HEADER PROTEIN BINDING 05-DEC-15 5F67 TITLE AN EXQUISITELY SPECIFIC PDZ/TARGET RECOGNITION REVEALED BY THE TITLE 2 STRUCTURE OF INAD PDZ3 IN COMPLEX WITH TRP CHANNEL TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: INACTIVATION-NO-AFTER-POTENTIAL D PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ 3 DOMAIN, RESIDUES 345-448; COMPND 5 SYNONYM: INAD; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRP C TERMINAL TAIL; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: INAD, CG3504; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 12 ORGANISM_COMMON: FRUIT FLY; SOURCE 13 ORGANISM_TAXID: 7227 KEYWDS INAD, TRP, PDZ, ATYPICAL, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR F.YE,Y.SHANG,W.LIU,M.ZHANG REVDAT 3 08-NOV-23 5F67 1 JRNL REMARK REVDAT 2 16-MAR-16 5F67 1 JRNL REVDAT 1 24-FEB-16 5F67 0 JRNL AUTH F.YE,W.LIU,Y.SHANG,M.ZHANG JRNL TITL AN EXQUISITELY SPECIFIC PDZ/TARGET RECOGNITION REVEALED BY JRNL TITL 2 THE STRUCTURE OF INAD PDZ3 IN COMPLEX WITH TRP CHANNEL TAIL JRNL REF STRUCTURE V. 24 383 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26853938 JRNL DOI 10.1016/J.STR.2015.12.013 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7826 - 3.5187 0.95 2514 146 0.1569 0.1893 REMARK 3 2 3.5187 - 2.7931 0.99 2520 123 0.1529 0.1498 REMARK 3 3 2.7931 - 2.4401 1.00 2524 139 0.1605 0.2001 REMARK 3 4 2.4401 - 2.2170 1.00 2510 130 0.1472 0.1791 REMARK 3 5 2.2170 - 2.0581 1.00 2474 156 0.1441 0.1827 REMARK 3 6 2.0581 - 1.9368 1.00 2518 121 0.1475 0.2111 REMARK 3 7 1.9368 - 1.8398 1.00 2482 138 0.1624 0.2113 REMARK 3 8 1.8398 - 1.7597 0.97 2399 128 0.2058 0.2773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 38.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.47110 REMARK 3 B22 (A**2) : 12.55200 REMARK 3 B33 (A**2) : -6.08090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.07330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1747 REMARK 3 ANGLE : 1.116 2353 REMARK 3 CHIRALITY : 0.092 279 REMARK 3 PLANARITY : 0.005 299 REMARK 3 DIHEDRAL : 11.420 627 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 351:360) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0072 9.6829 35.2153 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1677 REMARK 3 T33: 0.1586 T12: 0.0295 REMARK 3 T13: -0.0072 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.0161 L22: 0.0180 REMARK 3 L33: 0.0080 L12: -0.0106 REMARK 3 L13: 0.0051 L23: 0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.1155 S13: 0.2653 REMARK 3 S21: 0.1497 S22: -0.0639 S23: -0.0999 REMARK 3 S31: -0.2159 S32: -0.2636 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 361:376) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8079 1.2970 22.9593 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1153 REMARK 3 T33: 0.1005 T12: -0.0157 REMARK 3 T13: 0.0178 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0847 L22: 0.0102 REMARK 3 L33: 0.1054 L12: -0.0255 REMARK 3 L13: 0.0467 L23: -0.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.0134 S13: -0.0316 REMARK 3 S21: 0.0182 S22: 0.0166 S23: -0.0365 REMARK 3 S31: 0.1147 S32: 0.1352 S33: 0.0050 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 377:396) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4728 -0.2585 20.8989 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1364 REMARK 3 T33: 0.1285 T12: -0.0233 REMARK 3 T13: 0.0125 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0456 L22: 0.0849 REMARK 3 L33: 0.0335 L12: 0.0135 REMARK 3 L13: 0.0346 L23: -0.