HEADER TRANSFERASE 10-DEC-15 5FA0 TITLE THE STRUCTURE OF THE BETA-3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID TITLE 2 TRANSFERASE DOMAIN FROM WBBB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE N-ACETYL GLUCOSAMINYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAOULTELLA TERRIGENA; SOURCE 3 ORGANISM_TAXID: 577; SOURCE 4 GENE: WBBB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS LPS BIOSYNTHESIS, GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MALLETTE,O.G.OVCHINNIKOVA,C.WHITFIELD,M.S.KIMBER REVDAT 2 25-APR-18 5FA0 1 JRNL REMARK REVDAT 1 18-MAY-16 5FA0 0 JRNL AUTH O.G.OVCHINNIKOVA,E.MALLETTE,A.KOIZUMI,T.L.LOWARY,M.S.KIMBER, JRNL AUTH 2 C.WHITFIELD JRNL TITL BACTERIAL BETA-KDO GLYCOSYLTRANSFERASES REPRESENT A NEW JRNL TITL 2 GLYCOSYLTRANSFERASE FAMILY (GT99). JRNL REF PROC. NATL. ACAD. SCI. V. 113 E3120 2016 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27199480 JRNL DOI 10.1073/PNAS.1603146113 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4717 - 4.5982 1.00 4788 153 0.1657 0.1841 REMARK 3 2 4.5982 - 3.6504 1.00 4612 142 0.1498 0.2157 REMARK 3 3 3.6504 - 3.1892 1.00 4564 140 0.1844 0.2201 REMARK 3 4 3.1892 - 2.8977 1.00 4558 143 0.2019 0.3043 REMARK 3 5 2.8977 - 2.6900 1.00 4507 140 0.2063 0.1973 REMARK 3 6 2.6900 - 2.5314 1.00 4522 141 0.2116 0.2764 REMARK 3 7 2.5314 - 2.4047 1.00 4481 141 0.2153 0.2568 REMARK 3 8 2.4047 - 2.3000 1.00 4497 141 0.2242 0.2546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6397 REMARK 3 ANGLE : 0.636 8697 REMARK 3 CHIRALITY : 0.026 965 REMARK 3 PLANARITY : 0.002 1128 REMARK 3 DIHEDRAL : 12.116 2291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1413 -40.4911 38.8671 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: -0.0187 REMARK 3 T33: 0.1639 T12: 0.0297 REMARK 3 T13: 0.0345 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 3.7399 L22: 1.3269 REMARK 3 L33: 2.3438 L12: 0.2429 REMARK 3 L13: 0.0718 L23: 0.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.1093 S13: 0.1930 REMARK 3 S21: -0.0272 S22: -0.0266 S23: -0.1129 REMARK 3 S31: -0.0536 S32: -0.0113 S33: 0.0097 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 222:320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8032 -30.2250 50.1315 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.6122 REMARK 3 T33: 0.3217 T12: 0.2981 REMARK 3 T13: -0.0489 T23: -0.2139 REMARK 3 L TENSOR REMARK 3 L11: 1.2518 L22: 0.9870 REMARK 3 L33: 1.4674 L12: 0.3458 REMARK 3 L13: 0.6432 L23: -0.4296 REMARK 3 S TENSOR REMARK 3 S11: -0.5018 S12: -0.7122 S13: 0.5949 REMARK 3 S21: -0.0518 S22: 0.1680 S23: 0.3775 REMARK 3 S31: -0.7119 S32: -0.7238 S33: 0.0736 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 157:212 OR