HEADER TRANSCRIPTION/STRUCTURAL PROTEIN 13-DEC-15 5FB0 TITLE CRYSTAL STRUCTURE OF A PHD FINGER BOUND TO HISTONE H3 T3PH PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR AUTOANTIGEN SP-100; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 696-878; COMPND 5 SYNONYM: SP100 NUCLEAR ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE FROM HISTONE H3; COMPND 10 CHAIN: D, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SP100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: CHEMICALLY SYNTHESIZED H3 PEPTIDE 1-15 WITH T3PH SOURCE 17 MODIFICATION KEYWDS ZINC FINGER PROTEIN, BROMODOMAIN, TRANSCRIPTION-STRUCTURAL PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,X.ZHANG REVDAT 2 22-JUN-16 5FB0 1 JRNL REVDAT 1 04-MAY-16 5FB0 0 JRNL AUTH X.ZHANG,D.ZHAO,X.XIONG,Z.HE,H.LI JRNL TITL MULTIFACETED HISTONE H3 METHYLATION AND PHOSPHORYLATION JRNL TITL 2 READOUT BY THE PLANT HOMEODOMAIN FINGER OF HUMAN NUCLEAR JRNL TITL 3 ANTIGEN SP100C JRNL REF J.BIOL.CHEM. V. 291 12786 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27129259 JRNL DOI 10.1074/JBC.M116.721159 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1457 - 5.6120 1.00 1262 113 0.2050 0.2348 REMARK 3 2 5.6120 - 4.4582 1.00 1185 158 0.2106 0.2633 REMARK 3 3 4.4582 - 3.8957 1.00 1179 155 0.2015 0.2405 REMARK 3 4 3.8957 - 3.5400 1.00 1210 132 0.2009 0.2683 REMARK 3 5 3.5400 - 3.2866 1.00 1218 116 0.2356 0.2867 REMARK 3 6 3.2866 - 3.0930 1.00 1200 117 0.2565 0.2983 REMARK 3 7 3.0930 - 2.9382 1.00 1207 139 0.2539 0.3401 REMARK 3 8 2.9382 - 2.8104 1.00 1160 172 0.2813 0.3490 REMARK 3 9 2.8104 - 2.7022 1.00 1173 136 0.2866 0.3870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3083 REMARK 3 ANGLE : 0.635 4138 REMARK 3 CHIRALITY : 0.040 423 REMARK 3 PLANARITY : 0.006 538 REMARK 3 DIHEDRAL : 19.645 1884 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.7922 -16.0057 13.4019 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2494 REMARK 3 T33: 0.2144 T12: -0.0571 REMARK 3 T13: -0.0029 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: -0.2409 L22: 1.3103 REMARK 3 L33: -1.0320 L12: -0.1344 REMARK 3 L13: 0.0378 L23: -0.6822 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.0439 S13: -0.0020 REMARK 3 S21: 0.0061 S22: -0.0158 S23: -0.0719 REMARK 3 S31: -0.0068 S32: 0.2320 S33: -0.0172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 695:719 OR (RESID REMARK 3 720 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O )) OR RESSEQ 721:724 OR (RESID 725 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME ND1 OR NAME CE1 OR NAME NE2)) REMARK 3 OR (RESID 726 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME OE1 REMARK 3 OR NAME OE2)) OR RESSEQ 727:749 OR (RESID REMARK 3 750 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG1 