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.1440 S13: -0.0798 REMARK 3 S21: 0.0758 S22: 0.0144 S23: 0.0569 REMARK 3 S31: 0.1262 S32: -0.2486 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 397:411) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4074 -6.1931 18.3749 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.0989 REMARK 3 T33: 0.1838 T12: 0.0426 REMARK 3 T13: 0.0105 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2978 L22: 0.0821 REMARK 3 L33: 0.1661 L12: 0.1538 REMARK 3 L13: 0.0365 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.0840 S13: -0.2635 REMARK 3 S21: -0.0238 S22: -0.0221 S23: -0.0144 REMARK 3 S31: 0.2463 S32: 0.0540 S33: 0.0641 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 412:416) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5593 4.9694 25.3932 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1178 REMARK 3 T33: 0.1299 T12: -0.0166 REMARK 3 T13: 0.0054 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.0466 L22: 0.0460 REMARK 3 L33: 0.0302 L12: 0.0116 REMARK 3 L13: -0.0242 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: -0.0374 S13: 0.0176 REMARK 3 S21: 0.0006 S22: -0.0759 S23: 0.0218 REMARK 3 S31: -0.0687 S32: -0.0965 S33: -0.0027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 417:425) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6944 11.3017 24.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1710 REMARK 3 T33: 0.1140 T12: -0.0029 REMARK 3 T13: -0.0067 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0072 L22: 0.0298 REMARK 3 L33: 0.0210 L12: -0.0136 REMARK 3 L13: 0.0035 L23: -0.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: -0.0487 S13: 0.0911 REMARK 3 S21: -0.0176 S22: -0.0554 S23: -0.0679 REMARK 3 S31: -0.1101 S32: -0.2285 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 426:435) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4445 10.2557 14.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.0799 REMARK 3 T33: 0.1851 T12: -0.0002 REMARK 3 T13: 0.0143 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.0248 L22: 0.0217 REMARK 3 L33: 0.2255 L12: 0.0118 REMARK 3 L13: 0.0192 L23: 0.0671 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.0551 S13: 0.1973 REMARK 3 S21: -0.1242 S22: -0.1174 S23: 0.0147 REMARK 3 S31: -0.1070 S32: -0.0927 S33: -0.0829 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 436:448) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9728 2.6420 24.2368 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.1382 REMARK 3 T33: 0.0945 T12: -0.0051 REMARK 3 T13: 0.0177 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.1281 L22: 0.0988 REMARK 3 L33: 0.0877 L12: -0.0828 REMARK 3 L13: 0.0284 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.0080 S13: 0.1612 REMARK 3 S21: -0.0193 S22: -0.0153 S23: 0.0575 REMARK 3 S31: 0.0342 S32: 0.0495 S33: 0.0545 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 1257:1261) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4611 -2.2949 3.2075 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.5270 REMARK 3 T33: 0.1863 T12: -0.0468 REMARK 3 T13: 0.0461 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.4479 L22: 0.2363 REMARK 3 L33: 0.0280 L12: -0.3072 REMARK 3 L13: 0.0924 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: 0.0894 S13: -0.0054 REMARK 3 S21: -0.1732 S22: 0.1270 S23: -0.0066 REMARK 3 S31: 0.0374 S32: -0.0709 S33: 0.0552 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 1262:1266) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7144 -10.2117 10.8595 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.1259 REMARK 3 T33: 0.1769 T12: 0.0038 REMARK 3 T13: 0.0213 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.0185 L22: 0.0006 REMARK 3 L33: 0.0177 L12: -0.0014 REMARK 3 L13: -0.0091 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: 0.0107 S13: -0.0111 REMARK 3 S21: -0.0306 S22: -0.0575 S23: -0.0318 REMARK 3 S31: 0.0339 S32: -0.0236 S33: -0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 1267:1275) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7057 -4.9477 7.6617 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1551 REMARK 3 T33: 0.0787 T12: -0.0179 REMARK 3 T13: -0.0100 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.0973 L22: 0.1470 REMARK 3 L33: 0.0091 L12: -0.4018 REMARK 3 L13: 0.0988 L23: -0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.1217 S13: 0.2149 REMARK 3 S21: -0.0538 S22: 0.0541 S23: -0.0146 REMARK 3 S31: 0.0791 S32: -0.0160 S33: -0.0283 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 351:360) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4235 -0.1453 -4.