RESID 321:407 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3950 -39.0046 65.3367 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.4695 REMARK 3 T33: 0.0174 T12: 0.0822 REMARK 3 T13: -0.0290 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 2.9136 L22: 2.0283 REMARK 3 L33: 3.9608 L12: -0.6213 REMARK 3 L13: 0.0918 L23: 0.5762 REMARK 3 S TENSOR REMARK 3 S11: -0.2417 S12: -0.8215 S13: 0.0593 REMARK 3 S21: 0.3991 S22: 0.1336 S23: -0.1735 REMARK 3 S31: -0.0957 S32: -0.3260 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1450 -40.0878 34.1901 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.0384 REMARK 3 T33: 0.1467 T12: -0.0162 REMARK 3 T13: 0.0008 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.8102 L22: 1.7166 REMARK 3 L33: 1.6756 L12: -0.1801 REMARK 3 L13: -0.5155 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.1176 S13: -0.2320 REMARK 3 S21: 0.0854 S22: -0.0006 S23: 0.0689 REMARK 3 S31: 0.2495 S32: 0.1070 S33: -0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 222:320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2384 -28.4106 23.6014 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.4014 REMARK 3 T33: 0.2240 T12: 0.0062 REMARK 3 T13: -0.0040 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.9454 L22: 2.6950 REMARK 3 L33: 3.6138 L12: -0.9298 REMARK 3 L13: 1.0336 L23: 0.1921 REMARK 3 S TENSOR REMARK 3 S11: -0.1848 S12: 0.4289 S13: 0.5567 REMARK 3 S21: -0.0991 S22: -0.0090 S23: -0.4677 REMARK 3 S31: -0.4830 S32: 0.2909 S33: 0.1456 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 157:216 OR RESID 321:402 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8208 -35.7038 9.0245 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.9315 REMARK 3 T33: -0.0441 T12: -0.0488 REMARK 3 T13: 0.0075 T23: -0.0983 REMARK 3 L TENSOR REMARK 3 L11: 2.2164 L22: 2.0656 REMARK 3 L33: 3.1565 L12: -0.0568 REMARK 3 L13: -0.0642 L23: 0.4644 REMARK 3 S TENSOR REMARK 3 S11: -0.1031 S12: 1.6453 S13: 0.0961 REMARK 3 S21: -0.6200 S22: 0.2589 S23: -0.0875 REMARK 3 S31: -0.0134 S32: -0.1254 S33: 0.0336 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97836 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML WBBB, 0.2M MGCL2, 0.1 M REMARK 280 TRIS.HCL, 25 % PEG 4000, 10 MM TRIS(2-CARBOXYETHYL)PHOSPHINE, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.46500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.35500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.35500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.46500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 PRO A 213 REMARK 465 PRO A 214 REMARK 465 ALA A 215 REMARK 465 GLU A 216 REMARK 465 ALA A 217 REMARK 465 ALA A 218 REMARK 465 THR A 219 