HEADER HYDROLASE/HYDROLASE INHIBITOR 11-DEC-15 5FAQ
TITLE OXA-48 IN COMPLEX WITH FPI-1465
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-LACTAMASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 3.5.2.6;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, KPE71T_00045;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.M.KING,D.T.KING,S.FRENCH,E.BROUILLETTE,A.ASLI,A.N.ALEXANDER,
AUTHOR 2 M.VUCKOVIC,S.N.MAITI,T.R.PARR,E.D.BROWN,F.MALOUIN,N.C.J.STRYNADKA,
AUTHOR 3 G.D.WRIGHT
REVDAT 5 23-OCT-24 5FAQ 1 REMARK
REVDAT 4 27-SEP-23 5FAQ 1 LINK
REVDAT 3 20-NOV-19 5FAQ 1 REMARK LINK
REVDAT 2 27-APR-16 5FAQ 1 JRNL
REVDAT 1 20-JAN-16 5FAQ 0
JRNL AUTH A.M.KING,D.T.KING,S.FRENCH,E.BROUILLETTE,A.ASLI,
JRNL AUTH 2 J.A.ALEXANDER,M.VUCKOVIC,S.N.MAITI,T.R.PARR,E.D.BROWN,
JRNL AUTH 3 F.MALOUIN,N.C.STRYNADKA,G.D.WRIGHT
JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF
JRNL TITL 2 DIAZABICYCLOOCTANES AS DUAL INHIBITORS OF BOTH
JRNL TITL 3 SERINE-BETA-LACTAMASES AND PENICILLIN-BINDING PROTEINS.
JRNL REF ACS CHEM.BIOL. V. 11 864 2016
JRNL REFN ESSN 1554-8937
JRNL PMID 26731698
JRNL DOI 10.1021/ACSCHEMBIO.5B00944
REMARK 2
REMARK 2 RESOLUTION. 1.96 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0071
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 40619
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.170
REMARK 3 R VALUE (WORKING SET) : 0.168
REMARK 3 FREE R VALUE : 0.210
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2124
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2976
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90
REMARK 3 BIN R VALUE (WORKING SET) : 0.1910
REMARK 3 BIN FREE R VALUE SET COUNT : 162
REMARK 3 BIN FREE R VALUE : 0.2440
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3942
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 56
REMARK 3 SOLVENT ATOMS : 424
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 16.67
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.40
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.20000
REMARK 3 B22 (A**2) : 1.21000
REMARK 3 B33 (A**2) : -0.01000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.147
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.395
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4090 ; 0.017 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 3852 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5534 ; 1.780 ; 1.926
REMARK 3 BOND ANGLES OTHERS (DEGREES): 8828 ; 0.889 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.873 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;35.418 ;24.423
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;12.944 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.202 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.183 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4638 ; 0.009 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1020 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 1.950 ; 2.274
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1931 ; 1.949 ; 2.274
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2408 ; 2.586 ; 3.396
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2409 ; 2.586 ; 3.396
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2158 ; 3.080 ; 2.608
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2159 ; 3.079 ; 2.609
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3127 ; 4.546 ; 3.790
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5203 ; 5.918 ;19.556
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4992 ; 5.716 ;19.127
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5FAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-15.
