HEADER TRANSFERASE/RNA 09-DEC-15 5F8I TITLE ENTEROVIRUS 71 POLYMERASE ELONGATION COMPLEX (C1S2/3 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1732-2193; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (35-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)- COMPND 13 3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS A71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BL21(DE3) PCG1; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE-RNA COMPLEX, ELONGATION, NUCLEOTIDE ADDITION CYCLE, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.SHU,P.GONG REVDAT 3 08-NOV-23 5F8I 1 JRNL REMARK LINK REVDAT 2 03-AUG-16 5F8I 1 JRNL REVDAT 1 22-JUN-16 5F8I 0 JRNL AUTH B.SHU,P.GONG JRNL TITL STRUCTURAL BASIS OF VIRAL RNA-DEPENDENT RNA POLYMERASE JRNL TITL 2 CATALYSIS AND TRANSLOCATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E4005 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27339134 JRNL DOI 10.1073/PNAS.1602591113 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE: 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2677 - 5.2001 0.99 2902 161 0.1921 0.2158 REMARK 3 2 5.2001 - 4.1302 1.00 2793 149 0.1739 0.2277 REMARK 3 3 4.1302 - 3.6089 0.99 2757 147 0.1776 0.2055 REMARK 3 4 3.6089 - 3.2793 1.00 2747 141 0.1998 0.2409 REMARK 3 5 3.2793 - 3.0445 1.00 2713 146 0.2170 0.2928 REMARK 3 6 3.0445 - 2.8651 1.00 2714 144 0.2338 0.3067 REMARK 3 7 2.8651 - 2.7217 1.00 2726 154 0.2481 0.3121 REMARK 3 8 2.7217 - 2.6032 1.00 2734 135 0.2566 0.3089 REMARK 3 9 2.6032 - 2.5031 0.98 2631 151 0.2656 0.3537 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4339 REMARK 3 ANGLE : 1.198 5996 REMARK 3 CHIRALITY : 0.047 671 REMARK 3 PLANARITY : 0.006 684 REMARK 3 DIHEDRAL : 16.083 1658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M MES PH 6.5, 25.5 % (W/V) PEG REMARK 280 5000 MONOMETHYL ETHER, 15 %(V/V) GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.83450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.82800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.82800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.83450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 G B 581 REMARK 465 G B 582 REMARK 465 G B 583 REMARK 465 A B 584 REMARK 465 G B 585 REMARK 465 A B 586 REMARK 465 U B 587 REMARK 465 G B 588 REMARK 465 A B 589 REMARK 465 A B 590 REMARK 465 A B 591 REMARK 465 G B 592 REMARK 465 U B 593 REMARK 465 C B 594 REMARK 465 U B 595 REMARK 465 C B 596 REMARK 465 C B 597 REMARK 465 A B 598 REMARK 465 C B 611 REMARK 465 G B 612 REMARK 465 A B 613 REMARK 465 A B 614 REMARK 465 A B 615 REMARK 465 U C 686 REMARK 465 G C 687 REMARK 465 U C 688 REMARK 465 U C 689 REMARK 465 C C 690 REMARK 465 G C 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 360 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 356 O HOH A 1101 2.12 REMARK 500 OE1 GLU A 177 O HOH A 1102 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 343 ZN ZN A 1002 4445 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 212 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 -93.16 -99.01 REMARK 500 ASP A 71 -163.07 -76.56 REMARK 500 SER A 115 161.24 -49.75 REMARK 500 LEU A 225 75.29 -116.48 REMARK 500 ARG A 277 -112.91 65.15 REMARK 500 ASP A 407 106.02 -167.03 REMARK 500 SER A 439 6.14 -65.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 234 O REMARK 620 2 ASP A 329 OD2 115.1 REMARK 620 3 CTP A1001 O1A 151.2 73.5 REMARK 620 4 CTP A1001 O2B 109.6 123.8 83.