REMARK 465 HIS A 220 REMARK 465 SER A 221 REMARK 465 GLY A 383 REMARK 465 SER A 384 REMARK 465 LEU A 385 REMARK 465 SER A 386 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 MSE B 0 REMARK 465 ALA B 217 REMARK 465 ALA B 218 REMARK 465 THR B 219 REMARK 465 HIS B 220 REMARK 465 SER B 221 REMARK 465 ASP B 380 REMARK 465 MSE B 381 REMARK 465 PRO B 382 REMARK 465 GLY B 383 REMARK 465 SER B 384 REMARK 465 LEU B 385 REMARK 465 SER B 386 REMARK 465 GLN B 387 REMARK 465 ALA B 388 REMARK 465 GLU B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 722 O HOH B 683 1.80 REMARK 500 O HOH B 713 O HOH B 740 1.84 REMARK 500 O HOH A 873 O HOH A 903 1.92 REMARK 500 OD1 ASP A 57 O HOH A 601 1.93 REMARK 500 O HOH A 869 O HOH A 877 1.96 REMARK 500 OD2 ASP B 97 O HOH B 501 1.98 REMARK 500 O HOH A 610 O HOH A 839 1.98 REMARK 500 O HOH A 691 O HOH A 756 1.99 REMARK 500 O HOH B 680 O HOH B 697 2.00 REMARK 500 OH TYR A 255 OE2 GLU A 294 2.01 REMARK 500 O HOH B 668 O HOH B 714 2.03 REMARK 500 O HOH B 604 O HOH B 717 2.05 REMARK 500 O HOH B 725 O HOH B 747 2.07 REMARK 500 O HOH B 687 O HOH B 706 2.09 REMARK 500 OG SER A 378 O HOH A 602 2.09 REMARK 500 O HOH B 684 O HOH B 737 2.10 REMARK 500 OE1 GLU B 368 O HOH B 502 2.10 REMARK 500 O HOH B 590 O HOH B 695 2.11 REMARK 500 O HOH A 824 O HOH A 876 2.11 REMARK 500 O HOH A 672 O HOH A 689 2.11 REMARK 500 O HOH A 694 O HOH A 826 2.12 REMARK 500 OH TYR B 255 OE2 GLU B 294 2.12 REMARK 500 OE2 GLU B 67 O HOH B 503 2.13 REMARK 500 NE ARG B 263 O HOH B 504 2.14 REMARK 500 O THR B 182 O HOH B 505 2.14 REMARK 500 O HOH A 838 O HOH A 864 2.16 REMARK 500 ND1 HIS A 96 O HOH A 603 2.17 REMARK 500 O HOH A 763 O HOH A 886 2.17 REMARK 500 OG SER A 63 O HOH A 604 2.18 REMARK 500 OE1 GLU A 210 O HOH A 605 2.18 REMARK 500 NH1 ARG B 51 O HOH B 506 2.19 REMARK 500 N GLU B 256 O HOH B 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 855 O HOH B 749 1655 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 37 -159.33 -149.62 REMARK 500 CYS A 140 90.81 -164.00 REMARK 500 ASN A 179 -63.66 69.38 REMARK 500 ASP A 196 77.50 -118.64 REMARK 500 LYS A 198 58.78 -97.63 REMARK 500 VAL A 211 -55.77 -152.84 REMARK 500 ASP A 274 -78.85 -55.46 REMARK 500 ASN A 299 35.89 -157.76 REMARK 500 HIS A 363 75.02 47.95 REMARK 500 ASP A 380 -108.92 -109.45 REMARK 500 MSE A 381 156.44 146.68 REMARK 500 ALA B 16 58.96 39.84 REMARK 500 THR B 37 -157.54 -152.05 REMARK 500 CYS B 140 84.84 -164.52 REMARK 500 ASN B 179 -68.73 63.69 REMARK 500 ASP B 275 68.05 -107.51 REMARK 500 VAL B 276 -50.00 -121.84 REMARK 500 ASN B 299 35.68 -154.48 REMARK 500 HIS B 363 71.19 51.83 REMARK 500 HIS B 390 -56.26 -128.