HEADER OXIDOREDUCTASE 04-DEC-15 5F5I TITLE CRYSTAL STRUCTURE OF HUMAN JMJD2A COMPLEXED WITH KDOOA011340 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: OXIDOREDUCTASE-2OG; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DOUBLE-STRANDED BETA HELIX, DEMETHYLASE, OXYGENASE, OXIDOREDUCTASE, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,M.VOLLMAR,L.CRAWLEY,A.SZYKOWSKA,C.GILEADI,C.JOHANSSON, AUTHOR 2 K.ENGLAND,H.YANG,N.BURGESS-BROWN,P.BRENNAN,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 3 A.EDWARDS,U.OPPERMANN,F.VON DELFT,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (SGC) REVDAT 4 10-JAN-24 5F5I 1 REMARK LINK REVDAT 3 14-SEP-16 5F5I 1 AUTHOR REVDAT 2 27-APR-16 5F5I 1 JRNL REVDAT 1 30-DEC-15 5F5I 0 JRNL AUTH V.BAVETSIAS,R.M.LANIGAN,G.F.RUDA,B.ATRASH,M.G.MCLAUGHLIN, JRNL AUTH 2 A.TUMBER,N.Y.MOK,Y.V.LE BIHAN,S.DEMPSTER,K.J.BOXALL, JRNL AUTH 3 F.JEGANATHAN,S.B.HATCH,P.SAVITSKY,S.VELUPILLAI,T.KROJER, JRNL AUTH 4 K.S.ENGLAND,J.SEJBERG,C.THAI,A.DONOVAN,A.PAL,G.SCOZZAFAVA, JRNL AUTH 5 J.M.BENNETT,A.KAWAMURA,C.JOHANSSON,A.SZYKOWSKA,C.GILEADI, JRNL AUTH 6 N.A.BURGESS-BROWN,F.VON DELFT,U.OPPERMANN,Z.WALTERS, JRNL AUTH 7 J.SHIPLEY,F.I.RAYNAUD,S.M.WESTAWAY,R.K.PRINJHA,O.FEDOROV, JRNL AUTH 8 R.BURKE,C.J.SCHOFIELD,I.M.WESTWOOD,C.BOUNTRA,S.MULLER, JRNL AUTH 9 R.L.VAN MONTFORT,P.E.BRENNAN,J.BLAGG JRNL TITL 8-SUBSTITUTED PYRIDO[3,4-D]PYRIMIDIN-4(3H)-ONE DERIVATIVES JRNL TITL 2 AS POTENT, CELL PERMEABLE, KDM4 (JMJD2) AND KDM5 (JARID1) JRNL TITL 3 HISTONE LYSINE DEMETHYLASE INHIBITORS. JRNL REF J.MED.CHEM. V. 59 1388 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26741168 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01635 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.922 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.827 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5832 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5320 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7915 ; 1.212 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12239 ; 1.006 ; 2.990 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 5.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;32.119 ;23.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 937 ;15.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 812 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6586 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1453 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2762 ; 0.830 ; 2.787 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2761 ; 0.830 ; 2.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3450 ; 1.515 ; 4.173 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 8 352 B 8 352 39844 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -44.8060 -27.3364 -31.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.3999 REMARK 3 T33: 0.4852 T12: -0.0553 REMARK 3 T13: -0.3551 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 5.6308 L22: 2.0072 REMARK 3 L33: 1.5869 L12: 3.3105 REMARK 3 L13: 0.7835 L23: 0.