HEADER HYDROLASE/HYDROLASE INHIBITOR 11-DEC-15 5FAS TITLE OXA-48 IN COMPLEX WITH FPI-1523 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, KPE71T_00045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.KING,D.T.KING,S.FRENCH,E.BROUILLETTE,A.ASLI,A.N.ALEXANDER, AUTHOR 2 M.VUCKOVIC,S.N.MAITI,T.R.PARR,E.D.BROWN,F.MALOUIN,N.C.J.STRYNADKA, AUTHOR 3 G.D.WRIGHT REVDAT 5 27-SEP-23 5FAS 1 LINK REVDAT 4 20-NOV-19 5FAS 1 LINK REVDAT 3 20-SEP-17 5FAS 1 REMARK REVDAT 2 27-APR-16 5FAS 1 JRNL REVDAT 1 20-JAN-16 5FAS 0 JRNL AUTH A.M.KING,D.T.KING,S.FRENCH,E.BROUILLETTE,A.ASLI, JRNL AUTH 2 J.A.ALEXANDER,M.VUCKOVIC,S.N.MAITI,T.R.PARR,E.D.BROWN, JRNL AUTH 3 F.MALOUIN,N.C.STRYNADKA,G.D.WRIGHT JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF JRNL TITL 2 DIAZABICYCLOOCTANES AS DUAL INHIBITORS OF BOTH JRNL TITL 3 SERINE-BETA-LACTAMASES AND PENICILLIN-BINDING PROTEINS. JRNL REF ACS CHEM.BIOL. V. 11 864 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 26731698 JRNL DOI 10.1021/ACSCHEMBIO.5B00944 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4204 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 249 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3951 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 459 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4097 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3850 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5540 ; 1.558 ; 1.918 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8817 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;35.736 ;24.450 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;13.065 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4703 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1025 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 2.654 ; 2.245 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1931 ; 2.654 ; 2.247 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2415 ; 3.177 ; 3.357 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2413 ; 3.161 ; 3.353 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2167 ; 4.165 ; 2.617 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2168 ; 4.165 ; 2.618 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3126 ; 5.722 ; 3.780 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5183 ; 6.910 ;19.482 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4971 ; 6.782 ;18.974 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61458 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 43.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005 M COCL2, 0.005 M CDCL2, 0.005 M REMARK 280 MGCL2, 0.005 M NICL2, 0.1 M HEPES PH 7.5, 12% W/V PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.33500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.33500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CO CO A 305 CO CO A 306 1.29 REMARK 500 O HOH A 583 O HOH A 600 2.13 REMARK 500 O HOH A 476 O HOH A 541 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -133.71 49.89 REMARK 500 ASN A 106 54.70 -95.20 REMARK 500 SER A 155 5.42 -151.31 REMARK 500 ASP A 159 16.28 -147.14 REMARK 500 ALA B 69 -135.29 45.03 REMARK 500 SER B 155 8.94 -151.12 REMARK 500 ASP B 159 23.20 -155.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 307 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 ND1 REMARK 620 2 GLU A 37 OE2 103.5 REMARK 620 3 GLU A 256 OE1 90.8 70.4 REMARK 620 4 HOH A 572 O 170.6 80.7 82.6 REMARK 620 5 HOH A 613 O 100.2 154.1 99.0 74.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 OE2 REMARK 620 2 HIS A 38 NE2 101.3 REMARK 620 3 GLU A 125 OE1 118.6 49.4 REMARK 620 4 GLU A 125 OE2 121.3 50.7 2.9 REMARK 620 5 GLU A 256 OE1 70.4 108.7 72.7 73.6 REMARK 620 6 GLU A 256 OE2 120.9 113.0 64.7 62.9 53.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 302 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 140 NE2 REMARK 620 2 HOH A 581 O 19.6 REMARK 620 3 HOH A 611 O 19.8 2.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 143 OD1 REMARK 620 2 ASP A 143 OD2 56.9 REMARK 620 3 HOH A 448 O 91.9 90.2 REMARK 620 4 HOH A 606 O 140.3 83.4 89.6 REMARK 620 5 ASP B 143 OD1 105.2 66.1 43.1 53.3 REMARK 620 6 ASP B 143 OD2 103.2 64.9 42.4 55.1 2.0 REMARK 620 7 HOH B 488 O 88.7 87.6 176.9 88.0 133.8 134.