HEADER STRUCTURAL PROTEIN 11-DEC-15 5FAE TITLE N184K PATHOLOGICAL VARIANT OF GELSOLIN DOMAIN 2 (TRIGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GELSOLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 178-293; COMPND 5 SYNONYM: AGEL,ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DOMAIN 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GELSOLIN, AMYLOIDOSIS, CALCIUM, MUTATION, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.BONI,M.MILANI,S.RICAGNO,M.BOLOGNESI,M.DE ROSA REVDAT 2 10-JAN-24 5FAE 1 REMARK REVDAT 1 05-OCT-16 5FAE 0 JRNL AUTH F.BONI,M.MILANI,R.PORCARI,A.BARBIROLI,S.RICAGNO,M.DE ROSA JRNL TITL MOLECULAR BASIS OF A NOVEL RENAL AMYLOIDOSIS DUE TO N184K JRNL TITL 2 GELSOLIN VARIANT. JRNL REF SCI REP V. 6 33463 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27633054 JRNL DOI 10.1038/SREP33463 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6447 - 3.5361 1.00 1334 147 0.1634 0.1741 REMARK 3 2 3.5361 - 2.8069 1.00 1263 139 0.1748 0.2331 REMARK 3 3 2.8069 - 2.4521 1.00 1232 137 0.1838 0.2740 REMARK 3 4 2.4521 - 2.2279 1.00 1232 135 0.1837 0.2503 REMARK 3 5 2.2279 - 2.0683 1.00 1226 134 0.1857 0.2346 REMARK 3 6 2.0683 - 1.9463 1.00 1212 133 0.1976 0.2228 REMARK 3 7 1.9463 - 1.8489 1.00 1214 139 0.2130 0.2631 REMARK 3 8 1.8489 - 1.7684 0.99 1202 136 0.2322 0.3085 REMARK 3 9 1.7684 - 1.7003 1.00 1216 136 0.2696 0.3096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 924 REMARK 3 ANGLE : 1.538 1259 REMARK 3 CHIRALITY : 0.074 135 REMARK 3 PLANARITY : 0.009 166 REMARK 3 DIHEDRAL : 14.971 353 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9239 -8.0092 -5.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.7686 T22: 0.4641 REMARK 3 T33: 0.4133 T12: 0.0153 REMARK 3 T13: 0.1241 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 0.0230 L22: 8.3096 REMARK 3 L33: 0.2175 L12: 0.5780 REMARK 3 L13: -0.1046 L23: -1.3751 REMARK 3 S TENSOR REMARK 3 S11: -0.3881 S12: 0.2660 S13: -0.2898 REMARK 3 S21: -1.3205 S22: 0.1325 S23: -1.3556 REMARK 3 S31: 0.5686 S32: 0.0611 S33: 0.2141 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4174 22.1024 -15.8548 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2820 REMARK 3 T33: 0.1927 T12: -0.0223 REMARK 3 T13: 0.0139 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 8.1465 L22: 6.5548 REMARK 3 L33: 6.9963 L12: -4.2529 REMARK 3 L13: 2.6347 L23: -1.4275 REMARK 3 S TENSOR REMARK 3 S11: 0.3836 S12: 1.0439 S13: 0.4100 REMARK 3 S21: -0.5371 S22: -0.3867 S23: 0.0391 REMARK 3 S31: -0.1144 S32: 0.0404 S33: 0.0303 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8373 23.7135 -6.2147 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.2102 REMARK 3 T33: 0.2223 T12: -0.0966 REMARK 3 T13: -0.0369 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 5.5006 L22: 8.1783 REMARK 3 L33: 3.7791 L12: -5.8258 REMARK 3 L13: 0.3705 L23: -0.3888 REMARK 3 S TENSOR REMARK 3 S11: -0.2242 S12: 0.0974 S13: 0.6252 REMARK 3 S21: 0.3662 S22: 0.0668 S23: -0.5263 REMARK 3 S31: -0.3939 S32: 0.3528 S33: 0.1833 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4896 19.6070 -6.