HEADER HYDROLASE 14-DEC-15 5FBA TITLE S1 NUCLEASE FROM ASPERGILLUS ORYZAE IN COMPLEX WITH PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE S1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEOXYRIBONUCLEASE S1,ENDONUCLEASE S1,SINGLE-STRANDED- COMPND 5 NUCLEATE ENDONUCLEASE; COMPND 6 EC: 3.1.30.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: MATURE PROTEIN WITHOUT SIGNAL SEQUENCE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE RIB40; SOURCE 3 ORGANISM_COMMON: YELLOW KOJI MOLD; SOURCE 4 ORGANISM_TAXID: 510516; SOURCE 5 GENE: NUCS, AO090001000075; SOURCE 6 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS ENDONUCLEASE, ZINC DEPENDENT, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KOVAL,L.H.OESTERGAARD,J.DOHNALEK REVDAT 4 10-JAN-24 5FBA 1 HETSYN REVDAT 3 29-JUL-20 5FBA 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 11-JAN-17 5FBA 1 JRNL REVDAT 1 28-DEC-16 5FBA 0 JRNL AUTH T.KOVAL,L.H.STERGAARD,J.LEHMBECK,A.NRGAARD,P.LIPOVOVA, JRNL AUTH 2 J.DUSKOVA,T.SKALOVA,M.TRUNDOVA,P.KOLENKO,K.FEJFAROVA, JRNL AUTH 3 J.STRANSKY,L.SVECOVA,J.HASEK,J.DOHNALEK JRNL TITL STRUCTURAL AND CATALYTIC PROPERTIES OF S1 NUCLEASE FROM JRNL TITL 2 ASPERGILLUS ORYZAE RESPONSIBLE FOR SUBSTRATE RECOGNITION, JRNL TITL 3 CLEAVAGE, NON-SPECIFICITY, AND INHIBITION. JRNL REF PLOS ONE V. 11 68832 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 28036383 JRNL DOI 10.1371/JOURNAL.PONE.0168832 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 20820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1000 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 2.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2148 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1888 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2937 ; 1.688 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4375 ; 1.066 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 6.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;38.358 ;25.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;13.868 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 479 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1067 ; 1.433 ; 1.994 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1066 ; 1.431 ; 1.991 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1333 ; 1.969 ; 2.983 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1334 ; 1.969 ; 2.986 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1081 ; 1.909 ; 2.166 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1081 ; 1.908 ; 2.166 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1603 ; 2.812 ; 3.180 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2760 ; 4.400 ;17.287 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2695 ; 4.213 ;16.931 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5FBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91842 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1AK0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.15350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 -161.85 -118.37 REMARK 500 THR A 165 -155.40 -154.73 REMARK 500 THR A 173 -63.86 -138.49 REMARK 500 THR A 238 -51.18 -140.