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.1703 S12: 0.3731 S13: 0.5079 REMARK 3 S21: -0.0373 S22: 0.2790 S23: 0.4431 REMARK 3 S31: 0.5969 S32: -0.4860 S33: -0.4494 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9490 -21.3644 -30.9631 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.3236 REMARK 3 T33: 0.2429 T12: 0.1219 REMARK 3 T13: 0.0807 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 1.1890 L22: 1.0765 REMARK 3 L33: 0.6737 L12: -0.4091 REMARK 3 L13: 0.4667 L23: -0.1391 REMARK 3 S TENSOR REMARK 3 S11: 0.3358 S12: 0.3716 S13: 0.0001 REMARK 3 S21: -0.2140 S22: -0.4176 S23: -0.0560 REMARK 3 S31: 0.2346 S32: 0.2708 S33: 0.0818 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9588 -28.0045 -26.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.1401 T22: 0.3580 REMARK 3 T33: 0.2831 T12: 0.1523 REMARK 3 T13: 0.0926 T23: 0.1214 REMARK 3 L TENSOR REMARK 3 L11: 3.4259 L22: 2.2329 REMARK 3 L33: 1.8612 L12: -0.8802 REMARK 3 L13: 1.0165 L23: -0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.4008 S12: 0.6311 S13: 0.0673 REMARK 3 S21: 0.0397 S22: -0.4230 S23: -0.3430 REMARK 3 S31: 0.3658 S32: 0.5204 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): -27.7742 -15.2021 -26.7822 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.2704 REMARK 3 T33: 0.3409 T12: 0.0502 REMARK 3 T13: 0.0614 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 2.1175 L22: 0.3934 REMARK 3 L33: 0.5178 L12: -0.7133 REMARK 3 L13: 0.5717 L23: -0.2411 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.3337 S13: 0.2320 REMARK 3 S21: -0.1346 S22: -0.2471 S23: -0.0341 REMARK 3 S31: -0.0558 S32: 0.2940 S33: 0.1140 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4088 -27.4539 -18.6434 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.2151 REMARK 3 T33: 0.3404 T12: -0.0016 REMARK 3 T13: 0.0516 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.4773 L22: 0.7265 REMARK 3 L33: 1.5074 L12: -0.9517 REMARK 3 L13: 0.8697 L23: -0.7920 REMARK 3 S TENSOR REMARK 3 S11: 0.1765 S12: 0.1559 S13: -0.0683 REMARK 3 S21: -0.0609 S22: -0.2061 S23: 0.0830 REMARK 3 S31: 0.0370 S32: 0.0960 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): -38.7667 -14.1957 -12.8146 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.1409 REMARK 3 T33: 0.3660 T12: -0.0163 REMARK 3 T13: 0.0300 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 1.6220 L22: 1.9679 REMARK 3 L33: 3.2589 L12: -0.7489 REMARK 3 L13: 1.7320 L23: 0.2823 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.1735 S13: 0.1656 REMARK 3 S21: 0.0868 S22: -0.0503 S23: 0.1074 REMARK 3 S31: -0.1894 S32: -0.1845 S33: 0.0469 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 318 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): -50.8569 -14.0844 -12.5441 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.2375 