HEADER STRUCTURAL PROTEIN 11-DEC-15 5FAF TITLE N184K PATHOLOGICAL VARIANT OF GELSOLIN DOMAIN 2 (ORTHORHOMBIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GELSOLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 178-293; COMPND 5 SYNONYM: AGEL,ACTIN-DEPOLYMERIZING FACTOR,ADF,BREVIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: DOMAIN 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMYLOIDOSIS, CALCIUM, MUTATION, ACTIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.BONI,M.MILANI,S.RICAGNO,M.BOLOGNESI,M.DE ROSA REVDAT 2 10-JAN-24 5FAF 1 LINK REVDAT 1 05-OCT-16 5FAF 0 JRNL AUTH F.BONI,M.MILANI,R.PORCARI,A.BARBIROLI,S.RICAGNO,M.DE ROSA JRNL TITL MOLECULAR BASIS OF A NOVEL RENAL AMYLOIDOSIS DUE TO N184K JRNL TITL 2 GELSOLIN VARIANT. JRNL REF SCI REP V. 6 33463 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27633054 JRNL DOI 10.1038/SREP33463 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 46744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.4110 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.566 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.989 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.984 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1053 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1022 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1446 ; 2.167 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2376 ; 2.671 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 149 ; 5.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;34.452 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 196 ;12.225 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.046 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 157 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1243 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 259 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 492 ; 3.777 ; 1.578 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 490 ; 3.389 ; 1.559 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 4.034 ; 2.353 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 623 ; 4.041 ; 2.357 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 560 ; 8.431 ; 2.137 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 561 ; 8.424 ; 2.143 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 804 ; 9.214 ; 3.037 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1383 ;13.037 ;18.350 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1262 ;10.284 ;15.991 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2074 ;20.238 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 34 ;44.242 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2203 ;23.078 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 42.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KCQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000 0.1 M MES 0.2 M CALCIUM REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.09000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.09000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 GOL A 302 LIES ON A SPECIAL POSITION. REMARK 375 O2 GOL A 302 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 455 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 261 REMARK 465 LYS A 262 REMARK 465 GLU A 263 REMARK 465 ASP A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 542 O HOH A 551 1.34 REMARK 500 NE2 GLN A 164 O HOH A 401 1.61 REMARK 500 O HOH A 403 O HOH A 448 1.88 REMARK 500 CD ARG A 230 O HOH A 405 1.89 REMARK 500 NE ARG A 228 O HOH A 402 1.92 REMARK 500 O1 GOL A 305 O HOH A 403 2.01 REMARK 500 O HOH A 427 O HOH A 503 2.04 REMARK 500 O HOH A 467 O HOH A 502 2.06 REMARK 500 O HOH A 415 O HOH A 515 2.07 REMARK 500 ND1 HIS A 232 CL CL A 306 2.08 REMARK 500 NH1 ARG A 207 O HOH A 404 2.08 REMARK 500 NE2 HIS A 151 CL CL A 307 2.09 REMARK 500 N GLY A 148 CL CL A 307 2.11 REMARK 500 CL CL A 307 O HOH A 526 2.12 REMARK 500 NH1 ARG A 230 O HOH A 405 2.15 REMARK 500 O HOH A 410 O HOH A 437 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 215 O HOH A 583 1655 1.34 REMARK 500 O HOH A 422 O HOH A 466 1655 1.45 REMARK 500 O HOH A 579 O HOH A 579 2545 1.74 REMARK 500 CD GLN A 215 O HOH A 583 1655 1.96 REMARK 500 ND1 HIS A 232 CL CL A 307 3554 2.08 REMARK 500 N GLY A 148 CL CL A 306 3544 2.08 REMARK 500 NE2 HIS A 151 CL CL A 306 3544 2.10 REMARK 500 CL CL A 306 O HOH A 526 3554 2.14 REMARK 500 O HOH A 420 O HOH A 508 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 217 CB SER A 217 OG -0.133 REMARK 500 SER A 217 CB SER A 217 OG -0.168 REMARK 500 GLU A 224 CD GLU A 224 OE1 -0.077 REMARK 500 GLU A 236 CD GLU A 236 OE1 -0.106 REMARK 500 MET A 243 CB MET A 243 CG -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 243 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 169 -30.11 -132.49 REMARK 500 ARG A 228 56.08 -93.