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.1820 REMARK 3 T33: 0.1558 T12: -0.0234 REMARK 3 T13: -0.0090 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0174 L22: 0.0118 REMARK 3 L33: 0.0149 L12: 0.0006 REMARK 3 L13: -0.0148 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: 0.1132 S13: -0.1593 REMARK 3 S21: -0.0743 S22: -0.0083 S23: -0.0557 REMARK 3 S31: 0.1733 S32: -0.2011 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 361:376) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7921 8.2587 7.7796 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1279 REMARK 3 T33: 0.0992 T12: 0.0140 REMARK 3 T13: -0.0074 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.1348 L22: 0.0287 REMARK 3 L33: 0.1045 L12: -0.0159 REMARK 3 L13: -0.0746 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.0072 S13: 0.0465 REMARK 3 S21: -0.0229 S22: 0.0729 S23: -0.0154 REMARK 3 S31: -0.1910 S32: 0.0668 S33: 0.0155 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 377:396) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1604 9.7932 9.7347 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1201 REMARK 3 T33: 0.1474 T12: 0.0203 REMARK 3 T13: -0.0094 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0884 L22: 0.0408 REMARK 3 L33: 0.1288 L12: -0.0306 REMARK 3 L13: -0.0160 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.1585 S13: 0.0857 REMARK 3 S21: -0.0348 S22: 0.0333 S23: 0.0835 REMARK 3 S31: -0.0704 S32: -0.2231 S33: 0.0113 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 397:411) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2619 15.7499 12.3583 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1015 REMARK 3 T33: 0.1873 T12: -0.0335 REMARK 3 T13: -0.0150 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.0883 L22: 0.0354 REMARK 3 L33: 0.0800 L12: -0.0079 REMARK 3 L13: -0.0254 L23: -0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0440 S13: 0.1957 REMARK 3 S21: -0.0041 S22: -0.0028 S23: -0.0410 REMARK 3 S31: -0.2374 S32: 0.1013 S33: 0.0019 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 412:425) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5893 0.3937 5.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1315 REMARK 3 T33: 0.1162 T12: 0.0057 REMARK 3 T13: -0.0010 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0691 L22: 0.0250 REMARK 3 L33: 0.1036 L12: 0.0284 REMARK 3 L13: -0.0333 L23: 0.0210 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.1384 S13: 0.0260 REMARK 3 S21: 0.0353 S22: -0.0046 S23: -0.0640 REMARK 3 S31: 0.0495 S32: -0.2422 S33: -0.0003 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 426:435) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2359 -0.6982 15.7487 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.0756 REMARK 3 T33: 0.1667 T12: -0.0049 REMARK 3 T13: -0.0015 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.0208 L22: 0.0252 REMARK 3 L33: 0.1560 L12: -0.0165 REMARK 3 L13: -0.0262 L23: 0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.0614 S13: -0.1795 REMARK 3 S21: 0.0256 S22: -0.0452 S23: 0.0111 REMARK 3 S31: 0.0483 S32: -0.0993 S33: -0.1095 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 436:447) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0117 6.1929 6.