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 305 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 147 OE1 REMARK 620 2 GLU A 147 OE2 53.7 REMARK 620 3 GLU B 147 OE1 95.3 47.3 REMARK 620 4 GLU B 147 OE2 94.1 46.1 1.3 REMARK 620 5 HOH B 436 O 131.0 85.4 66.5 67.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 306 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 147 OE1 REMARK 620 2 GLU A 147 OE2 52.2 REMARK 620 3 HOH A 438 O 139.7 89.2 REMARK 620 4 GLU B 147 OE1 112.4 66.2 28.3 REMARK 620 5 GLU B 147 OE2 111.2 65.4 29.6 1.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 303 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 34 ND1 REMARK 620 2 GLU B 37 OE2 115.3 REMARK 620 3 GLU B 256 OE2 81.6 108.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 140 NE2 REMARK 620 2 HOH B 527 O 94.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5VR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FAO RELATED DB: PDB REMARK 900 RELATED ID: 5FA7 RELATED DB: PDB REMARK 900 RELATED ID: 5FAP RELATED DB: PDB REMARK 900 RELATED ID: 5FAQ RELATED DB: PDB REMARK 900 RELATED ID: 5FAT RELATED DB: PDB DBREF 5FAS A 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 5FAS B 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 SEQRES 1 A 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 A 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 A 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 A 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 A 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 A 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 A 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 A 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 A 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 A 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 A 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 A 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 A 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 A 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 A 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 A 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 A 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 A 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 A 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 B 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 B 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 B 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 B 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 B 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 B 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 B 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 B 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 B 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 B 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 B 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 B 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 B 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 B 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 B 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 B 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 B 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 B 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 B 242 LEU LYS GLN GLU LYS ILE ILE PRO HET 5VR A 301 21 HET CL A 302 1 HET CD A 303 1 HET CD A 304 1 HET CO A 305 1 HET CO A 306 1 HET CO A 307 1 HET CO B 301 1 HET CO B 302 1 HET CO B 303 1 HET 5VR B 304 21 HET CO B 305 1 HETNAM 5VR [[(3~{R},6~{S})-6-(ACETAMIDOCARBAMOYL)-1-METHANOYL- HETNAM 2 5VR PIPERIDIN-3-YL]AMINO] HYDROGEN SULFATE HETNAM CL CHLORIDE ION HETNAM CD CADMIUM ION HETNAM CO COBALT (II) ION FORMUL 3 5VR 2(C9 H16 N4 O7 S) FORMUL 4 CL CL 1- FORMUL 5 CD 2(CD 2+) FORMUL 7 CO 7(CO 2+) FORMUL 15 HOH *459(H2 O) HELIX 1 AA1 TRP A 31 GLU A 37 1 7 HELIX 2 AA2 ASN A 58 ASN A 63 1 6 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASN A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 GLY