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 906 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FA1 RELATED DB: PDB DBREF 5FA0 A 2 401 UNP Q6U8B0 Q6U8B0_RAOTE 2 401 DBREF 5FA0 B 2 401 UNP Q6U8B0 Q6U8B0_RAOTE 2 401 SEQADV 5FA0 MSE A 0 UNP Q6U8B0 INITIATING METHIONINE SEQADV 5FA0 GLY A 1 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 LEU A 402 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 GLU A 403 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS A 404 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS A 405 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS A 406 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS A 407 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS A 408 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS A 409 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 MSE B 0 UNP Q6U8B0 INITIATING METHIONINE SEQADV 5FA0 GLY B 1 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 LEU B 402 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 GLU B 403 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS B 404 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS B 405 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS B 406 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS B 407 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS B 408 UNP Q6U8B0 EXPRESSION TAG SEQADV 5FA0 HIS B 409 UNP Q6U8B0 EXPRESSION TAG SEQRES 1 A 410 MSE GLY LEU ALA VAL PHE LEU PRO PRO TYR PRO PHE ARG SEQRES 2 A 410 GLY LEU LYS ALA PRO TYR LEU TRP MSE PHE TYR LYS TYR SEQRES 3 A 410 LEU HIS CYS ALA THR ASP SER ILE LEU PHE ILE THR GLY SEQRES 4 A 410 GLU ASP TYR LEU SER VAL THR ASP ASP GLU ALA GLN ARG SEQRES 5 A 410 ALA ARG TRP GLU PHE ASP PRO ALA SER MSE ALA SER LEU SEQRES 6 A 410 GLY TYR GLU LEU PRO ASN ALA GLN SER MSE ALA CYS HIS SEQRES 7 A 410 GLU TYR LEU THR LEU ASP ASN ALA PHE TYR GLU THR LEU SEQRES 8 A 410 LEU SER ARG HIS HIS HIS ASP PRO ILE LYS SER PHE SER SEQRES 9 A 410 ALA PHE LEU THR GLU ARG ILE PRO ASP LEU GLU THR GLU SEQRES 10 A 410 LEU HIS ALA LEU LEU ASP SER LYS LYS GLY ILE ILE ASP SEQRES 11 A 410 GLN ILE ASP THR PHE ILE SER ILE CYS ASN CYS PRO SER SEQRES 12 A 410 LEU GLU HIS VAL ALA ARG THR LEU GLY LYS GLU VAL MSE SEQRES 13 A 410 HIS ILE GLU ILE GLY PRO LEU ARG ALA PRO MSE TYR ARG SEQRES 14 A 410 ASN THR ALA TYR LEU ASP PHE ALA GLY VAL ASN GLY GLY SEQRES 15 A 410 THR GLU ALA SER ALA ARG TYR GLU LYS CYS GLN ALA GLU SEQRES 16 A 410 PHE ASP ILE LYS ALA SER LEU GLY ASP LEU HIS ASN TYR SEQRES 17 A 410 PHE LEU GLU VAL LEU PRO PRO ALA GLU ALA ALA THR HIS SEQRES 18 A 410 SER ALA ALA GLY VAL VAL LEU GLN VAL GLU ASP ASP SER SEQRES 19 A 410 ASN LEU ILE ALA TYR ASN HIS ASP PHE THR ASN ILE SER SEQRES 20 A 410 LEU LEU SER TYR VAL ARG GLN ARG TYR GLU LYS GLU ASP SEQRES 21 A 