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 21 N REMARK 620 2 TRP A 21 O 76.4 REMARK 620 3 HIS A 26 NE2 119.1 93.7 REMARK 620 4 ASP A 139 OD1 91.8 168.1 90.8 REMARK 620 5 PO4 A 601 O1 131.6 97.5 109.1 91.5 REMARK 620 6 HOH A 801 O 126.7 93.8 113.6 94.5 5.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD1 REMARK 620 2 HIS A 80 ND1 83.5 REMARK 620 3 HIS A 135 NE2 80.7 102.4 REMARK 620 4 ASP A 139 OD2 175.4 93.0 97.2 REMARK 620 5 PO4 A 601 O1 82.2 144.9 106.7 102.3 REMARK 620 6 HOH A 801 O 80.2 140.0 110.5 104.4 4.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 HIS A 168 NE2 100.0 REMARK 620 3 ASP A 172 OD1 88.9 90.5 REMARK 620 4 ASP A 172 OD2 141.6 88.6 53.4 REMARK 620 5 PO4 A 601 O3 84.9 174.6 92.1 89.1 REMARK 620 6 HOH A 802 O 95.1 162.3 99.2 85.4 12.3 REMARK 620 7 HOH A 803 O 107.8 94.0 161.6 108.8 82.1 72.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FB9 RELATED DB: PDB REMARK 900 5FB9 CONTAINS THE SAME PROTEIN WITH UNOCCUPIED ACTIVE SITE REMARK 900 RELATED ID: 5FBB RELATED DB: PDB REMARK 900 5FBB CONTAINS THE WILD TYPE OF THE SAME PROTEIN IN COMPLEX WITH REMARK 900 PHOSPHATE AND ADENOSINE 5'-MONOPHOSPHATE REMARK 900 RELATED ID: 5FBC RELATED DB: PDB REMARK 900 5FBC CONTAINS THE WILD TYPE OF THE SAME PROTEIN IN COMPLEX WITH 2'- REMARK 900 DEOXYADENOSINE-5'-THIO-MONOPHOSPHATE (5'DAMP(S)) REMARK 900 RELATED ID: 5FBD RELATED DB: PDB REMARK 900 5FBD CONTAINS THE WILD TYPE OF THE SAME PROTEIN IN COMPLEX WITH REMARK 900 PHOSPHATE AND 2'-DEOXYCYTIDINE REMARK 900 RELATED ID: 5FBF RELATED DB: PDB REMARK 900 5FBF CONTAINS THE WILD TYPE OF THE SAME PROTEIN IN COMPLEX WITH TWO REMARK 900 MOLECULES OF 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE REMARK 900 RELATED ID: 5FBG RELATED DB: PDB REMARK 900 5FBG CONTAINS THE D65N MUTANT OF THE SAME PROTEIN IN COMPLEX WITH REMARK 900 PHOSPHATE, 2'-DEOXYCYTIDINE AND 2'-DEOXY-GUANOSINE DBREF 5FBA A 21 287 UNP P24021 NUS1_ASPOR 21 287 SEQRES 1 A 267 TRP GLY ASN LEU GLY HIS GLU THR VAL ALA TYR ILE ALA SEQRES 2 A 267 GLN SER PHE VAL ALA SER SER THR GLU SER PHE CYS GLN SEQRES 3 A 267 ASN ILE LEU GLY ASP ASP SER THR SER TYR LEU ALA ASN SEQRES 4 A 267 VAL ALA THR TRP ALA ASP THR TYR LYS TYR THR ASP ALA SEQRES 5 A 267 GLY GLU PHE SER LYS PRO TYR HIS PHE ILE ASP ALA GLN SEQRES 6 A 267 ASP ASN PRO PRO GLN SER CYS GLY VAL ASP TYR ASP ARG SEQRES 7 A 267 ASP CYS GLY SER ALA GLY CYS SER ILE SER ALA ILE GLN SEQRES 8 A 267 ASN TYR THR ASN ILE LEU LEU GLU SER PRO ASN GLY SER SEQRES 9 A 267 GLU ALA LEU ASN ALA LEU LYS PHE VAL VAL HIS ILE ILE SEQRES 10 A 267 GLY ASP ILE HIS GLN PRO LEU HIS ASP GLU ASN LEU GLU SEQRES 11 A 267 ALA GLY