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 271 NE2 REMARK 620 2 HIS A 273 NE2 133.4 REMARK 620 3 CYS A 282 SG 105.2 97.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 330 OD1 REMARK 620 2 HOH A1145 O 90.2 REMARK 620 3 HOH A1209 O 121.1 110.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F8G RELATED DB: PDB REMARK 900 RELATED ID: 5F8H RELATED DB: PDB REMARK 900 RELATED ID: 5F8J RELATED DB: PDB REMARK 900 RELATED ID: 5F8L RELATED DB: PDB REMARK 900 RELATED ID: 5F8M RELATED DB: PDB REMARK 900 RELATED ID: 5F8N RELATED DB: PDB REMARK 900 RELATED ID: 5F8O RELATED DB: PDB DBREF 5F8I A 1 462 UNP E5RPG2 E5RPG2_9ENTO 1732 2193 DBREF 5F8I B 581 615 PDB 5F8I 5F8I 581 615 DBREF 5F8I C 686 701 PDB 5F8I 5F8I 686 701 SEQADV 5F8I HIS A 463 UNP E5RPG2 EXPRESSION TAG SEQADV 5F8I HIS A 464 UNP E5RPG2 EXPRESSION TAG SEQADV 5F8I HIS A 465 UNP E5RPG2 EXPRESSION TAG SEQADV 5F8I HIS A 466 UNP E5RPG2 EXPRESSION TAG SEQADV 5F8I HIS A 467 UNP E5RPG2 EXPRESSION TAG SEQADV 5F8I HIS A 468 UNP E5RPG2 EXPRESSION TAG SEQRES 1 A 468 GLY GLU ILE GLN TRP VAL LYS PRO ASN LYS GLU THR GLY SEQRES 2 A 468 ARG LEU ASN ILE ASN GLY PRO THR ARG THR LYS LEU GLU SEQRES 3 A 468 PRO SER VAL PHE HIS ASP VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 468 PRO ALA VAL LEU HIS SER LYS ASP PRO ARG LEU GLU VAL SEQRES 5 A 468 ASP PHE GLU GLN ALA LEU PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 468 THR LEU TYR GLU PRO ASP GLU TYR ILE LYS GLU ALA ALA SEQRES 7 A 468 LEU HIS TYR ALA ASN GLN LEU LYS GLN LEU ASP ILE ASP SEQRES 8 A 468 THR SER GLN MET SER MET GLU GLU ALA CYS TYR GLY THR SEQRES 9 A 468 GLU ASN LEU GLU ALA ILE ASP LEU HIS THR SER ALA GLY SEQRES 10 A 468 TYR PRO TYR SER ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 468 LEU ASP SER THR THR ARG ASP VAL SER LYS MET LYS PHE SEQRES 12 A 468 TYR MET ASP LYS TYR GLY LEU ASP LEU PRO TYR SER THR SEQRES 13 A 468 TYR VAL LYS ASP GLU LEU ARG SER ILE ASP LYS ILE LYS SEQRES 14 A 468 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 468 ASP SER VAL TYR LEU ARG MET THR PHE GLY HIS LEU TYR SEQRES 16 A 468 GLU THR PHE HIS ALA ASN PRO GLY THR VAL THR GLY SER SEQRES 17 A 468 ALA VAL GLY CYS ASN PRO ASP THR PHE TRP SER LYS LEU SEQRES 18 A 468 PRO ILE LEU LEU PRO GLY SER LEU PHE ALA PHE ASP TYR SEQRES 19 A 468 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ARG SEQRES 20 A 468 ALA LEU GLU LEU VAL LEU ARG GLU ILE GLY TYR SER GLU SEQRES 21 A 468 GLU ALA VAL SER LEU VAL GLU GLY ILE ASN HIS THR HIS SEQRES 22 A 468 HIS VAL TYR ARG ASN LYS THR TYR CYS VAL LEU GLY GLY SEQRES 23 A 468 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 468 MET ILE ASN ASN ILE ILE ILE ARG ALA LEU LEU ILE LYS SEQRES 25 A 468 THR PHE LYS GLY ILE ASP LEU ASP GLU LEU ASN MET VAL SEQRES 26 A 468 ALA TYR GLY ASP ASP VAL LEU ALA SER TYR PRO PHE PRO SEQRES 27 A 468 ILE ASP CYS LEU GLU LEU ALA ARG THR GLY LYS GLU TYR SEQRES 28 A 468 GLY LEU THR MET THR PRO ALA ASP LYS SER PRO CYS PHE SEQRES 29 A 468 ASN GLU VAL ASN TRP ASP ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 468 GLY PHE LEU PRO ASP GLU GLN PHE PRO PHE LEU ILE HIS SEQRES 31 A 468 PRO THR MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG SEQRES 32 A 468 TRP THR LYS ASP ALA ARG ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 468 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY LYS GLN GLU SEQRES 34 A 468 TYR GLU LYS PHE VAL SER ALA ILE ARG SER VAL PRO VAL SEQRES 35 A 468 GLY LYS ALA