410 ILE LEU VAL ARG ALA HIS PRO GLY SER LEU PHE ARG LEU SEQRES 22 A 410 ARG ASP ASP VAL PHE THR ILE ASP ASP SER ALA ASN SER SEQRES 23 A 410 LEU ALA PHE ILE ASN GLN CYS ASN GLU VAL PHE THR ILE SEQRES 24 A 410 ASN SER SER VAL GLY LEU GLU ALA ILE LEU THR GLY LYS SEQRES 25 A 410 LYS THR THR VAL LEU GLY ASP CYS SER TYR ALA PHE ILE SEQRES 26 A 410 ASN GLU LEU ALA GLY ALA SER ALA THR VAL ASN ALA ALA SEQRES 27 A 410 ALA PHE TYR LEU PHE SER TYR LEU VAL PRO PHE ASP LEU SEQRES 28 A 410 VAL PHE ASN GLN GLU TYR LEU LYS PHE ARG LEU GLY HIS SEQRES 29 A 410 PRO GLU GLU ARG GLU ILE VAL GLY LYS HIS ILE GLU PHE SEQRES 30 A 410 TYR SER ALA ASP MSE PRO GLY SER LEU SER GLN ALA ALA SEQRES 31 A 410 HIS SER LEU SER SER LEU ILE ASN GLU ALA ILE SER LEU SEQRES 32 A 410 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 410 MSE GLY LEU ALA VAL PHE LEU PRO PRO TYR PRO PHE ARG SEQRES 2 B 410 GLY LEU LYS ALA PRO TYR LEU TRP MSE PHE TYR LYS TYR SEQRES 3 B 410 LEU HIS CYS ALA THR ASP SER ILE LEU PHE ILE THR GLY SEQRES 4 B 410 GLU ASP TYR LEU SER VAL THR ASP ASP GLU ALA GLN ARG SEQRES 5 B 410 ALA ARG TRP GLU PHE ASP PRO ALA SER MSE ALA SER LEU SEQRES 6 B 410 GLY TYR GLU LEU PRO ASN ALA GLN SER MSE ALA CYS HIS SEQRES 7 B 410 GLU TYR LEU THR LEU ASP ASN ALA PHE TYR GLU THR LEU SEQRES 8 B 410 LEU SER ARG HIS HIS HIS ASP PRO ILE LYS SER PHE SER SEQRES 9 B 410 ALA PHE LEU THR GLU ARG ILE PRO ASP LEU GLU THR GLU SEQRES 10 B 410 LEU HIS ALA LEU LEU ASP SER LYS LYS GLY ILE ILE ASP SEQRES 11 B 410 GLN ILE ASP THR PHE ILE SER ILE CYS ASN CYS PRO SER SEQRES 12 B 410 LEU GLU HIS VAL ALA ARG THR LEU GLY LYS GLU VAL MSE SEQRES 13 B 410 HIS ILE GLU ILE GLY PRO LEU ARG ALA PRO MSE TYR ARG SEQRES 14 B 410 ASN THR ALA TYR LEU ASP PHE ALA GLY VAL ASN GLY GLY SEQRES 15 B 410 THR GLU ALA SER ALA ARG TYR GLU LYS CYS GLN ALA GLU SEQRES 16 B 410 PHE ASP ILE LYS ALA SER LEU GLY ASP LEU HIS ASN TYR SEQRES 17 B 410 PHE LEU GLU VAL LEU PRO PRO ALA GLU ALA ALA THR HIS SEQRES 18 B 410 SER ALA ALA GLY VAL VAL LEU GLN VAL GLU ASP ASP SER SEQRES 19 B 410 ASN LEU ILE ALA TYR ASN HIS ASP PHE THR ASN ILE SER SEQRES 20 B 410 LEU LEU SER TYR VAL ARG GLN ARG TYR GLU LYS GLU ASP SEQRES 21 B 410 ILE LEU VAL ARG ALA HIS PRO GLY SER LEU PHE ARG LEU SEQRES 22 B 410 ARG ASP ASP VAL PHE THR ILE ASP ASP SER ALA ASN SER SEQRES 23 B 410 LEU ALA PHE ILE ASN GLN CYS ASN GLU VAL PHE THR ILE SEQRES 24 B 410 ASN SER SER VAL GLY LEU GLU ALA ILE LEU THR GLY LYS SEQRES 25 B 410 LYS THR THR VAL LEU GLY ASP CYS SER TYR ALA PHE ILE SEQRES 26 B 410 ASN GLU LEU ALA GLY ALA SER ALA THR VAL ASN ALA ALA SEQRES 27 B 410 ALA PHE TYR LEU PHE SER TYR LEU VAL PRO PHE ASP LEU SEQRES 28 B 410 VAL PHE ASN GLN GLU TYR LEU LYS PHE ARG LEU GLY HIS SEQRES 29 B 410 