REMARK 3 T33: 0.4017 T12: 0.0352 REMARK 3 T13: 0.0604 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 0.9497 L22: 4.2769 REMARK 3 L33: 4.3735 L12: -1.0574 REMARK 3 L13: -0.7883 L23: 1.6526 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.0266 S13: 0.1414 REMARK 3 S21: 0.1601 S22: -0.1637 S23: 0.1565 REMARK 3 S31: -0.0419 S32: -0.6093 S33: 0.1219 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1923 -55.0168 -8.1817 REMARK 3 T TENSOR REMARK 3 T11: 0.3312 T22: 0.0797 REMARK 3 T33: 0.2500 T12: -0.0584 REMARK 3 T13: 0.0506 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.6153 L22: 2.3999 REMARK 3 L33: 1.7684 L12: 0.6245 REMARK 3 L13: -0.5200 L23: -1.1868 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.1246 S13: 0.2413 REMARK 3 S21: -0.4262 S22: -0.0512 S23: -0.4420 REMARK 3 S31: 0.5265 S32: -0.0790 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): -51.2125 -53.3822 -0.8723 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.5449 REMARK 3 T33: 0.1867 T12: -0.2371 REMARK 3 T13: -0.1142 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 2.2059 L22: 1.3700 REMARK 3 L33: 4.3113 L12: -0.5798 REMARK 3 L13: -2.0577 L23: -0.4714 REMARK 3 S TENSOR REMARK 3 S11: -0.3147 S12: 0.0996 S13: 0.3622 REMARK 3 S21: -0.1672 S22: 0.6959 S23: -0.1353 REMARK 3 S31: 0.7129 S32: -1.0820 S33: -0.3812 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 226 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8067 -54.4741 4.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1770 REMARK 3 T33: 0.3628 T12: -0.1034 REMARK 3 T13: -0.0868 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.6945 L22: 0.5892 REMARK 3 L33: 1.5694 L12: 0.1841 REMARK 3 L13: -0.7461 L23: -0.7602 REMARK 3 S TENSOR REMARK 3 S11: -0.1472 S12: -0.0868 S13: 0.0926 REMARK 3 S21: -0.1500 S22: 0.2351 S23: -0.1756 REMARK 3 S31: 0.2870 S32: -0.2229 S33: -0.0879 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 227 B 291 REMARK 3 ORIGIN FOR THE GROUP (A): -40.7431 -48.6125 6.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.2137 REMARK 3 T33: 0.3211 T12: -0.0614 REMARK 3 T13: -0.0599 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.5808 L22: 0.5269 REMARK 3 L33: 1.6706 L12: 0.6955 REMARK 3 L13: -0.4066 L23: -0.2358 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: -0.0947 S13: 0.1092 REMARK 3 S21: -0.1240 S22: 0.1397 S23: -0.0419 REMARK 3 S31: 0.1307 S32: -0.2061 S33: -0.0427 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 292 B 353 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1085 -61.9341 12.9247 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1444 REMARK 3 T33: 0.5839 T12: 0.0401 REMARK 3 T13: -0.0459 T23: 0.0964 REMARK 3 L TENSOR REMARK 3 L11: 2.0903 L22: 1.8702 REMARK 3 L33: 1.1417 L12: -1.9657 REMARK 3 L13: 1.4728 L23: -1.3976 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0273 S13: 0.0334 REMARK 3 S21: -0.0636 S22: -0.0327 S23: -0.1284 REMARK 3 S31: 0.1582 S32: 0.0480 S33: -0.0142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5F5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 54.