L13: -0.4402 L23: 1.9258 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.1081 S13: 0.0272 REMARK 3 S21: 0.3075 S22: 0.0317 S23: 0.1491 REMARK 3 S31: 0.1618 S32: -0.3037 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 22 REMARK 3 ORIGIN FOR THE GROUP (A): 120.4123 -6.6727 55.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.2335 REMARK 3 T33: 0.2107 T12: 0.0106 REMARK 3 T13: -0.0491 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.6854 L22: 1.3158 REMARK 3 L33: 5.0964 L12: -1.1263 REMARK 3 L13: -0.1734 L23: -0.9534 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.2432 S13: 0.1550 REMARK 3 S21: 0.2420 S22: -0.0638 S23: -0.3926 REMARK 3 S31: -0.1567 S32: 0.4405 S33: 0.0279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5F5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000211630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25363 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, BIS-TRIS, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.83000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 ILE A 152 REMARK 465 ARG A 153 REMARK 465 ALA A 154 REMARK 465 MET A 155 REMARK 465 ARG A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ARG A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 GLU A 163 REMARK 465 ARG A 164 REMARK 465 THR A 165 REMARK 465 VAL A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 ILE A 170 REMARK 465 LEU A 171 REMARK 465 GLN A 172 REMARK 465 HIS A 173 REMARK 465 GLN A 174 REMARK 465 ASN A 175 REMARK 465 PRO A 176 REMARK 465 GLN A 177 REMARK 465 THR A 326 REMARK 465 GLU B 147 REMARK 465 GLU B 148 REMARK 465 GLU B 149 REMARK 465 GLY B 150 REMARK 465 ARG B 151 REMARK 465 ILE B 152 REMARK 465 ARG B 153 REMARK 465 ALA B 154 REMARK 465 MET B 155 REMARK 465 ARG B 156 REMARK 465 ALA B 157 REMARK 465 ALA B 158 REMARK 465 ARG B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 GLU B 163 REMARK 465 ARG B 164 REMARK 465 THR B 165 REMARK 465 VAL B 166 REMARK 465 THR B 167 REMARK 465 GLU B 168 REMARK 465 LEU B 169 REMARK 465 ILE B 170 REMARK 465 LEU B 171 REMARK 465 GLN B 172 REMARK 465 HIS B 173 REMARK 465 THR B 326 REMARK 465 U C 1 REMARK 465 U D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G D 21 C2' - C3' - O3' ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 253 37.62 71.34 REMARK 500 GLU A 262 -54.16 71.24 REMARK 500 SER B 253 35.27 71.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 DBREF 5F5H A 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 5F5H B 147 326 UNP Q4VGL6 RC3H1_MOUSE 147 326 DBREF 5F5H C 1 22 PDB 5F5H 5F5H 1 22 DBREF 5F5H D 1 22 PDB 5F5H 5F5H 1 22 SEQRES 1 A 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 A 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 A 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 A 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 A 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 A 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 A 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 A 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 A 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 A 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 A 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 A 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 A 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 A 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 B 180 GLU GLU GLU GLY ARG ILE ARG ALA MET ARG ALA ALA ARG SEQRES 2 B 180 SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU GLN SEQRES 3 B 180 HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP ALA SEQRES 4 B 180 ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO ALA SEQRES 5 B 180 MET GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA LEU SEQRES 6 B 180 GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL LEU SEQRES 7 B 180 PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN ALA SEQRES 8 B 180 SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU TYR SEQRES 9 B 180 ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU ASP SEQRES 10 B 180 SER SER LEU MET GLN LEU LYS GLU GLU PHE ARG THR TYR SEQRES 11 B 180 GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL GLN SEQRES 12 B 180 ILE ALA MET GLU ALA GLY LEU ARG ILE ALA PRO ASP GLN SEQRES 13 B 180 TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SER SEQRES 14 B 180 HIS MET GLN SER ILE ILE ASP LYS LEU GLN THR SEQRES 1 C 22 U C C A C A C C G U U C U SEQRES 2 C 22 A G G U G C U G G SEQRES 1 D 22 U C C A C A C C G U U C U SEQRES 2 D 22 A G G U G C U G G HET GOL A 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *99(H2 O) HELIX 1 AA1 GLN A 178 ARG A 190 1 13 HELIX 2 AA2 GLY A 196 GLU A 212 1 17 HELIX 3 AA3 ARG A 219 GLU A 231 1 13 HELIX 4 AA4 SER A 238 ALA A 252 1 15 HELIX 5 AA5 GLU A 271 ARG A 274 5 4 HELIX 6 AA6 THR A 275 ALA A 294 1 20 HELIX 7 AA7 ALA A 299 GLY A 309 1 11 HELIX 8 AA8 HIS A 313 GLN A 325 1 13 HELIX 9 AA9 ASN B 175 ARG B 190 1 16 HELIX 10 AB1 GLY B 196 GLU B 212 1 17 HELIX 11 AB2 ARG B 219 GLU B 231 1 13 HELIX 12 AB3 SER B 238 ALA B 252 1 15 HELIX 13 AB4 GLU B 271 ARG B 274 5 4 HELIX 14 AB5 THR B 275 GLY B 295 1 21 HELIX 15 AB6 ALA B 299 GLY B 309 1 11 HELIX 16 AB7 HIS B 313 GLN B 325 1 13 SHEET 1 AA1 3 LEU A 217 SER A 218 0 SHEET 2 AA1 3 LEU A 266 LEU A 269 -1 O MET A 267 N LEU A 217 SHEET 3 AA1 3 PHE A 255 THR A 258 -1 N LYS A 256 O GLN A 268 SHEET 1 AA2 3 LEU B 217 SER B 218 0 SHEET 2 AA2 3 LEU B 266 LEU B 269 -1 O MET B 267 N LEU B 217 SHEET 3 AA2 3 PHE B 255 THR B 258 -1 N THR B 258 O LEU B 266 SITE 1 AC1 1 HOH A 511 CRYST1 89.660 115.790 42.610 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023469 0.00000