LEU ALA ILE PRO ASN TYR GLU ASN LEU ARG SEQRES 36 A 468 ARG ASN TRP LEU GLU LEU PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 35 G G G A G A U G A A A G U SEQRES 2 B 35 C U C C A G G U C U C U C SEQRES 3 B 35 U C G U C G A A A SEQRES 1 C 16 U G U U C G A C G A G A G SEQRES 2 C 16 A G A HET CTP A1001 29 HET ZN A1002 1 HET SO4 A1003 5 HET MG A1004 1 HET MG A1005 1 HET GOL B 701 6 HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CTP C9 H16 N3 O14 P3 FORMUL 5 ZN ZN 2+ FORMUL 6 SO4 O4 S 2- FORMUL 7 MG 2(MG 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *144(H2 O) HELIX 1 AA1 ASN A 9 GLY A 13 1 5 HELIX 2 AA2 ASP A 53 SER A 60 1 8 HELIX 3 AA3 ASP A 71 GLN A 87 1 17 HELIX 4 AA4 SER A 96 GLY A 103 1 8 HELIX 5 AA5 PRO A 119 LEU A 123 5 5 HELIX 6 AA6 LYS A 126 ILE A 130 5 5 HELIX 7 AA7 VAL A 138 GLY A 149 1 12 HELIX 8 AA8 ILE A 165 LYS A 170 1 6 HELIX 9 AA9 SER A 180 ASN A 201 1 22 HELIX 10 AB1 ASN A 213 TRP A 218 1 6 HELIX 11 AB2 LYS A 220 LEU A 225 1 6 HELIX 12 AB3 GLY A 236 LEU A 241 1 6 HELIX 13 AB4 SER A 242 ILE A 256 1 15 HELIX 14 AB5 SER A 259 LEU A 265 1 7 HELIX 15 AB6 VAL A 266 ASN A 270 1 5 HELIX 16 AB7 GLY A 293 PHE A 314 1 22 HELIX 17 AB8 ASP A 318 LEU A 322 5 5 HELIX 18 AB9 ASP A 340 TYR A 351 1 12 HELIX 19 AC1 PRO A 394 ARG A 403 1 10 HELIX 20 AC2 ASP A 407 ARG A 409 5 3 HELIX 21 AC3 ASN A 410 TRP A 423 1 14 HELIX 22 AC4 GLY A 426 SER A 439 1 14 HELIX 23 AC5 PRO A 441 LEU A 446 5 6 HELIX 24 AC6 ASN A 450 LEU A 461 1 12 SHEET 1 AA1 5 GLU A 2 PRO A 8 0 SHEET 2 AA1 5 LYS A 279 LEU A 284 -1 O THR A 280 N LYS A 7 SHEET 3 AA1 5 HIS A 271 TYR A 276 -1 N THR A 272 O VAL A 283 SHEET 4 AA1 5 TYR A 154 VAL A 158 1 N TYR A 154 O VAL A 275 SHEET 5 AA1 5 LEU A 175 ALA A 178 -1 O ALA A 178 N SER A 155 SHEET 1 AA2 2 GLU A 26 PRO A 27 0 SHEET 2 AA2 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 AA3 2 LYS A 38 PRO A 40 0 SHEET 2 AA3 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 AA4 3 SER A 228 PHE A 230 0 SHEET 2 AA4 3 ASP A 330 TYR A 335 -1 O TYR A 335 N SER A 228 SHEET 3 AA4 3 ASN A 323 TYR A 327 -1 N ASN A 323 O SER A 334 SHEET 1 AA5 2 PHE A 232 TYR A 234 0 SHEET 2 AA5 2 MET A 355 PRO A 357 -1 O THR A 356 N ASP A 233 SHEET 1 AA6 2 GLY A 378 PRO A 381 0 SHEET 2 AA6 2 ILE A 389 THR A 392 -1 O HIS A 390 N LEU A 380 LINK O TYR A 234 MG MG A1004 1555 1555 2.16 LINK NE2 HIS A 271 ZN ZN A1002 1555 1555 1.75 LINK NE2 HIS A 273 ZN ZN A1002 1555 1555 2.12 LINK SG CYS A 282 ZN ZN A1002 1555 1555 2.00 LINK OD2 ASP A 329 MG MG A1004 1555 1555 2.08 LINK OD1 ASP A 330 MG MG A1005 1555 1555 2.20 LINK O1A CTP A1001 MG MG A1004 1555 1555 2.36 LINK O2B CTP A1001 MG MG A1004 1555 1555 1.89 LINK MG MG A1005 O HOH A1145 1555 1555 1.94 LINK MG MG A1005 O HOH A1209 1555 1555 1.82 CISPEP 1 TYR A 118 PRO A 119 0 -4.50 SITE 1 AC1 19 LYS A 159 ARG A 163 ARG A 174 TYR A 234 SITE 2 AC1 19 GLY A 236 TYR A 237 ASP A 238 SER A 289 SITE 3 AC1 19 THR A 294 ASN A 298 ASP A 329 MG A1004 SITE 4 AC1 19 HOH A1123 HOH A1124 HOH A1131 HOH A1148 SITE 5 AC1 19 HOH A1150 G B 600 A C 701 SITE 1 AC2 4 HIS A 271 HIS A 273 CYS A 282 GLU A 343 SITE 1 AC3 5 CYS A 212 ASN A 213 THR A 216 PHE A 217 SITE 2 AC3 5 LYS A 220 SITE 1 AC4 4 TYR A 234 ASP A 329 CTP A1001 HOH A1197 SITE 1 AC5 4 ASP A 330 THR A 373 HOH A1145 HOH A1209 SITE 1 AC6 6 CYS A 212 TYR A 327 ARG A 377 U B 603 SITE 2 AC6 6 C B 604 G C 700 CRYST1 63.669 77.310 149.656 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006682 0.00000