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2OQ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.9 , 0.15M AMMONIUM REMARK 280 SULFATE , 13% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 PHE A 353 REMARK 465 LEU A 354 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 SER A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 GLY B 165 REMARK 465 ILE B 166 REMARK 465 THR B 167 REMARK 465 ILE B 168 REMARK 465 GLU B 169 REMARK 465 GLY B 170 REMARK 465 LEU B 354 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 SER B 357 REMARK 465 GLU B 358 REMARK 465 LEU B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 ASP B 311 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 60.64 38.39 REMARK 500 SER A 112 -72.63 -106.89 REMARK 500 ASN A 128 66.36 38.96 REMARK 500 LYS A 143 -33.00 -36.96 REMARK 500 ALA A 236 57.73 -144.96 REMARK 500 ASN B 9 121.10 -177.55 REMARK 500 SER B 112 -73.01 -106.93 REMARK 500 ASN B 128 65.21 38.94 REMARK 500 LYS B 143 -31.45 -39.12 REMARK 500 ALA B 236 57.88 -144.75 REMARK 500 GLU B 352 -40.70 -29.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE1 115.4 REMARK 620 3 HIS A 276 NE2 91.1 87.5 REMARK 620 4 5V1 A 504 N1 86.6 156.3 101.4 REMARK 620 5 5V1 A 504 N2 83.9 100.0 172.2 72.5 REMARK 620 6 HOH A 610 O 161.3 81.1 80.6 78.8 102.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 103.6 REMARK 620 3 CYS A 306 SG 114.2 117.0 REMARK 620 4 CYS A 308 SG 107.3 97.6 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE1 109.9 REMARK 620 3 HIS B 276 NE2 89.4 84.2 REMARK 620 4 5V1 B 504 N1 89.6 158.4 105.9 REMARK 620 5 5V1 B 504 N2 89.2 97.4 178.1 72.9 REMARK 620 6 HOH B 613 O 161.6 83.6 79.2 79.8 101.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 106.8 REMARK 620 3 CYS B 306 SG 117.6 116.3 REMARK 620 4 CYS B 308 SG 107.5 94.5 111.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5V1 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5V1 B 504 DBREF 5F5I A 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 5F5I B 1 359 UNP O75164 KDM4A_HUMAN 1 359 SEQADV 5F5I TYR A -3 UNP O75164 EXPRESSION TAG SEQADV 5F5I PHE A -2 UNP O75164 EXPRESSION TAG SEQADV 5F5I GLN A -1 UNP O75164 EXPRESSION TAG SEQADV 5F5I SER A 0 UNP O75164 EXPRESSION TAG SEQADV 5F5I TYR B -3 UNP O75164 EXPRESSION TAG SEQADV 5F5I PHE B -2 UNP O75164 EXPRESSION TAG SEQADV 5F5I GLN B -1 UNP O75164 EXPRESSION TAG SEQADV 5F5I SER B 0 UNP O75164 EXPRESSION TAG SEQRES 1 A 363 TYR PHE GLN SER MET ALA SER GLU SER GLU THR LEU ASN SEQRES 2 A 363 PRO SER ALA ARG ILE MET THR PHE TYR PRO THR MET GLU SEQRES 3 A 363 GLU PHE ARG ASN PHE SER ARG TYR ILE ALA TYR ILE GLU SEQRES 4 A 363 SER GLN GLY ALA HIS ARG ALA GLY LEU ALA LYS VAL VAL SEQRES 5 A 363 PRO PRO LYS GLU TRP LYS PRO ARG ALA