OR NAME CD1)) OR (RESID 751 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME CG REMARK 3 OR NAME CD OR NAME OE1 OR NAME NE2)) OR REMARK 3 (RESID 752 AND (NAME1 REMARK 3 SELECTION : (CHAIN C AND (RESSEQ 695:719 OR (RESID REMARK 3 720 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O )) OR RESSEQ 721:724 OR (RESID 725 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME ND1 OR NAME CE1 OR NAME NE2)) REMARK 3 OR (RESID 726 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME CD OR NAME OE1 REMARK 3 OR NAME OE2)) OR RESSEQ 727:749 OR (RESID REMARK 3 750 AND (NAME O OR NAME N OR NAME C OR REMARK 3 NAME CB OR NAME CG2)) OR (RESID 751 AND REMARK 3 (NAME O OR NAME N OR NAME C OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME OE1)) OR REMARK 3 (RESID 752 AND (NAME O OR 2 REMARK 3 ATOM PAIRS NUMBER : 1549 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN F REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 92 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM CITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.91500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.91500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 755 REMARK 465 GLU A 756 REMARK 465 SER A 757 REMARK 465 GLN A 758 REMARK 465 SER A 759 REMARK 465 ASN A 802 REMARK 465 ARG A 803 REMARK 465 GLU A 804 REMARK 465 GLY A 805 REMARK 465 SER A 806 REMARK 465 GLN A 807 REMARK 465 SER A 878 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 PRO C 755 REMARK 465 GLU C 756 REMARK 465 SER C 757 REMARK 465 GLN C 758 REMARK 465 TYR C 800 REMARK 465 TYR C 801 REMARK 465 ASN C 802 REMARK 465 ARG C 803 REMARK 465 GLU C 804 REMARK 465 GLY C 805 REMARK 465 SER C 806 REMARK 465 GLN C 807 REMARK 465 THR C 877 REMARK 465 SER C 878 REMARK 465 THR F 11 REMARK 465 GLY F 12 REMARK 465 GLY F 13 REMARK 465 LYS F 14 REMARK 465 ALA F 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 707 -66.09 -92.82 REMARK 500 ARG A 753 42.28 -141.38 REMARK 500 PRO A 799 -171.43 -62.33 REMARK 500 LYS D 9 70.39 -103.38 REMARK 500 VAL C 707 -66.49 -92.47 REMARK 500 LYS F 9 71.81 -106.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 705 SG REMARK 620 2 CYS A 708 SG 114.0 REMARK 620 3 HIS A 725 ND1 94.7 106.0 REMARK 620 4 CYS A 728 SG 111.5 105.6 125.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 717 SG REMARK 620 2 CYS A 720 SG 108.2 REMARK 620 3 CYS A 742 SG 112.0 99.9 REMARK 620 4 CYS A 745 SG 111.5 110.7 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 705 SG REMARK 620 2 CYS C 708 SG 116.5 REMARK 620 3 HIS C 725 ND1 94.7 104.8 REMARK 620 4 CYS C 728 SG 118.4 103.3 118.