REMARK 100 THE DEPOSITION ID IS D_1000216269.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-JUL-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : CLSI
REMARK 200 BEAMLINE : 08ID-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42805
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960
REMARK 200 RESOLUTION RANGE LOW (A) : 43.640
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 7.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3HBR
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.55
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005 M COCL2, 0.005 M CDCL2, 0.005 M
REMARK 280 MGCL2, 0.005 M NICL2, 0.1 M HEPES PH 7.5, 12% W/V PEG 3350,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.38000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.48500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.73500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.48500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.38000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.73500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 CO CO B 302 CO CO B 305 1.31
REMARK 500 OG SER B 70 OAQ 5VW B 306 2.07
REMARK 500 OG SER A 70 OAQ 5VW A 305 2.09
REMARK 500 O HOH B 557 O HOH B 573 2.12
REMARK 500 O HOH A 450 O HOH B 538 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 69 -136.09 41.22
REMARK 500 ASN A 106 55.50 -96.23
REMARK 500 SER A 155 16.02 -155.60
REMARK 500 ASP A 159 20.34 -149.41
REMARK 500 ALA B 69 -132.10 47.62
REMARK 500 SER B 155 11.14 -152.31
REMARK 500 ASP B 159 24.88 -144.54
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 580 DISTANCE = 7.37 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CD A 304 CD
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 34 ND1
REMARK 620 2 GLU A 37 OE1 109.5
REMARK 620 3 GLU A 256 OE1 90.0 70.7
REMARK 620 4 HOH A 463 O 84.4 68.9 7.0
REMARK 620 5 HOH A 547 O 80.9 69.0 10.7 3.9
REMARK 620 6 HOH A 595 O 83.2 65.8 10.7 4.2 3.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CD A 301 CD
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 37 OE1
REMARK 620 2 HIS A 38 NE2 100.7
REMARK 620 3 GLU A 125 OE1 121.2 49.9
REMARK 620 4 GLU A 125 OE2 118.4 48.3 3.0
REMARK 620 5 GLU A 256 OE1 70.8 109.0 74.5 73.8
REMARK 620 6 GLU A 256 OE2 121.9 112.7 63.4 65.5 54.1
REMARK 620 7 HOH A 547 O 121.3 45.8 4.3 4.4 78.2 67.3
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CD A 303 CD
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 143 OD1
REMARK 620 2 ASP A 143 OD2 56.5
REMARK 620 3 HOH A 555 O 88.2 84.6
REMARK 620 4 HOH A 586 O 141.0 84.5 87.2
REMARK 620 5 ASP B 143 OD1 107.4 68.1 130.4 51.1
REMARK 620 6 ASP B 143 OD2 105.4 66.9 131.3 52.9 2.0
REMARK 620 7 HOH B 502 O 97.1 95.7 173.8 86.6 44.7 44.1
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CO B 302 CO
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 147 OE1
REMARK 620 2 GLU A 147 OE2 53.1
REMARK 620 3 HOH A 480 O 112.3 67.3
REMARK 620 4 GLU B 147 OE1 114.1 67.3 3.9
REMARK 620 5 GLU B 147 OE2 112.8 66.4 3.0 1.4
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CO B 305 CO
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 147 OE1
REMARK 620 2 GLU A 147 OE2 54.1
REMARK 620 3 HOH A 453 O 96.2 50.3
REMARK 620 4 HOH A 480 O 93.8 47.6 2.7
REMARK 620 5 GLU B 147 OE1 97.1 49.4 3.4 3.8
REMARK 620 6 GLU B 147 OE2 95.7 48.1 3.6 3.0 1.4
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CO B 301 CO
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 34 ND1
REMARK 620 2 GLU B 37 OE2 119.6
REMARK 620 3 GLU B 256 OE1 85.6 73.2
REMARK 620 N 1 2
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 5VW A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 305
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5FAO RELATED DB: PDB
REMARK 900 RELATED ID: 5FA7 RELATED DB: PDB
REMARK 900 RELATED ID: 5FAP RELATED DB: PDB
REMARK 900 RELATED ID: 5FAS RELATED DB: PDB
REMARK 900 RELATED ID: 5FAT RELATED DB: PDB
DBREF 5FAQ A 25 265 UNP Q6XEC0 Q6XEC0_KLEPN 25 265