SER TYR ASP ASP SEQRES 6 A 363 ILE ASP ASP LEU VAL ILE PRO ALA PRO ILE GLN GLN LEU SEQRES 7 A 363 VAL THR GLY GLN SER GLY LEU PHE THR GLN TYR ASN ILE SEQRES 8 A 363 GLN LYS LYS ALA MET THR VAL ARG GLU PHE ARG LYS ILE SEQRES 9 A 363 ALA ASN SER ASP LYS TYR CYS THR PRO ARG TYR SER GLU SEQRES 10 A 363 PHE GLU GLU LEU GLU ARG LYS TYR TRP LYS ASN LEU THR SEQRES 11 A 363 PHE ASN PRO PRO ILE TYR GLY ALA ASP VAL ASN GLY THR SEQRES 12 A 363 LEU TYR GLU LYS HIS VAL ASP GLU TRP ASN ILE GLY ARG SEQRES 13 A 363 LEU ARG THR ILE LEU ASP LEU VAL GLU LYS GLU SER GLY SEQRES 14 A 363 ILE THR ILE GLU GLY VAL ASN THR PRO TYR LEU TYR PHE SEQRES 15 A 363 GLY MET TRP LYS THR SER PHE ALA TRP HIS THR GLU ASP SEQRES 16 A 363 MET ASP LEU TYR SER ILE ASN TYR LEU HIS PHE GLY GLU SEQRES 17 A 363 PRO LYS SER TRP TYR SER VAL PRO PRO GLU HIS GLY LYS SEQRES 18 A 363 ARG LEU GLU ARG LEU ALA LYS GLY PHE PHE PRO GLY SER SEQRES 19 A 363 ALA GLN SER CYS GLU ALA PHE LEU ARG HIS LYS MET THR SEQRES 20 A 363 LEU ILE SER PRO LEU MET LEU LYS LYS TYR GLY ILE PRO SEQRES 21 A 363 PHE ASP LYS VAL THR GLN GLU ALA GLY GLU PHE MET ILE SEQRES 22 A 363 THR PHE PRO TYR GLY TYR HIS ALA GLY PHE ASN HIS GLY SEQRES 23 A 363 PHE ASN CYS ALA GLU SER THR ASN PHE ALA THR ARG ARG SEQRES 24 A 363 TRP ILE GLU TYR GLY LYS GLN ALA VAL LEU CYS SER CYS SEQRES 25 A 363 ARG LYS ASP MET VAL LYS ILE SER MET ASP VAL PHE VAL SEQRES 26 A 363 ARG LYS PHE GLN PRO GLU ARG TYR LYS LEU TRP LYS ALA SEQRES 27 A 363 GLY LYS ASP ASN THR VAL ILE ASP HIS THR LEU PRO THR SEQRES 28 A 363 PRO GLU ALA ALA GLU PHE LEU LYS GLU SER GLU LEU SEQRES 1 B 363 TYR PHE GLN SER MET ALA SER GLU SER GLU THR LEU ASN SEQRES 2 B 363 PRO SER ALA ARG ILE MET THR PHE TYR PRO THR MET GLU SEQRES 3 B 363 GLU PHE ARG ASN PHE SER ARG TYR ILE ALA TYR ILE GLU SEQRES 4 B 363 SER GLN GLY ALA HIS ARG ALA GLY LEU ALA LYS VAL VAL SEQRES 5 B 363 PRO PRO LYS GLU TRP LYS PRO ARG ALA SER TYR ASP ASP SEQRES 6 B 363 ILE ASP ASP LEU VAL ILE PRO ALA PRO ILE GLN GLN LEU SEQRES 7 B 363 VAL THR GLY GLN SER GLY LEU PHE THR GLN TYR ASN ILE SEQRES 8 B 363 GLN LYS LYS ALA MET THR VAL ARG GLU PHE ARG LYS ILE SEQRES 9 B 363 ALA ASN SER ASP LYS TYR CYS THR PRO ARG TYR SER GLU SEQRES 10 B 363 PHE GLU GLU LEU GLU ARG LYS TYR TRP LYS ASN LEU THR SEQRES 11 B 363 PHE ASN PRO PRO ILE TYR GLY ALA ASP VAL ASN GLY THR SEQRES 12 B 363 LEU TYR GLU LYS HIS VAL ASP GLU TRP ASN ILE GLY ARG SEQRES 13 B 363 LEU ARG THR ILE LEU ASP LEU VAL GLU LYS GLU SER GLY SEQRES 14 B 363 ILE THR ILE GLU GLY VAL ASN THR PRO TYR LEU TYR PHE SEQRES 15 B 363 GLY MET TRP LYS THR SER PHE ALA TRP HIS THR GLU ASP SEQRES 16 B 363 MET ASP LEU TYR SER ILE ASN TYR LEU HIS PHE GLY GLU SEQRES 17 B 363 PRO LYS SER TRP TYR SER VAL PRO PRO GLU HIS GLY LYS SEQRES 18 B 363 ARG LEU GLU ARG LEU ALA LYS GLY PHE PHE PRO GLY SER SEQRES 19 B 363 ALA GLN SER CYS GLU ALA PHE LEU ARG HIS LYS MET THR SEQRES 20 B 363 LEU ILE SER PRO LEU MET LEU LYS LYS TYR