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 717 SG REMARK 620 2 CYS C 720 SG 110.7 REMARK 620 3 CYS C 742 SG 113.0 98.2 REMARK 620 4 CYS C 745 SG 118.1 102.1 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FB1 RELATED DB: PDB DBREF 5FB0 A 696 878 UNP P23497 SP100_HUMAN 696 878 DBREF 5FB0 D 1 15 UNP K7EMV3 K7EMV3_HUMAN 2 16 DBREF 5FB0 C 696 878 UNP P23497 SP100_HUMAN 696 878 DBREF 5FB0 F 1 15 UNP K7EMV3 K7EMV3_HUMAN 2 16 SEQADV 5FB0 SER A 695 UNP P23497 EXPRESSION TAG SEQADV 5FB0 SER A 754 UNP P23497 CYS 754 ENGINEERED MUTATION SEQADV 5FB0 GLN A 772 UNP P23497 LEU 772 ENGINEERED MUTATION SEQADV 5FB0 SER A 793 UNP P23497 CYS 793 ENGINEERED MUTATION SEQADV 5FB0 SER C 695 UNP P23497 EXPRESSION TAG SEQADV 5FB0 SER C 754 UNP P23497 CYS 754 ENGINEERED MUTATION SEQADV 5FB0 GLN C 772 UNP P23497 LEU 772 ENGINEERED MUTATION SEQADV 5FB0 SER C 793 UNP P23497 CYS 793 ENGINEERED MUTATION SEQRES 1 A 184 SER ASP PRO CYS PRO GLU ASN SER ASN ILE CYS GLU VAL SEQRES 2 A 184 CYS ASN LYS TRP GLY ARG LEU PHE CYS CYS ASP THR CYS SEQRES 3 A 184 PRO ARG SER PHE HIS GLU HIS CYS HIS ILE PRO SER VAL SEQRES 4 A 184 GLU ALA ASN LYS ASN PRO TRP SER CYS ILE PHE CYS ARG SEQRES 5 A 184 ILE LYS THR ILE GLN GLU ARG SER PRO GLU SER GLN SER SEQRES 6 A 184 GLY HIS GLN GLU SER GLU VAL LEU MET ARG GLN MET GLN SEQRES 7 A 184 PRO GLU GLU GLN LEU LYS CYS GLU PHE LEU LEU LEU LYS SEQRES 8 A 184 VAL TYR CYS ASP SER LYS SER SER PHE PHE ALA SER GLU SEQRES 9 A 184 PRO TYR TYR ASN ARG GLU GLY SER GLN GLY PRO GLN LYS SEQRES 10 A 184 PRO MET TRP LEU ASN LYS VAL LYS THR SER LEU ASN GLU SEQRES 11 A 184 GLN MET TYR THR ARG VAL GLU GLY PHE VAL GLN ASP MET SEQRES 12 A 184 ARG LEU ILE PHE HIS ASN HIS LYS GLU PHE TYR ARG GLU SEQRES 13 A 184 ASP LYS PHE THR ARG LEU GLY ILE GLN VAL GLN ASP ILE SEQRES 14 A 184 PHE GLU LYS ASN PHE ARG ASN ILE PHE ALA ILE GLN GLU SEQRES 15 A 184 THR SER SEQRES 1 D 15 ALA ARG TPO LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 15 LYS ALA SEQRES 1 C 184 SER ASP PRO CYS PRO GLU ASN SER ASN ILE CYS GLU VAL SEQRES 2 C 184 CYS ASN LYS TRP GLY ARG LEU PHE CYS CYS ASP THR CYS SEQRES 3 C 184 PRO ARG SER PHE HIS GLU HIS CYS HIS ILE PRO SER VAL SEQRES 4 C 184 GLU ALA ASN LYS ASN PRO TRP SER CYS ILE PHE CYS ARG SEQRES 5 C 184 ILE LYS THR ILE GLN GLU ARG SER PRO GLU SER GLN SER SEQRES 6 C 184 GLY HIS GLN GLU SER GLU VAL LEU MET ARG GLN MET GLN SEQRES 7 C 184 PRO GLU GLU GLN LEU LYS CYS GLU PHE LEU LEU LEU LYS SEQRES 8 C 184 VAL TYR CYS ASP SER LYS SER SER PHE PHE ALA SER GLU SEQRES 9 C 184 PRO TYR TYR ASN ARG GLU GLY SER GLN GLY PRO GLN LYS SEQRES 10 C 184 PRO MET TRP LEU ASN LYS VAL LYS THR SER LEU ASN GLU SEQRES 11 C 184 GLN MET TYR THR ARG VAL GLU GLY PHE VAL GLN ASP MET SEQRES 12 C 184 ARG LEU ILE PHE HIS ASN HIS LYS GLU PHE TYR ARG GLU SEQRES 13 C 184 ASP LYS PHE THR ARG LEU GLY ILE GLN VAL GLN ASP ILE SEQRES 14 C 184 PHE GLU LYS ASN PHE ARG ASN ILE PHE ALA ILE