PRO GLU GLU ARG GLU ILE VAL GLY LYS HIS ILE GLU PHE SEQRES 30 B 410 TYR SER ALA ASP MSE PRO GLY SER LEU SER GLN ALA ALA SEQRES 31 B 410 HIS SER LEU SER SER LEU ILE ASN GLU ALA ILE SER LEU SEQRES 32 B 410 GLU HIS HIS HIS HIS HIS HIS MODRES 5FA0 MSE A 21 MET MODIFIED RESIDUE MODRES 5FA0 MSE A 61 MET MODIFIED RESIDUE MODRES 5FA0 MSE A 74 MET MODIFIED RESIDUE MODRES 5FA0 MSE A 155 MET MODIFIED RESIDUE MODRES 5FA0 MSE A 166 MET MODIFIED RESIDUE MODRES 5FA0 MSE A 381 MET MODIFIED RESIDUE MODRES 5FA0 MSE B 21 MET MODIFIED RESIDUE MODRES 5FA0 MSE B 61 MET MODIFIED RESIDUE MODRES 5FA0 MSE B 74 MET MODIFIED RESIDUE MODRES 5FA0 MSE B 155 MET MODIFIED RESIDUE MODRES 5FA0 MSE B 166 MET MODIFIED RESIDUE HET MSE A 21 8 HET MSE A 61 8 HET MSE A 74 8 HET MSE A 155 8 HET MSE A 166 8 HET MSE A 381 8 HET MSE B 21 8 HET MSE B 61 8 HET MSE B 74 8 HET MSE B 155 8 HET MSE B 166 8 HET CL A 501 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *562(H2 O) HELIX 1 AA1 TYR A 18 ALA A 29 1 12 HELIX 2 AA2 GLY A 38 VAL A 44 1 7 HELIX 3 AA3 ASP A 47 ARG A 51 5 5 HELIX 4 AA4 ARG A 53 PHE A 56 5 4 HELIX 5 AA5 ASP A 57 GLY A 65 1 9 HELIX 6 AA6 ASN A 70 CYS A 76 1 7 HELIX 7 AA7 ALA A 85 ARG A 93 1 9 HELIX 8 AA8 ASP A 97 GLU A 108 1 12 HELIX 9 AA9 ILE A 110 SER A 123 1 14 HELIX 10 AB1 LYS A 124 ASP A 129 1 6 HELIX 11 AB2 CYS A 140 LEU A 150 1 11 HELIX 12 AB3 GLU A 183 GLN A 192 1 10 HELIX 13 AB4 ALA A 193 PHE A 195 5 3 HELIX 14 AB5 SER A 200 LEU A 209 1 10 HELIX 15 AB6 ASP A 232 ALA A 237 1 6 HELIX 16 AB7 THR A 243 GLN A 253 1 11 HELIX 17 AB8 GLU A 256 GLU A 258 5 3 HELIX 18 AB9 ASP A 274 PHE A 277 5 4 HELIX 19 AC1 ASN A 284 ASN A 290 1 7 HELIX 20 AC2 SER A 301 THR A 309 1 9 HELIX 21 AC3 TYR A 321 GLU A 326 1 6 HELIX 22 AC4 GLY A 329 SER A 343 1 15 HELIX 23 AC5 ASP A 349 PHE A 352 5 4 HELIX 24 AC6 ASN A 353 GLY A 362 1 10 HELIX 25 AC7 GLU A 365 SER A 378 1 14 HELIX 26 AC8 SER A 391 SER A 401 1 11 HELIX 27 AC9 TYR B 18 ALA B 29 1 12 HELIX 28 AD1 GLU B 39 VAL B 44 1 6 HELIX 29 AD2 ARG B 53 PHE B 56 5 4 HELIX 30 AD3 ASP B 57 GLY B 65 1 9 HELIX 31 AD4 ASN B 70 CYS B 76 1 7 HELIX 32 AD5 ALA B 85 ARG B 93 1 9 HELIX 33 AD6 ASP B 97 GLU B 108 1 12 HELIX 34 AD7 ILE B 110 SER B 123 1 14 HELIX 35 AD8 LYS B 124 GLN B 130 1 7 HELIX 36 AD9 CYS B 140 LEU B 150 1 11 HELIX 37 AE1 GLU B 183 CYS B 191 1 9 HELIX 38 AE2 GLN B 192 PHE B 195 5 4 HELIX 39 AE3 SER B 200 TYR B 207 1 8 HELIX 40 AE4 ASP B 232 ALA B 237 1 6 HELIX 41 AE5 THR B 243 GLN B 253 1 11 HELIX 42 AE6 GLU B 256 GLU B 258 5 3 HELIX 43 AE7 ASN B 284 ASN B 290 1 7 HELIX 44 AE8 SER B 301 THR B 309 1 9 HELIX 45 AE9 TYR B 321 GLU B 326 1 6 HELIX 46 AF1 GLY B 329 SER B 343 1 15 HELIX 47 AF2 ASP B 349 PHE B 352 5 4 HELIX 48 AF3 ASN B 353 GLY B 362 1 10 