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.2051 REMARK 3 T33: 0.1642 T12: -0.0332 REMARK 3 T13: -0.0087 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 4.0805 L22: 6.4961 REMARK 3 L33: 4.0777 L12: -1.9919 REMARK 3 L13: 1.1191 L23: -1.2902 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: -0.1907 S13: 0.2144 REMARK 3 S21: 0.1008 S22: -0.0397 S23: 0.1266 REMARK 3 S31: -0.0690 S32: -0.1639 S33: 0.0209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0121 15.4079 -11.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.2278 REMARK 3 T33: 0.1856 T12: -0.0337 REMARK 3 T13: -0.0119 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 4.1268 L22: 6.0065 REMARK 3 L33: 5.3502 L12: -0.8446 REMARK 3 L13: 1.5246 L23: -2.5205 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: -0.0419 S13: -0.2403 REMARK 3 S21: -0.2316 S22: 0.0770 S23: 0.4015 REMARK 3 S31: 0.3680 S32: -0.3878 S33: -0.1362 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7392 18.5225 1.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.2785 REMARK 3 T33: 0.2227 T12: -0.0884 REMARK 3 T13: 0.0190 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 6.4312 L22: 3.7154 REMARK 3 L33: 4.6800 L12: 2.1223 REMARK 3 L13: 1.5077 L23: 2.4425 REMARK 3 S TENSOR REMARK 3 S11: 0.6858 S12: -1.0536 S13: 0.3290 REMARK 3 S21: 0.8687 S22: -0.5175 S23: -0.0688 REMARK 3 S31: 0.1673 S32: 0.0485 S33: -0.1110 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6517 29.5383 4.7159 REMARK 3 T TENSOR REMARK 3 T11: 0.3867 T22: 0.3864 REMARK 3 T33: 0.4401 T12: -0.0741 REMARK 3 T13: -0.1151 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 4.9488 L22: 3.8513 REMARK 3 L33: 5.3529 L12: 1.2388 REMARK 3 L13: 1.0182 L23: 4.1824 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: -0.1018 S13: 0.5511 REMARK 3 S21: 0.4448 S22: -0.6575 S23: 1.5314 REMARK 3 S31: -0.1592 S32: -0.9771 S33: 0.5830 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12405 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KCQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE 0.1 M TRIS 40% REMARK 280 PEG 400, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.20767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.41533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.41533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.20767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 156 REMARK 465 VAL A 157 REMARK 465 GLU A 258 REMARK 465 ASP A 259 REMARK 465 THR A 260 REMARK 465 ALA A 261 REMARK 465 LYS A 262 REMARK 465 GLU A 263 REMARK 465 ASP A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 465 O HOH A 472 1.98 REMARK 500 OE1 GLU A 235 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 151 CL CL A 307 4455 1.99 REMARK 500 N GLY A 148 CL CL A 307 4455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 221 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 168 -71.54 -131.