DBREF 5FAQ B 25 265 UNP Q6XEC0 Q6XEC0_KLEPN 25 265
SEQRES 1 A 241 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU
SEQRES 2 A 241 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN
SEQRES 3 A 241 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN
SEQRES 4 A 241 GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN
SEQRES 5 A 241 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU
SEQRES 6 A 241 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE
SEQRES 7 A 241 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET
SEQRES 8 A 241 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG
SEQRES 9 A 241 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA
SEQRES 10 A 241 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP
SEQRES 11 A 241 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR
SEQRES 12 A 241 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS
SEQRES 13 A 241 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN
SEQRES 14 A 241 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG
SEQRES 15 A 241 ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE
SEQRES 16 A 241 GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL
SEQRES 17 A 241 TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER ASP
SEQRES 18 A 241 GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU
SEQRES 19 A 241 LYS GLN GLU LYS ILE ILE PRO
SEQRES 1 B 241 TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU
SEQRES 2 B 241 HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN
SEQRES 3 B 241 LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN
SEQRES 4 B 241 GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN
SEQRES 5 B 241 SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU
SEQRES 6 B 241 HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE
SEQRES 7 B 241 ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET
SEQRES 8 B 241 LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG
SEQRES 9 B 241 GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA
SEQRES 10 B 241 PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP
SEQRES 11 B 241 SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR
SEQRES 12 B 241 GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS
SEQRES 13 B 241 LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN
SEQRES 14 B 241 ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG
SEQRES 15 B 241 ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE
SEQRES 16 B 241 GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL
SEQRES 17 B 241 TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER ASP
SEQRES 18 B 241 GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU
SEQRES 19 B 241 LYS GLN GLU LYS ILE ILE PRO
HET CD A 301 1
HET CL A 302 1
HET CD A 303 1
HET CD A 304 1
HET 5VW A 305 41
HET CO A 306 1
HET CO B 301 1
HET CO B 302 1
HET CO B 303 1
HET CO B 304 1
HET CO B 305 1
HET 5VW B 306 41
HETNAM CD CADMIUM ION
HETNAM CL CHLORIDE ION
HETNAM 5VW [[(3~{R},6~{S})-1-METHANOYL-6-[[(3~{S})-PYRROLIDIN-3-
HETNAM 2 5VW YL]OXYCARBAMOYL]PIPERIDIN-3-YL]AMINO] HYDROGEN SULFATE
HETNAM CO COBALT (II) ION
HETSYN 5VW FPI-1465, BOUND FORM
FORMUL 3 CD 3(CD 2+)
FORMUL 4 CL CL 1-
FORMUL 7 5VW 2(C11 H20 N4 O7 S)
FORMUL 8 CO 6(CO 2+)
FORMUL 15 HOH *424(H2 O)
HELIX 1 AA1 TRP A 31 GLU A 37 1 7
HELIX 2 AA2 ASN A 58 ASN A 63 1 6
HELIX 3 AA3 PRO A 68 THR A 71 5 4
HELIX 4 AA4 PHE A 72 LEU A 83 1 12
HELIX 5 AA5 ILE A 102 ASN A 106 5 5
HELIX 6 AA6 ASN A 110 TYR A 117 1 8
HELIX 7 AA7 VAL A 119 GLY A 131 1 13
HELIX 8 AA8 GLY A 131 PHE A 142 1 12
HELIX 9 AA9 SER A 155 GLY A 160 1 6
HELIX 10 AB1 ALA A 166 HIS A 178 1 13
HELIX 11 AB2 SER A 184 MET A 195 1 12
HELIX 12 AB3 THR A 243 LEU A 247 5 5
HELIX 13 AB4 GLY A 248 GLU A 261 1 14
HELIX 14 AB5 TRP B 31 GLU B 37 1 7
HELIX 15 AB6 ASN B 58 ASN B 63 1 6
HELIX 16 AB7 PRO B 68 THR B 71 5 4
HELIX 17 AB8 PHE B 72 LEU B 83 1 12
HELIX 18 AB9 ILE B 102 ASN B 106 5 5
HELIX 19 AC1 ASN B 110 TYR B 117 1 8
HELIX 20 AC2 VAL B 119 GLY B 131 1 13
HELIX 21 AC3 GLY B 131 PHE B 142 1 12