GLN GLU SEQRES 15 C 184 THR SER SEQRES 1 F 15 ALA ARG TPO LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 F 15 LYS ALA MODRES 5FB0 TPO D 3 THR MODIFIED RESIDUE MODRES 5FB0 TPO F 3 THR MODIFIED RESIDUE HET TPO D 3 11 HET TPO F 3 11 HET ZN A 901 1 HET ZN A 902 1 HET ZN C 901 1 HET ZN C 902 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO 2(C4 H10 N O6 P) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *24(H2 O) HELIX 1 AA1 CYS A 742 GLU A 752 1 11 HELIX 2 AA2 GLN A 762 MET A 768 1 7 HELIX 3 AA3 GLN A 772 CYS A 788 1 17 HELIX 4 AA4 ASP A 789 ALA A 796 5 8 HELIX 5 AA5 TRP A 814 GLU A 824 1 11 HELIX 6 AA6 ARG A 829 TYR A 848 1 20 HELIX 7 AA7 GLU A 850 PHE A 872 1 23 HELIX 8 AA8 CYS C 742 SER C 754 1 13 HELIX 9 AA9 GLN C 762 ARG C 769 1 8 HELIX 10 AB1 GLN C 772 CYS C 788 1 17 HELIX 11 AB2 ASP C 789 ALA C 796 5 8 HELIX 12 AB3 TRP C 814 GLU C 824 1 11 HELIX 13 AB4 ARG C 829 TYR C 848 1 20 HELIX 14 AB5 GLU C 850 ALA C 873 1 24 SHEET 1 AA1 3 SER A 723 HIS A 725 0 SHEET 2 AA1 3 GLY A 712 CYS A 716 -1 N PHE A 715 O PHE A 724 SHEET 3 AA1 3 ARG D 2 THR D 6 -1 O ARG D 2 N CYS A 716 SHEET 1 AA2 3 SER C 723 HIS C 725 0 SHEET 2 AA2 3 GLY C 712 CYS C 716 -1 N PHE C 715 O PHE C 724 SHEET 3 AA2 3 ARG F 2 THR F 6 -1 O ARG F 2 N CYS C 716 LINK SG CYS A 705 ZN ZN A 901 1555 1555 2.56 LINK SG CYS A 708 ZN ZN A 901 1555 1555 2.32 LINK SG CYS A 717 ZN ZN A 902 1555 1555 2.37 LINK SG CYS A 720 ZN ZN A 902 1555 1555 2.29 LINK ND1 HIS A 725 ZN ZN A 901 1555 1555 2.18 LINK SG CYS A 728 ZN ZN A 901 1555 1555 2.50 LINK SG CYS A 742 ZN ZN A 902 1555 1555 2.34 LINK SG CYS A 745 ZN ZN A 902 1555 1555 2.40 LINK C ARG D 2 N TPO D 3 1555 1555 1.33 LINK C TPO D 3 N LYS D 4 1555 1555 1.33 LINK SG CYS C 705 ZN ZN C 901 1555 1555 2.48 LINK SG CYS C 708 ZN ZN C 901 1555 1555 2.34 LINK SG CYS C 717 ZN ZN C 902 1555 1555 2.35 LINK SG CYS C 720 ZN ZN C 902 1555 1555 2.39 LINK ND1 HIS C 725 ZN ZN C 901 1555 1555 2.28 LINK SG CYS C 728 ZN ZN C 901 1555 1555 2.50 LINK SG CYS C 742 ZN ZN C 902 1555 1555 2.28 LINK SG CYS C 745 ZN ZN C 902 1555 1555 2.51 LINK C ARG F 2 N TPO F 3 1555 1555 1.33 LINK C TPO F 3 N LYS F 4 1555 1555 1.33 CISPEP 1 ILE A 730 PRO A 731 0 -3.08 CISPEP 2 ASN A 738 PRO A 739 0 2.88 CISPEP 3 ILE C 730 PRO C 731 0 -2.74 CISPEP 4 ASN C 738 PRO C 739 0 3.09 SITE 1 AC1 4 CYS A 705 CYS A 708 HIS A 725 CYS A 728 SITE 1 AC2 5 CYS A 717 THR A 719 CYS A 720 CYS A 742 SITE 2 AC2 5 CYS A 745 SITE 1 AC3 4 CYS C 705 CYS C 708 HIS C 725 CYS C 728 SITE 1 AC4 5 CYS C 717 THR C 719 CYS C 720 CYS C 742 SITE 2 AC4 5 CYS C 745 CRYST1 83.830 99.160 53.716 90.00 93.17 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011929 0.000000 0.000661 0.00000 SCALE2 0.000000 0.010085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018645 0.00000