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1235 REMARK 3 T33: 0.1079 T12: 0.0033 REMARK 3 T13: -0.0139 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.0413 L22: 0.0537 REMARK 3 L33: -0.0002 L12: 0.0474 REMARK 3 L13: 0.0017 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: -0.0209 S13: -0.1562 REMARK 3 S21: 0.0024 S22: -0.0054 S23: 0.0291 REMARK 3 S31: -0.0163 S32: 0.1018 S33: 0.0013 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 1257:1261) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3179 11.8518 27.5085 REMARK 3 T TENSOR REMARK 3 T11: 0.2971 T22: 0.5459 REMARK 3 T33: 0.1806 T12: 0.0402 REMARK 3 T13: -0.0671 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 0.1265 L22: 0.0464 REMARK 3 L33: 0.0023 L12: -0.0214 REMARK 3 L13: -0.0052 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0761 S13: 0.0200 REMARK 3 S21: 0.0423 S22: 0.0229 S23: -0.0212 REMARK 3 S31: -0.0327 S32: -0.0124 S33: 0.0207 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 1262:1266) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0341 19.7800 19.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.1782 REMARK 3 T33: 0.1554 T12: 0.0212 REMARK 3 T13: -0.0362 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.0088 L22: 0.0004 REMARK 3 L33: 0.0192 L12: 0.0002 REMARK 3 L13: 0.0078 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: 0.0330 S13: 0.0281 REMARK 3 S21: -0.0501 S22: -0.0067 S23: 0.0044 REMARK 3 S31: 0.0212 S32: -0.0176 S33: -0.0003 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 1267:1275) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0618 14.5255 23.0529 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.1782 REMARK 3 T33: 0.0952 T12: 0.0418 REMARK 3 T13: 0.0382 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.4858 L22: 0.2545 REMARK 3 L33: 0.0260 L12: 0.3285 REMARK 3 L13: 0.1118 L23: 0.0766 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.0650 S13: -0.1652 REMARK 3 S21: 0.1623 S22: 0.1634 S23: -0.0758 REMARK 3 S31: 0.0469 S32: -0.0548 S33: 0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 351:447 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 351:447 ) REMARK 3 ATOM PAIRS NUMBER : 731 REMARK 3 RMSD : 0.041 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESSEQ 1257:1275 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 1257:1275 ) REMARK 3 ATOM PAIRS NUMBER : 130 REMARK 3 RMSD : 0.015 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3DIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2%(V/V) POLYETHYLENE GLYCOL 400, 0.1 M REMARK 280 IMIDAZOLE PH 7.0, 24%(W/V) POLYETHYLENE GLYCOL MONOMETHYL ETHER REMARK 280 5000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 341 REMARK 465 PRO A 342 REMARK 465 GLY A 343 REMARK 465 SER A 344 REMARK 465 LYS A 345 REMARK 465 LYS A 346 REMARK 465 PHE A 347 REMARK 465 PRO A 348 REMARK 465 THR A 349 REMARK 465 ALA A 350 REMARK 465 GLY B 341 REMARK 465 PRO B 342 REMARK 465 GLY B 343 REMARK 465 SER B 344 REMARK 465 LYS B 345 REMARK 465 LYS B 346 REMARK 465 PHE B 347 REMARK 465 PRO B 348 REMARK 465 THR B 349 REMARK 465 ALA B 350 REMARK 465 LYS B 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 363 CE NZ REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 ARG C1269 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 353 CG CD OE1 OE2 REMARK 470 LYS B 363 CE NZ REMARK 470 GLU B 386 CG CD OE1 OE2 REMARK 470 ARG D1269 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 1272 O HOH D 1301 1.81 REMARK 500 O HOH B 566 O HOH B 579 1.84 REMARK 500 O HOH B 540 O HOH B 598 1.97 REMARK 500 O HOH B 580 O HOH B 582 1.99 REMARK 500 O HOH D 1313 O HOH D 1315 2.00 REMARK 500 O HOH B 528 O HOH B 542 2.02 REMARK 500 O HOH B 570 O HOH B 609 2.08 REMARK 500 O HOH A 606 O HOH A 613 2.13 REMARK 500 OE2 GLU B 398 O HOH B 501 2.14 REMARK 500 O HOH D 1307 O HOH D 1314 2.16 REMARK 500 O HOH B 622 O HOH B 624 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 1313 O HOH B 619 2555 1.99 REMARK 500 O HOH B 542 O HOH B 557 2555 2.05 REMARK 500 O HOH A 536 O HOH A 539 2656 2.09 REMARK 500 O HOH A 568 O HOH C 1307 1565 2.12 REMARK 500 O HOH B 582 O HOH D 1310 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 417 -127.99 50.33 REMARK 500 SER C1272 -169.43 -110.21 REMARK 500 ASN B 417 -126.82 49.86 REMARK 500 SER D1272 -169.19 -109.