GLY ASN GLY ILE ASP VAL THR TYR ASP GLY GLU SEQRES 12 A 267 THR THR ASN LEU HIS HIS ILE TRP ASP THR ASN MET PRO SEQRES 13 A 267 GLU GLU ALA ALA GLY GLY TYR SER LEU SER VAL ALA LYS SEQRES 14 A 267 THR TYR ALA ASP LEU LEU THR GLU ARG ILE LYS THR GLY SEQRES 15 A 267 THR TYR SER SER LYS LYS ASP SER TRP THR ASP GLY ILE SEQRES 16 A 267 ASP ILE LYS ASP PRO VAL SER THR SER MET ILE TRP ALA SEQRES 17 A 267 ALA ASP ALA ASN THR TYR VAL CYS SER THR VAL LEU ASP SEQRES 18 A 267 ASP GLY LEU ALA TYR ILE ASN SER THR ASP LEU SER GLY SEQRES 19 A 267 GLU TYR TYR ASP LYS SER GLN PRO VAL PHE GLU GLU LEU SEQRES 20 A 267 ILE ALA LYS ALA GLY TYR ARG LEU ALA ALA TRP LEU ASP SEQRES 21 A 267 LEU ILE ALA SER GLN PRO SER HET NAG A 502 14 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 401 1 HET PO4 A 601 5 HET GOL A 701 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 PO4 O4 P 3- FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *214(H2 O) HELIX 1 AA1 GLY A 22 SER A 35 1 14 HELIX 2 AA2 ALA A 38 GLY A 50 1 13 HELIX 3 AA3 LEU A 57 ALA A 61 5 5 HELIX 4 AA4 THR A 62 LYS A 68 1 7 HELIX 5 AA5 GLY A 73 PHE A 81 5 9 HELIX 6 AA6 ASP A 95 CYS A 100 1 6 HELIX 7 AA7 CYS A 105 SER A 120 1 16 HELIX 8 AA8 GLU A 125 HIS A 141 1 17 HELIX 9 AA9 GLN A 142 ASP A 146 5 5 HELIX 10 AB1 ASN A 148 GLY A 153 1 6 HELIX 11 AB2 LEU A 167 THR A 173 1 7 HELIX 12 AB3 THR A 173 GLY A 181 1 9 HELIX 13 AB4 SER A 184 THR A 201 1 18 HELIX 14 AB5 SER A 206 TRP A 211 5 6 HELIX 15 AB6 ASP A 219 THR A 238 1 20 HELIX 16 AB7 GLY A 243 THR A 250 1 8 HELIX 17 AB8 GLY A 254 GLN A 285 1 32 SHEET 1 AA1 2 ASP A 157 TYR A 160 0 SHEET 2 AA1 2 GLU A 163 ASN A 166 -1 O GLU A 163 N TYR A 160 SSBOND 1 CYS A 92 CYS A 236 1555 1555 2.05 SSBOND 2 CYS A 100 CYS A 105 1555 1555 2.07 LINK ND2 ASN A 248 C1 NAG A 502 1555 1555 1.43 LINK N TRP A 21 ZN ZN A 401 1555 1555 2.12 LINK O TRP A 21 ZN ZN A 401 1555 1555 2.23 LINK NE2 HIS A 26 ZN ZN A 401 1555 1555 2.10 LINK OD1 ASP A 65 ZN ZN A 402 1555 1555 2.58 LINK ND1 HIS A 80 ZN ZN A 402 1555 1555 2.07 LINK NE2 HIS A 135 ZN ZN A 402 1555 1555 2.10 LINK OD1 ASP A 139 ZN ZN A 401 1555 1555 2.15 LINK OD2 ASP A 139 ZN ZN A 402 1555 1555 2.06 LINK NE2 HIS A 145 ZN ZN A 403 1555 1555 2.06 LINK NE2 HIS A 168 ZN ZN A 403 1555 1555 2.09 LINK OD1 ASP A 172 ZN ZN A 403 1555 1555 2.68 LINK OD2 ASP A 172 ZN ZN A 403 1555 1555 1.98 LINK ZN ZN A 401 O1 PO4 A 601 1555 1555 1.97 LINK ZN ZN A 401 O HOH A 801 1555 1555 2.05 LINK ZN ZN A 402 O1 PO4 A 601 1555 1555 1.86 LINK ZN ZN A 402 O HOH A 801 1555 1555 2.00 LINK ZN ZN A 403 O3 PO4 A 601 1555 1555 2.02 LINK ZN ZN A 403 O HOH A 802 1555 1555 2.33 LINK ZN ZN A 403 O HOH A 803 1555 1555 2.03 CISPEP 1 PRO A 88 PRO A 89 0 0.38 CRYST1 41.765 62.307 48.003 90.00 106.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023943 0.000000 0.007204 0.00000 SCALE2 0.000000 0.016050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021754 0.00000