GLY ILE PRO SEQRES 21 B 363 PHE ASP LYS VAL THR GLN GLU ALA GLY GLU PHE MET ILE SEQRES 22 B 363 THR PHE PRO TYR GLY TYR HIS ALA GLY PHE ASN HIS GLY SEQRES 23 B 363 PHE ASN CYS ALA GLU SER THR ASN PHE ALA THR ARG ARG SEQRES 24 B 363 TRP ILE GLU TYR GLY LYS GLN ALA VAL LEU CYS SER CYS SEQRES 25 B 363 ARG LYS ASP MET VAL LYS ILE SER MET ASP VAL PHE VAL SEQRES 26 B 363 ARG LYS PHE GLN PRO GLU ARG TYR LYS LEU TRP LYS ALA SEQRES 27 B 363 GLY LYS ASP ASN THR VAL ILE ASP HIS THR LEU PRO THR SEQRES 28 B 363 PRO GLU ALA ALA GLU PHE LEU LYS GLU SER GLU LEU HET NI A 501 1 HET ZN A 502 1 HET SO4 A 503 5 HET 5V1 A 504 18 HET NI B 501 1 HET ZN B 502 1 HET SO4 B 503 5 HET 5V1 B 504 18 HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM 5V1 2-[[(PHENYLMETHYL)AMINO]METHYL]PYRIDINE-4-CARBOXYLIC HETNAM 2 5V1 ACID FORMUL 3 NI 2(NI 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 5V1 2(C14 H14 N2 O2) FORMUL 11 HOH *152(H2 O) HELIX 1 AA1 THR A 20 ARG A 25 1 6 HELIX 2 AA2 ASN A 26 GLN A 37 1 12 HELIX 3 AA3 GLY A 38 ALA A 42 5 5 HELIX 4 AA4 VAL A 94 SER A 103 1 10 HELIX 5 AA5 GLU A 113 LEU A 125 1 13 HELIX 6 AA6 THR A 155 LEU A 157 5 3 HELIX 7 AA7 ASP A 158 GLY A 165 1 8 HELIX 8 AA8 GLU A 190 LEU A 194 5 5 HELIX 9 AA9 PRO A 212 GLU A 214 5 3 HELIX 10 AB1 HIS A 215 PHE A 227 1 13 HELIX 11 AB2 PHE A 227 CYS A 234 1 8 HELIX 12 AB3 ALA A 236 LYS A 241 5 6 HELIX 13 AB4 SER A 246 TYR A 253 1 8 HELIX 14 AB5 ARG A 295 ALA A 303 1 9 HELIX 15 AB6 MET A 317 GLN A 325 1 9 HELIX 16 AB7 ARG A 328 ALA A 334 1 7 HELIX 17 AB8 THR A 347 GLU A 352 5 6 HELIX 18 AB9 ASN B 9 ARG B 13 5 5 HELIX 19 AC1 THR B 20 ARG B 25 1 6 HELIX 20 AC2 ASN B 26 GLN B 37 1 12 HELIX 21 AC3 GLY B 38 ALA B 42 5 5 HELIX 22 AC4 VAL B 94 SER B 103 1 10 HELIX 23 AC5 GLU B 113 LEU B 125 1 13 HELIX 24 AC6 THR B 155 LEU B 157 5 3 HELIX 25 AC7 ASP B 158 SER B 164 1 7 HELIX 26 AC8 GLU B 190 LEU B 194 5 5 HELIX 27 AC9 PRO B 212 GLU B 214 5 3 HELIX 28 AD1 HIS B 215 PHE B 227 1 13 HELIX 29 AD2 PHE B 227 CYS B 234 1 8 HELIX 30 AD3 ALA B 236 LYS B 241 5 6 HELIX 31 AD4 SER B 246 TYR B 253 1 8 HELIX 32 AD5 ARG B 295 ALA B 303 1 9 HELIX 33 AD6 MET B 317 GLN B 325 1 9 HELIX 34 AD7 ARG B 328 ALA B 334 1 7 HELIX 35 AD8 THR B 347 ALA B 351 5 5 SHEET 1 AA110 THR A 16 PHE A 17 0 SHEET 2 AA110 LEU A 44 VAL A 47 1 O LYS A 46 N PHE A 17 SHEET 3 AA110 PHE A 267 THR A 270 -1 O ILE A 269 N ALA A 45 SHEET 4 AA110 TYR A 195 GLY A 203 -1 N ASN A 198 O MET A 268 SHEET 5 AA110 ASN A 284 PHE A 291 -1 O GLU A 287 N TYR A 199 SHEET 6 AA110 TYR A 175 GLY A 179 -1 N TYR A 177 O ALA A 286 SHEET 7 AA110 ILE A 131 ASN A 137 -1 N GLY A 133 O PHE A 178 SHEET 8 AA110 ILE A 71 GLN A 78 -1 N ILE A 71 O TYR A 132 SHEET 9 AA110 LEU A 81 GLN A 88 -1 O TYR A 85 N LEU A 74 SHEET 10 AA110 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 AA2 2 VAL A 66 ILE A 67 0 SHEET 2 AA2 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 AA3 4 SER A 184 HIS A 188 0 SHEET 2 AA3 