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C1314 DISTANCE = 5.86 ANGSTROMS DBREF 5F67 A 345 448 UNP Q24008 INAD_DROME 345 448 DBREF 5F67 C 1257 1275 PDB 5F67 5F67 1257 1275 DBREF 5F67 B 345 448 UNP Q24008 INAD_DROME 345 448 DBREF 5F67 D 1257 1275 PDB 5F67 5F67 1257 1275 SEQADV 5F67 GLY A 341 UNP Q24008 EXPRESSION TAG SEQADV 5F67 PRO A 342 UNP Q24008 EXPRESSION TAG SEQADV 5F67 GLY A 343 UNP Q24008 EXPRESSION TAG SEQADV 5F67 SER A 344 UNP Q24008 EXPRESSION TAG SEQADV 5F67 GLY B 341 UNP Q24008 EXPRESSION TAG SEQADV 5F67 PRO B 342 UNP Q24008 EXPRESSION TAG SEQADV 5F67 GLY B 343 UNP Q24008 EXPRESSION TAG SEQADV 5F67 SER B 344 UNP Q24008 EXPRESSION TAG SEQRES 1 A 108 GLY PRO GLY SER LYS LYS PHE PRO THR ALA SER ASP GLU SEQRES 2 A 108 THR LYS PHE ILE PHE ASP GLN PHE PRO LYS ALA ARG THR SEQRES 3 A 108 VAL GLN VAL ARG LYS GLU GLY PHE LEU GLY ILE MET VAL SEQRES 4 A 108 ILE TYR GLY LYS HIS ALA GLU VAL GLY SER GLY ILE PHE SEQRES 5 A 108 ILE SER ASP LEU ARG GLU GLY SER ASN ALA GLU LEU ALA SEQRES 6 A 108 GLY VAL LYS VAL GLY ASP MET LEU LEU ALA VAL ASN GLN SEQRES 7 A 108 ASP VAL THR LEU GLU SER ASN TYR ASP ASP ALA THR GLY SEQRES 8 A 108 LEU LEU LYS ARG ALA GLU GLY VAL VAL THR MET ILE LEU SEQRES 9 A 108 LEU THR LEU LYS SEQRES 1 C 19 GLY PRO GLY SER ARG GLY LYS SER THR VAL THR GLY ARG SEQRES 2 C 19 MET ILE SER GLY TRP LEU SEQRES 1 B 108 GLY PRO GLY SER LYS LYS PHE PRO THR ALA SER ASP GLU SEQRES 2 B 108 THR LYS PHE ILE PHE ASP GLN PHE PRO LYS ALA ARG THR SEQRES 3 B 108 VAL GLN VAL ARG LYS GLU GLY PHE LEU GLY ILE MET VAL SEQRES 4 B 108 ILE TYR GLY LYS HIS ALA GLU VAL GLY SER GLY ILE PHE SEQRES 5 B 108 ILE SER ASP LEU ARG GLU GLY SER ASN ALA GLU LEU ALA SEQRES 6 B 108 GLY VAL LYS VAL GLY ASP MET LEU LEU ALA VAL ASN GLN SEQRES 7 B 108 ASP VAL THR LEU GLU SER ASN TYR ASP ASP ALA THR GLY SEQRES 8 B 108 LEU LEU LYS ARG ALA GLU GLY VAL VAL THR MET ILE LEU SEQRES 9 B 108 LEU THR LEU LYS SEQRES 1 D 19 GLY PRO GLY SER ARG GLY LYS SER THR VAL THR GLY ARG SEQRES 2 D 19 MET ILE SER GLY TRP LEU FORMUL 5 HOH *266(H2 O) HELIX 1 AA1 PHE A 356 PHE A 361 1 6 HELIX 2 AA2 SER A 400 ALA A 405 1 6 HELIX 3 AA3 ASN A 425 ALA A 436 1 12 HELIX 4 AA4 PHE B 356 PHE B 361 1 6 HELIX 5 AA5 SER B 400 ALA B 405 1 6 HELIX 6 AA6 ASN B 425 ALA B 436 1 12 SHEET 1 AA1 4 ARG A 365 ARG A 370 0 SHEET 2 AA1 4 VAL A 439 LEU A 445 -1 O VAL A 440 N VAL A 369 SHEET 3 AA1 4 MET A 412 VAL A 416 -1 N LEU A 414 O ILE A 443 SHEET 4 AA1 4 ASP A 419 VAL A 420 -1 O ASP A 419 N VAL A 416 SHEET 1 AA2 2 ILE A 377 HIS A 384 0 SHEET 2 AA2 2 GLY A 388 LEU A 396 -1 O GLY A 390 N GLY A 382 SHEET 1 AA3 2 GLY C1262 LYS C1263 0 SHEET 2 AA3 2 MET C1270 ILE C1271 -1 O ILE C1271 N GLY C1262 SHEET 1 AA4 4 ARG B 365 ARG B 370 0 SHEET 2 AA4 4 VAL B 439 LEU B 445 -1 O VAL B 440 N VAL B 369 SHEET 3 AA4 4 MET B 412 VAL B 416 -1 N LEU B 414 O ILE B 443 SHEET 4 AA4 4 ASP B 419 VAL B 420 -1 O ASP B 419 N VAL B 416 SHEET 1 AA5 2 ILE B 377 HIS B 384 0 SHEET 2 AA5 2 GLY B 388 LEU B 396 -1 O GLY B 390 N GLY B 382 SHEET 1 AA6 2 GLY D1262 LYS D1263 0 SHEET 2 AA6 2 MET D1270 ILE D1271 -1 O ILE D1271 N GLY D1262 CRYST1 57.420 30.126 61.454 90.00 90.50 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017416 0.000000 0.000154 0.00000 SCALE2 0.000000 0.033194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016273 0.00000