HELIX 22 AC4 SER B 155 GLY B 160 1 6
HELIX 23 AC5 SER B 165 HIS B 178 1 14
HELIX 24 AC6 SER B 184 MET B 195 1 12
HELIX 25 AC7 THR B 243 LEU B 247 5 5
HELIX 26 AC8 GLY B 248 GLU B 261 1 14
SHEET 1 AA1 7 GLN A 26 GLU A 27 0
SHEET 2 AA1 7 GLN A 53 THR A 56 1 O GLY A 54 N GLN A 26
SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N LEU A 46 O PHE A 55
SHEET 4 AA1 7 ASN A 231 ASP A 240 -1 O ASN A 238 N VAL A 43
SHEET 5 AA1 7 ILE A 219 LEU A 228 -1 N GLY A 224 O PHE A 235
SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N GLY A 210 O TRP A 221
SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205
SHEET 1 AA2 2 ALA A 65 PHE A 66 0
SHEET 2 AA2 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66
SHEET 1 AA3 7 GLN B 26 GLU B 27 0
SHEET 2 AA3 7 GLN B 53 THR B 56 1 O GLY B 54 N GLN B 26
SHEET 3 AA3 7 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55
SHEET 4 AA3 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43
SHEET 5 AA3 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235
SHEET 6 AA3 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227
SHEET 7 AA3 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205
LINK OG SER A 70 CAP 5VW A 305 1555 1555 1.28
LINK OG SER B 70 CAP 5VW B 306 1555 1555 1.26
LINK ND1 HIS A 34 CD CD A 304 1555 4555 2.19
LINK OE1 GLU A 37 CD CD A 301 1555 4555 2.26
LINK OE1 GLU A 37 CD CD A 304 1555 4555 2.28
LINK NE2 HIS A 38 CD CD A 301 1555 4555 2.28
LINK OE1 GLU A 125 CD CD A 301 1555 1555 2.47
LINK OE2 GLU A 125 CD CD A 301 1555 1555 2.38
LINK NE2 HIS A 140 CO CO A 306 1555 3555 2.16
LINK OD1 ASP A 143 CD CD A 303 1555 1555 2.43
LINK OD2 ASP A 143 CD CD A 303 1555 1555 2.28
LINK OE1 GLU A 147 CO CO B 302 1555 3555 2.33
LINK OE2 GLU A 147 CO CO B 302 1555 3555 2.51
LINK OE1 GLU A 147 CO CO B 305 1555 3555 2.25
LINK OE2 GLU A 147 CO CO B 305 1555 3555 2.50
LINK OE1 GLU A 256 CD CD A 301 1555 4555 2.48
LINK OE2 GLU A 256 CD CD A 301 1555 4555 2.34
LINK OE1 GLU A 256 CD CD A 304 1555 4555 2.46
LINK CD CD A 301 O HOH A 547 1555 4455 2.47
LINK CD CD A 303 O HOH A 555 1555 1555 2.14
LINK CD CD A 303 O HOH A 586 1555 1555 2.43
LINK CD CD A 303 OD1 ASP B 143 3545 1555 2.40
LINK CD CD A 303 OD2 ASP B 143 3545 1555 2.30
LINK CD CD A 303 O HOH B 502 1555 3555 2.06
LINK CD CD A 304 O HOH A 463 1555 4455 2.38
LINK CD CD A 304 O HOH A 547 1555 4455 2.55
LINK CD CD A 304 O HOH A 595 1555 4455 2.32
LINK O HOH A 453 CO CO B 305 3545 1555 2.02
LINK O HOH A 480 CO CO B 302 3545 1555 1.83
LINK O HOH A 480 CO CO B 305 3545 1555 2.60
LINK ND1 HIS B 34 CO CO B 301 1555 1555 2.36
LINK OE2 GLU B 37 CO CO B 301 1555 1555 2.44
LINK NE2 HIS B 140 CO CO B 303 1555 1555 2.28
LINK OE1 GLU B 147 CO CO B 302 1555 1555 2.31
LINK OE2 GLU B 147 CO CO B 302 1555 1555 2.56
LINK OE1 GLU B 147 CO CO B 305 1555 1555 2.38
LINK OE2 GLU B 147 CO CO B 305 1555 1555 2.61
LINK OE1 GLU B 256 CO CO B 301 1555 1555 2.45
LINK CO CO B 304 O HOH B 572 1555 1555 2.48
CISPEP 1 GLU A 216 PRO A 217 0 -2.81
CISPEP 2 GLU B 216 PRO B 217 0 -4.75
SITE 1 AC1 6 GLU A 37 HIS A 38 GLU A 125 GLU A 256
SITE 2 AC1 6 CD A 304 HOH A 547
SITE 1 AC2 2 ARG A 206 ARG B 206
SITE 1 AC3 5 ASP A 143 HOH A 555 HOH A 586 ASP B 143
SITE 2 AC3 5 HOH B 502
SITE 1 AC4 7 HIS A 34 GLU A 37 GLU A 256 CD A 301
SITE 2 AC4 7 HOH A 463 HOH A 547 HOH A 595
SITE 1 AC5 15 ALA A 69 SER A 70 ASP A 101 ILE A 102
SITE 2 AC5 15 SER A 118 VAL A 120 LYS A 208 THR A 209
SITE 3 AC5 15 GLY A 210 TYR A 211 ARG A 250 HOH A 479
SITE 4 AC5 15 HOH A 499 HOH A 538 HOH A 541
SITE 1 AC6 1 HIS A 140
SITE 1 AC7 3 HIS B 34 GLU B 37 GLU B 256
SITE 1 AC8 6 HIS A 140 GLU A 147 HOH A 453 HOH A 480
SITE 2 AC8 6 GLU B 147 CO B 305
SITE 1 AC9 1 HIS B 140
SITE 1 AD1 3 HIS A 178 HIS B 90 HOH B 572
SITE 1 AD2 6 GLU A 147 HOH A 453 HOH A 480 HIS B 140
SITE 2 AD2 6 GLU B 147 CO B 302
CRYST1 72.760 75.470 106.970 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013744 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013250 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009348 0.00000