4 TYR A 275 ASN A 280 -1 O GLY A 278 N PHE A 185 SHEET 3 AA3 4 LYS A 206 VAL A 211 -1 N TYR A 209 O ALA A 277 SHEET 4 AA3 4 ASP A 258 GLN A 262 -1 O GLN A 262 N LYS A 206 SHEET 1 AA410 THR B 16 PHE B 17 0 SHEET 2 AA410 LEU B 44 VAL B 47 1 O LYS B 46 N PHE B 17 SHEET 3 AA410 PHE B 267 THR B 270 -1 O ILE B 269 N ALA B 45 SHEET 4 AA410 TYR B 195 GLY B 203 -1 N ASN B 198 O MET B 268 SHEET 5 AA410 ASN B 284 PHE B 291 -1 O GLU B 287 N TYR B 199 SHEET 6 AA410 TYR B 175 GLY B 179 -1 N TYR B 177 O ALA B 286 SHEET 7 AA410 ILE B 131 ASN B 137 -1 N GLY B 133 O PHE B 178 SHEET 8 AA410 ILE B 71 GLN B 78 -1 N ILE B 71 O TYR B 132 SHEET 9 AA410 LEU B 81 GLN B 88 -1 O TYR B 85 N LEU B 74 SHEET 10 AA410 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 AA5 2 VAL B 66 ILE B 67 0 SHEET 2 AA5 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 AA6 4 SER B 184 HIS B 188 0 SHEET 2 AA6 4 TYR B 275 ASN B 280 -1 O GLY B 278 N PHE B 185 SHEET 3 AA6 4 LYS B 206 VAL B 211 -1 N TYR B 209 O ALA B 277 SHEET 4 AA6 4 ASP B 258 GLN B 262 -1 O GLN B 262 N LYS B 206 LINK NE2 HIS A 188 NI NI A 501 1555 1555 2.50 LINK OE1 GLU A 190 NI NI A 501 1555 1555 2.14 LINK SG CYS A 234 ZN ZN A 502 1555 1555 2.28 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.21 LINK NE2 HIS A 276 NI NI A 501 1555 1555 2.45 LINK SG CYS A 306 ZN ZN A 502 1555 1555 2.08 LINK SG CYS A 308 ZN ZN A 502 1555 1555 2.24 LINK NI NI A 501 N1 5V1 A 504 1555 1555 2.30 LINK NI NI A 501 N2 5V1 A 504 1555 1555 2.39 LINK NI NI A 501 O HOH A 610 1555 1555 2.31 LINK NE2 HIS B 188 NI NI B 501 1555 1555 2.53 LINK OE1 GLU B 190 NI NI B 501 1555 1555 2.24 LINK SG CYS B 234 ZN ZN B 502 1555 1555 2.19 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.22 LINK NE2 HIS B 276 NI NI B 501 1555 1555 2.50 LINK SG CYS B 306 ZN ZN B 502 1555 1555 2.10 LINK SG CYS B 308 ZN ZN B 502 1555 1555 2.32 LINK NI NI B 501 N1 5V1 B 504 1555 1555 2.20 LINK NI NI B 501 N2 5V1 B 504 1555 1555 2.48 LINK NI NI B 501 O HOH B 613 1555 1555 2.35 SITE 1 AC1 5 HIS A 188 GLU A 190 HIS A 276 5V1 A 504 SITE 2 AC1 5 HOH A 610 SITE 1 AC2 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC3 5 PHE A 227 PRO A 228 GLY A 229 SER A 230 SITE 2 AC3 5 LYS B 105 SITE 1 AC4 15 TYR A 132 GLY A 170 TYR A 175 TYR A 177 SITE 2 AC4 15 PHE A 185 HIS A 188 GLU A 190 ASN A 198 SITE 3 AC4 15 LYS A 206 TRP A 208 HIS A 276 SER A 288 SITE 4 AC4 15 ASN A 290 NI A 501 HOH A 610 SITE 1 AC5 5 HIS B 188 GLU B 190 HIS B 276 5V1 B 504 SITE 2 AC5 5 HOH B 613 SITE 1 AC6 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 SITE 1 AC7 6 LYS A 105 PHE B 227 PRO B 228 GLY B 229 SITE 2 AC7 6 SER B 230 HOH B 649 SITE 1 AC8 14 TYR B 132 TYR B 175 TYR B 177 PHE B 185 SITE 2 AC8 14 HIS B 188 GLU B 190 ASN B 198 LYS B 206 SITE 3 AC8 14 TRP B 208 SER B 288 ASN B 290 NI B 501 SITE 4 AC8 14 HOH B 609 HOH B 613 CRYST1 101.030 149.580 57.920 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017265 0.00000