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 590 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 186 O REMARK 620 2 ASP A 187 OD1 76.3 REMARK 620 3 GLU A 209 OE1 78.1 102.6 REMARK 620 4 GLU A 209 OE2 120.3 82.6 53.1 REMARK 620 5 ASP A 259 OD1 152.1 83.8 126.0 75.3 REMARK 620 6 ASP A 259 OD2 146.4 134.2 103.0 83.2 50.4 REMARK 620 7 HOH A 462 O 74.3 148.9 81.0 121.3 119.5 72.8 REMARK 620 8 HOH A 520 O 84.5 81.8 160.3 146.3 73.4 86.6 85.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 258 OE1 REMARK 620 2 GLU A 258 OE2 51.4 REMARK 620 3 GLU A 258 OE1 0.0 51.4 REMARK 620 4 GLU A 258 OE2 51.4 0.0 51.4 REMARK 620 5 HOH A 548 O 112.9 88.5 112.9 88.5 REMARK 620 6 HOH A 548 O 155.6 152.6 155.6 152.6 75.0 REMARK 620 7 HOH A 550 O 83.9 113.7 83.9 113.7 64.5 79.1 REMARK 620 8 HOH A 550 O 138.3 91.3 138.3 91.3 79.1 64.5 134.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KCQ RELATED DB: PDB REMARK 900 WILD-TYPE DOMAIN 2 DBREF 5FAF A 151 266 UNP P06396 GELS_HUMAN 178 293 SEQADV 5FAF GLY A 148 UNP P06396 EXPRESSION TAG SEQADV 5FAF SER A 149 UNP P06396 EXPRESSION TAG SEQADV 5FAF HIS A 150 UNP P06396 EXPRESSION TAG SEQADV 5FAF LYS A 184 UNP P06396 ASN 211 ENGINEERED MUTATION SEQRES 1 A 119 GLY SER HIS HIS VAL VAL PRO ASN GLU VAL VAL VAL GLN SEQRES 2 A 119 ARG LEU PHE GLN VAL LYS GLY ARG ARG VAL VAL ARG ALA SEQRES 3 A 119 THR GLU VAL PRO VAL SER TRP GLU SER PHE LYS ASN GLY SEQRES 4 A 119 ASP CYS PHE ILE LEU ASP LEU GLY ASN ASN ILE HIS GLN SEQRES 5 A 119 TRP CYS GLY SER ASN SER ASN ARG TYR GLU ARG LEU LYS SEQRES 6 A 119 ALA THR GLN VAL SER LYS GLY ILE ARG ASP ASN GLU ARG SEQRES 7 A 119 SER GLY ARG ALA ARG VAL HIS VAL SER GLU GLU GLY THR SEQRES 8 A 119 GLU PRO GLU ALA MET LEU GLN VAL LEU GLY PRO LYS PRO SEQRES 9 A 119 ALA LEU PRO ALA GLY THR GLU ASP THR ALA LYS GLU ASP SEQRES 10 A 119 ALA ALA HET CA A 301 1 HET GOL A 302 6 HET CA A 303 1 HET GOL A 304 6 HET GOL A 305 6 HET CL A 306 1 HET CL A 307 1 HET ACT A 308 4 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 7 CL 2(CL 1-) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *190(H2 O) HELIX 1 AA1 SER A 179 PHE A 183 5 5 HELIX 2 AA2 ASN A 206 ARG A 225 1 20 HELIX 3 AA3 PRO A 240 GLY A 248 1 9 SHEET 1 AA1 5 ARG A 172 VAL A 176 0 SHEET 2 AA1 5 ARG A 161 LYS A 166 -1 N GLN A 164 O THR A 174 SHEET 3 AA1 5 CYS A 188 ASP A 192 -1 O CYS A 188 N VAL A 165 SHEET 4 AA1 5 ASN A 196 CYS A 201 -1 O HIS A 198 N LEU A 191 SHEET 5 AA1 5 ARG A 230 GLU A 235 1 O SER A 234 N GLN A 199 SSBOND 1 CYS A 188 CYS A 201 1555 1555 2.13 LINK O GLY A 186 CA CA A 301 1555 1555 2.38 LINK OD1 ASP A 187 CA CA A 301 1555 1555 2.31 LINK OE1 GLU A 209 CA CA A 301 1555 1555 2.55 LINK OE2 GLU A 209 CA CA A 301 1555 1555 2.37 LINK OE1 GLU A 258 CA CA A 303 1555 1555 2.80 LINK OE2 GLU A 258 CA CA A 303 1555 1555 2.10 LINK OE1 GLU A 258 CA CA A 303 1555 2555 2.80 LINK OE2 GLU A 258 CA CA A 303 1555 2555 2.10 LINK OD1 ASP A 259 CA CA A 301 1555 1555 2.66 LINK OD2 ASP A 259 CA CA A 301 1555 1555 2.46 LINK CA CA A 301 O HOH A 462 1555 1555 2.49 LINK CA CA A 301 O HOH A 520 1555 1555 2.38 LINK CA CA A 303 O HOH A 548 1555 1555 2.64 LINK CA CA A 303 O HOH A 548 1555 2555 2.64 LINK CA CA A 303 O HOH A 550 1555 1555 2.28 LINK CA CA A 303 O HOH A 550 1555 2555 2.28 SITE 1 AC1 6 GLY A 186 ASP A 187 GLU A 209 ASP A 259 SITE 2 AC1 6 HOH A 462 HOH A 520 SITE 1 AC2 5 VAL A 216 GLY A 219 ILE A 220 ASN A 223 SITE 2 AC2 5 GLU A 224 SITE 1 AC3 3 GLU A 258 HOH A 548 HOH A 550 SITE 1 AC4 7 ASN A 155 GLU A 239 LEU A 244 PRO A 249 SITE 2 AC4 7 LYS A 250 HOH A 451 HOH A 510 SITE 1 AC5 12 SER A 179 GLU A 181 GLN A 199 CYS A 201 SITE 2 AC5 12 ARG A 210 THR A 214 HOH A 403 HOH A 410 SITE 3 AC5 12 HOH A 411 HOH A 418 HOH A 437 HOH A 448 SITE 1 AC6 4 GLY A 148 HIS A 151 HIS A 232 HOH A 526 SITE 1 AC7 4 GLY A 148 HIS A 151 HIS A 232 HOH A 526 SITE 1 AC8 6 GLN A 164 LYS A 166 ASP A 187 GLY A 256 SITE 2 AC8 6 THR A 257 HOH A 401 CRYST1 26.390 50.120 80.180 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012472 0.00000