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 186 O REMARK 620 2 ASP A 187 OD1 78.9 REMARK 620 3 GLU A 209 OE1 74.9 106.1 REMARK 620 4 GLU A 209 OE2 115.1 81.8 52.6 REMARK 620 5 HOH A 402 O 161.3 115.1 110.6 80.5 REMARK 620 6 HOH A 433 O 80.1 157.3 76.6 115.3 83.8 REMARK 620 7 HOH A 453 O 89.6 84.2 159.0 148.4 80.0 87.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KCQ RELATED DB: PDB REMARK 900 WILD-TYPE DBREF 5FAE A 151 266 UNP P06396 GELS_HUMAN 178 293 SEQADV 5FAE GLY A 148 UNP P06396 EXPRESSION TAG SEQADV 5FAE SER A 149 UNP P06396 EXPRESSION TAG SEQADV 5FAE HIS A 150 UNP P06396 EXPRESSION TAG SEQADV 5FAE LYS A 184 UNP P06396 ASN 211 ENGINEERED MUTATION SEQRES 1 A 119 GLY SER HIS HIS VAL VAL PRO ASN GLU VAL VAL VAL GLN SEQRES 2 A 119 ARG LEU PHE GLN VAL LYS GLY ARG ARG VAL VAL ARG ALA SEQRES 3 A 119 THR GLU VAL PRO VAL SER TRP GLU SER PHE LYS ASN GLY SEQRES 4 A 119 ASP CYS PHE ILE LEU ASP LEU GLY ASN ASN ILE HIS GLN SEQRES 5 A 119 TRP CYS GLY SER ASN SER ASN ARG TYR GLU ARG LEU LYS SEQRES 6 A 119 ALA THR GLN VAL SER LYS GLY ILE ARG ASP ASN GLU ARG SEQRES 7 A 119 SER GLY ARG ALA ARG VAL HIS VAL SER GLU GLU GLY THR SEQRES 8 A 119 GLU PRO GLU ALA MET LEU GLN VAL LEU GLY PRO LYS PRO SEQRES 9 A 119 ALA LEU PRO ALA GLY THR GLU ASP THR ALA LYS GLU ASP SEQRES 10 A 119 ALA ALA HET CA A 301 1 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET PEG A 306 7 HET CL A 307 1 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION FORMUL 2 CA CA 2+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 PEG C4 H10 O3 FORMUL 8 CL CL 1- FORMUL 9 HOH *81(H2 O) HELIX 1 AA1 SER A 179 PHE A 183 5 5 HELIX 2 AA2 ASN A 206 ARG A 225 1 20 HELIX 3 AA3 PRO A 240 GLY A 248 1 9 SHEET 1 AA1 5 ARG A 172 VAL A 176 0 SHEET 2 AA1 5 ARG A 161 LYS A 166 -1 N GLN A 164 O THR A 174 SHEET 3 AA1 5 CYS A 188 ASP A 192 -1 O CYS A 188 N VAL A 165 SHEET 4 AA1 5 ASN A 196 CYS A 201 -1 O HIS A 198 N LEU A 191 SHEET 5 AA1 5 ARG A 230 GLU A 235 1 O SER A 234 N GLN A 199 SSBOND 1 CYS A 188 CYS A 201 1555 1555 2.16 LINK O GLY A 186 CA CA A 301 1555 1555 2.23 LINK OD1 ASP A 187 CA CA A 301 1555 1555 2.49 LINK OE1 GLU A 209 CA CA A 301 1555 1555 2.62 LINK OE2 GLU A 209 CA CA A 301 1555 1555 2.33 LINK CA CA A 301 O HOH A 402 1555 1555 2.45 LINK CA CA A 301 O HOH A 433 1555 1555 2.28 LINK CA CA A 301 O HOH A 453 1555 1555 2.32 CISPEP 1 PRO A 154 ASN A 155 0 12.15 SITE 1 AC1 6 GLY A 186 ASP A 187 GLU A 209 HOH A 402 SITE 2 AC1 6 HOH A 433 HOH A 453 SITE 1 AC2 3 ARG A 168 ASN A 206 ARG A 207 SITE 1 AC3 6 GLN A 164 LYS A 166 LYS A 218 ARG A 221 SITE 2 AC3 6 HOH A 420 HOH A 428 SITE 1 AC4 6 GLY A 148 ARG A 172 ALA A 173 LYS A 212 SITE 2 AC4 6 ARG A 230 HOH A 424 SITE 1 AC5 3 ARG A 168 ASN A 206 HOH A 402 SITE 1 AC6 5 ASN A 185 TRP A 200 GLU A 239 LYS A 250 SITE 2 AC6 5 PRO A 251 SITE 1 AC7 4 GLY A 148 HIS A 151 HIS A 232 HOH A 424 CRYST1 46.919 46.919 84.623 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021313 0.012305 0.000000 0.00000 SCALE2 0.000000 0.024610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011817 0.00000