HELIX 49 AF4 GLU B 365 SER B 378 1 14 HELIX 50 AF5 SER B 391 ILE B 400 1 10 SHEET 1 AA1 7 GLU A 78 THR A 81 0 SHEET 2 AA1 7 ILE A 33 THR A 37 1 N PHE A 35 O GLU A 78 SHEET 3 AA1 7 LEU A 2 PHE A 5 1 N VAL A 4 O LEU A 34 SHEET 4 AA1 7 THR A 133 SER A 136 1 O ILE A 135 N PHE A 5 SHEET 5 AA1 7 GLU A 153 ILE A 159 1 O GLU A 153 N PHE A 134 SHEET 6 AA1 7 THR A 170 ASP A 174 -1 O TYR A 172 N GLU A 158 SHEET 7 AA1 7 VAL A 346 PRO A 347 -1 O VAL A 346 N ALA A 171 SHEET 1 AA2 5 THR A 278 ILE A 279 0 SHEET 2 AA2 5 ILE A 260 ARG A 263 1 N VAL A 262 O THR A 278 SHEET 3 AA2 5 ALA A 223 VAL A 226 1 N ALA A 223 O LEU A 261 SHEET 4 AA2 5 GLU A 294 THR A 297 1 O PHE A 296 N GLY A 224 SHEET 5 AA2 5 LYS A 312 VAL A 315 1 O LYS A 312 N VAL A 295 SHEET 1 AA3 2 PHE A 270 LEU A 272 0 SHEET 2 AA3 2 PHE B 270 LEU B 272 -1 O ARG B 271 N ARG A 271 SHEET 1 AA4 7 GLU B 78 THR B 81 0 SHEET 2 AA4 7 ILE B 33 THR B 37 1 N PHE B 35 O GLU B 78 SHEET 3 AA4 7 LEU B 2 PHE B 5 1 N LEU B 2 O LEU B 34 SHEET 4 AA4 7 THR B 133 SER B 136 1 O ILE B 135 N PHE B 5 SHEET 5 AA4 7 VAL B 154 ILE B 159 1 O MSE B 155 N PHE B 134 SHEET 6 AA4 7 THR B 170 ASP B 174 -1 O TYR B 172 N GLU B 158 SHEET 7 AA4 7 VAL B 346 PRO B 347 -1 O VAL B 346 N ALA B 171 SHEET 1 AA5 5 THR B 278 ILE B 279 0 SHEET 2 AA5 5 ILE B 260 ARG B 263 1 N VAL B 262 O THR B 278 SHEET 3 AA5 5 ALA B 223 VAL B 226 1 N VAL B 225 O ARG B 263 SHEET 4 AA5 5 GLU B 294 THR B 297 1 O PHE B 296 N GLY B 224 SHEET 5 AA5 5 LYS B 312 VAL B 315 1 O THR B 314 N VAL B 295 LINK C TRP A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N PHE A 22 1555 1555 1.33 LINK C SER A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N ALA A 62 1555 1555 1.33 LINK C SER A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N ALA A 75 1555 1555 1.33 LINK C VAL A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N HIS A 156 1555 1555 1.33 LINK C PRO A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N TYR A 167 1555 1555 1.33 LINK C ASP A 380 N MSE A 381 1555 1555 1.34 LINK C MSE A 381 N PRO A 382 1555 1555 1.35 LINK C TRP B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N PHE B 22 1555 1555 1.33 LINK C SER B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N ALA B 62 1555 1555 1.33 LINK C SER B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N ALA B 75 1555 1555 1.33 LINK C VAL B 154 N MSE B 155 1555 1555 1.33 LINK C MSE B 155 N HIS B 156 1555 1555 1.33 LINK C PRO B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N TYR B 167 1555 1555 1.33 CISPEP 1 ALA A 164 PRO A 165 0 0.44 CISPEP 2 ALA B 164 PRO B 165 0 2.53 SITE 1 AC1 4 GLU A 230 ASN A 244 HOH A 716 HOH A 867 CRYST1 82.930 82.930 120.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008284 0.00000