A 131 1 13 HELIX 8 AA8 GLY A 131 PHE A 142 1 12 HELIX 9 AA9 SER A 155 GLY A 160 1 6 HELIX 10 AB1 ALA A 166 HIS A 178 1 13 HELIX 11 AB2 SER A 184 MET A 195 1 12 HELIX 12 AB3 THR A 243 LEU A 247 5 5 HELIX 13 AB4 GLY A 248 GLU A 261 1 14 HELIX 14 AB5 TRP B 31 HIS B 38 1 8 HELIX 15 AB6 ASN B 58 ASN B 63 1 6 HELIX 16 AB7 PRO B 68 THR B 71 5 4 HELIX 17 AB8 PHE B 72 LEU B 83 1 12 HELIX 18 AB9 ILE B 102 ASN B 106 5 5 HELIX 19 AC1 ASN B 110 TYR B 117 1 8 HELIX 20 AC2 VAL B 119 GLY B 131 1 13 HELIX 21 AC3 GLY B 131 PHE B 142 1 12 HELIX 22 AC4 SER B 155 GLY B 160 1 6 HELIX 23 AC5 ALA B 166 HIS B 178 1 13 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 SHEET 1 AA1 7 TRP A 25 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O GLY A 54 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N LEU A 46 O PHE A 55 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 2 ALA A 65 PHE A 66 0 SHEET 2 AA2 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 SHEET 1 AA3 7 GLN B 26 GLU B 27 0 SHEET 2 AA3 7 GLN B 53 THR B 56 1 O GLY B 54 N GLN B 26 SHEET 3 AA3 7 GLY B 42 ASN B 48 -1 N ASN B 48 O GLN B 53 SHEET 4 AA3 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA3 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA3 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA3 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 AA4 2 ALA B 65 PHE B 66 0 SHEET 2 AA4 2 ILE B 164 SER B 165 -1 O ILE B 164 N PHE B 66 LINK OG SER A 70 CAM 5VR A 301 1555 1555 1.35 LINK OG SER B 70 CAM 5VR B 304 1555 1555 1.33 LINK ND1 HIS A 34 CO CO A 307 1555 1555 2.06 LINK OE2 GLU A 37 CD CD A 304 1555 1555 2.35 LINK OE2 GLU A 37 CO CO A 307 1555 1555 2.25 LINK NE2 HIS A 38 CD CD A 304 1555 1555 2.25 LINK OE1 GLU A 125 CD CD A 304 1555 4455 2.35 LINK OE2 GLU A 125 CD CD A 304 1555 4455 2.37 LINK NE2 HIS A 140 CO CO B 302 1555 3555 2.61 LINK OD1 ASP A 143 CD CD A 303 1555 1555 2.37 LINK OD2 ASP A 143 CD CD A 303 1555 1555 2.28 LINK OE1 GLU A 147 CO CO A 305 1555 1555 2.23 LINK OE2 GLU A 147 CO CO A 305 1555 1555 2.47 LINK OE1 GLU A 147 CO CO A 306 1555 1555 2.37 LINK OE2 GLU A 147 CO CO A 306 1555 1555 2.47 LINK OE1 GLU A 256 CD CD A 304 1555 1555 2.40 LINK OE2 GLU A 256 CD CD A 304 1555 1555 2.34 LINK OE1 GLU A 256 CO CO A 307 1555 1555 2.48 LINK CD CD A 303 O HOH A 448 1555 1555 2.36 LINK CD CD A 303 O HOH A 606 1555 1555 2.44 LINK CD CD A 303 OD1 ASP B 143 3545 1555 2.36 LINK CD CD A 303 OD2 ASP B 143 3545 1555 2.38 LINK CD CD A 303 O HOH B 488 1555 3555 2.21 LINK CO CO A 305 OE1 GLU B 147 3545 1555 2.41 LINK CO CO A 305 OE2 GLU B 147 3545 1555 2.50 LINK CO CO A 305 O HOH B 436 1555 3555 2.11 LINK CO CO A 306 O HOH A 438 1555 1555 2.04 LINK CO CO A 306 OE1 GLU B 147 3545 1555 2.28 LINK CO CO A 306 OE2 GLU B 147 3545 1555 2.39 LINK CO CO A 307 O HOH A 572 1555 1555 2.35 LINK CO CO A 307 O HOH A 613 1555 1555 2.16 LINK O HOH A 581 CO CO B 302 3545 1555 2.07 LINK O HOH A 611 CO CO B 302 3545 1555 1.76 LINK O HOH A 648 CO CO B 305 1555 1555 2.24 LINK ND1 HIS B 34 CO CO B 303 1555 1555 2.32 LINK OE2 GLU B 37 CO CO B 303 1555 1555 2.15 LINK NE2 HIS B 140 CO CO B 301 1555 1555 2.13 LINK OE2 GLU B 256 CO CO B 303 1555 1555 2.44 LINK CO CO B 301 O HOH B 527 1555 1555 1.98 CISPEP 1 GLU A 216 PRO A 217 0 -1.85 CISPEP 2 GLU B 216 PRO B 217 0 -1.10 SITE 1 AC1 13 ALA A 69 SER A 70 SER A 118 VAL A 120 SITE 2 AC1 13 LYS A 208 THR A 209 GLY A 210 TYR A 211 SITE 3 AC1 13 THR A 213 ARG A 214 ARG A 250 HOH A 511 SITE 4 AC1 13 HOH A 517 SITE 1 AC2 2 ARG A 206 ARG B 206 SITE 1 AC3 5 ASP A 143 HOH A 448 HOH A 606 ASP B 143 SITE 2 AC3 5 HOH B 488 SITE 1 AC4 6 GLU A 37 HIS A 38 GLU A 125 GLU A 256 SITE 2 AC4 6 CO A 307 HOH A 572 SITE 1 AC5 6 GLU A 147 CO A 306 HOH A 438 HIS B 140 SITE 2 AC5 6 GLU B 147 HOH B 436 SITE 1 AC6 6 HIS A 140 GLU A 147 CO A 305 HOH A 438 SITE 2 AC6 6 GLU B 147 HOH B 436 SITE 1 AC7 6 HIS A 34 GLU A 37 GLU A 256 CD A 304 SITE 2 AC7 6 HOH A 572 HOH A 613 SITE 1 AC8 2 HIS B 140 HOH B 527 SITE 1 AC9 3 HIS A 140 HOH A 581 HOH A 611 SITE 1 AD1 3 HIS B 34 GLU B 37 GLU B 256 SITE 1 AD2 3 HIS A 178 HOH A 648 HIS B 90 CRYST1 73.080 75.800 106.670 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009375 0.00000